Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003777

Physical Location & Seq

Genomic Coordinates Forward (+)

3263335 .. 3268554

Gene Structure 5220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03680.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAGAAGGAGACCCAAGGATTAACCGACCTCTACATTGCCAGCTGGCTTAAGTCTCAGCAACGCGACAAAATTGTTTTGGCAACAAAATTGTGTGGGTATTCAGAGAGGGCTAGTTATCTGCGTGACAATGCAAAGGTCGTAAGGGTAGATGCTGCCAACATTAGAGAGAGCGTAGAGAAAAGTCTCAAGAGACTTGGCACGGATTACATTGATCTATTGCAGATTCATTGGCCAGATCGCTATGTGGCACTATTTGGTGAGTATTGCTATGATCCTTCCAAATGGAGGCCAAGTGTGCCATTTGTGGAGCAACTGAAGGCTCTTCAAGAAATTGTTGATGAAGGAAAGGTACGTTATATTGGTGTTTCCAATGAGACTTCATATGGAGTGATGGAGTTTGTACATACTGCTAAAGTTGAAGGGCTACCAAAGATCGTTAGTATTCAAAACAATTACAATCTGCTTGTTAGAACTCATTTTGAAATTGATCTTGTTGAAGTTTGCCTCCCACAACATCACAACATCGGGTTACTAGCTTATTCTCCACTTGCTGCTGGAGCTCTGACCGGAAAGTACATTGATAGCAATTCTGATGCTGCAAGAAAAGGGAGGTTGAACCTCTTCCCAGGGTACATGGAAAGATATAACAAATCCATTGCCAGGGAAGCAACAATTAAGTATATGGAAGTAGCAAAGAAACACGGGCTAACTCCGGTTCAGCTTGCACTTGGATTTGCACGGGATCGTCCATTTGTGACTAGTTCTATCATTGGGGCAACTTCTGTCGATCAACTGAAGGAGGACATCGATGCTTTTCTGTCGACCGAGAGACCTTTCCCACCAGAACTGATGGCTGATATTGAAGATGTATACAAGAGATACAGAGATCCTACCCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

302

Amino Acids

34.26

Weight (kDa)

7.67

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	69 - 270	4.7e-44	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04420
fragaria_vesca	FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680
malus_domestica	MD13G1214400.v1.1 MD16G1219600.v1.1
prunus_persica	Prupe.1G039700_v2.0.a1 Prupe.1G039700_v2.0.a1 Prupe.1G040000_v2.0.a1
pyrus_communis	pycom02g18940 pycom13g18800 pycom16g18290
rosa_chinensis	RchiOBHm_Chr4g0393231 RchiOBHm_Chr4g0393291 RchiOBHm_Chr4g0393301
rosa_laevigata	RLG00000009766 RLG00000009769
rosa_multiflora	Rmu_sc0001163.1_g000032 Rmu_sc0001590.1_g000018
rosa_roxburghii	Rroxscaffold_5G00338260 Rroxscaffold_5G00338290
rosa_rugosa	Rorug04G0001900
rosa_samantha	Rh4AG046500 Rh4BG042100 Rh4CG049300 Rh4CG049500 Rh4DG043900 Rh5CG200600 Rh6BG072800
rosa_wichuraiana	Rw4G003650 Rw4G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	824, 873
AccII	CGCG	1 cut(s)	66
AclWI	GGATC	3 cut(s)	269, 753, 884
AcoI	YGGCCR	1 cut(s)	233
AcuI	CTGAAG	2 cut(s)	338, 818
AfaI	GTAC	4 cut(s)	354, 405, 578, 635
AfiI	CCNNNNNNNGG	2 cut(s)	288, 663
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	7 cut(s)	329, 422, 449, 485, 500, 619, 866
AhlI	ACTAGT	1 cut(s)	761
AjnI	CCWGG	2 cut(s)	628, 662
AluBI	AGCT	4 cut(s)	45, 539, 563, 724
AluI	AGCT	4 cut(s)	45, 539, 563, 724
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	6 cut(s)	5, 60, 187, 191, 371, 826
AlwI	GGATC	3 cut(s)	269, 753, 884
AoxI	GGCC	2 cut(s)	233, 290
ApeKI	GCWGC	3 cut(s)	155, 554, 599
Asp700I	GAANNNNTTC	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	3 cut(s)	142, 541, 586
BccI	CCATC	2 cut(s)	388, 847
BciT130I	CCWGG	2 cut(s)	630, 664
BcoDI	GTCTC	6 cut(s)	5, 60, 187, 191, 371, 826
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	3 cut(s)	114, 536, 762
BfrI	CTTAAG	1 cut(s)	50
BisI	GCNGC	3 cut(s)	156, 555, 600
BlsI	GCNGC	3 cut(s)	157, 556, 601
Bme1390I	CCNGG	2 cut(s)	630, 664
BmrFI	CCNGG	2 cut(s)	630, 664
BmsI	GCATC	3 cut(s)	142, 586, 802
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	810
BsaI	GGTCTC	2 cut(s)	5, 826
BsaJI	CCNNGG	4 cut(s)	16, 628, 629, 663
BsaWI	WCCGGW	2 cut(s)	569, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 663
Bse3DI	GCAATG	2 cut(s)	36, 657
BseBI	CCWGG	2 cut(s)	630, 664
BseCI	ATCGAT	1 cut(s)	810
BseDI	CCNNGG	4 cut(s)	16, 628, 629, 663
BseLI	CCNNNNNNNGG	2 cut(s)	288, 663
BseMI	GCAATG	2 cut(s)	36, 657
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	142, 541, 586
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	828
BshFI	GGCC	2 cut(s)	235, 292
BshVI	ATCGAT	1 cut(s)	810
BsiEI	CGRYCG	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	570, 716
BslI	CCNNNNNNNGG	2 cut(s)	288, 663
BsmAI	GTCTC	6 cut(s)	5, 60, 187, 191, 371, 826
BsnI	GGCC	2 cut(s)	235, 292
Bso31I	GGTCTC	2 cut(s)	5, 826
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
BspANI	GGCC	2 cut(s)	235, 292
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	810
BspFNI	CGCG	1 cut(s)	66
BspPI	GGATC	3 cut(s)	269, 753, 884
BspQI	GCTCTTC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	50
BspTNI	GGTCTC	2 cut(s)	5, 826
BsrDI	GCAATG	2 cut(s)	36, 657
BsrGI	TGTACA	1 cut(s)	403
BssECI	CCNNGG	4 cut(s)	16, 628, 629, 663
BssMI	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
BssNAI	GTATAC	1 cut(s)	874
BssT1I	CCWWGG	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	874
Bst2UI	CCWGG	2 cut(s)	630, 664
Bst6I	CTCTTC	2 cut(s)	330, 629
BstAFI	CTTAAG	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	43, 47, 726
BstDEI	CTNAG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	8 cut(s)	217, 241, 277, 438, 493, 748, 793, 892
BstMAI	GTCTC	6 cut(s)	5, 60, 187, 191, 371, 826
BstMBI	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
BstMCI	CGRYCG	1 cut(s)	828
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 560, 668
BstNI	CCWGG	2 cut(s)	630, 664
BstSCI	CCNGG	2 cut(s)	628, 662
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	142, 541, 586
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
BstZ17I	GTATAC	1 cut(s)	874
Bsu15I	ATCGAT	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	235, 292
BsuTUI	ATCGAT	1 cut(s)	810
Cac8I	GCNNGC	3 cut(s)	43, 47, 726
ClaI	ATCGAT	1 cut(s)	810
Csp6I	GTAC	4 cut(s)	353, 404, 577, 634
CviAII	CATG	1 cut(s)	637
CviQI	GTAC	4 cut(s)	353, 404, 577, 634
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	8 cut(s)	216, 240, 276, 437, 492, 747, 792, 891
DpnII	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	2 cut(s)	330, 629
EarI	CTCTTC	2 cut(s)	330, 629
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	565
Eco31I	GGTCTC	2 cut(s)	5, 826
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	338, 818
EcoICRI	GAGCTC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	628, 662
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	640
FatI	CATG	1 cut(s)	636
FauNDI	CATATG	1 cut(s)	385
FblI	GTMKAC	2 cut(s)	824, 873
Fnu4HI	GCNGC	3 cut(s)	156, 555, 600
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	3 cut(s)	156, 555, 600
FspBI	CTAG	3 cut(s)	114, 536, 762
GluI	GCNGC	3 cut(s)	156, 555, 600
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	235, 292
HapII	CCGG	2 cut(s)	570, 716
Hin1II	CATG	1 cut(s)	640
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	570, 716
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	825, 874
Hpy188I	TCNGA	3 cut(s)	106, 567, 595
Hpy188III	TCNNGA	2 cut(s)	190, 329
Hpy8I	GTNNAC	2 cut(s)	825, 874
HpyAV	CCTTC	5 cut(s)	288, 313, 338, 416, 793
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	5 cut(s)	134, 223, 602, 728, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 560, 668
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	640
Kzo9I	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	310, 560
Lsp1109I	GCAGC	3 cut(s)	142, 541, 586
LweI	GCATC	3 cut(s)	142, 586, 802
MaeI	CTAG	3 cut(s)	114, 536, 762
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	125, 531, 757
MalI	GATC	8 cut(s)	216, 240, 276, 437, 492, 747, 792, 891
MboI	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
MboII	GAAGA	4 cut(s)	16, 317, 616, 878
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	565
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	7 cut(s)	72, 89, 333, 454, 486, 589, 675
MluNI	TGGCCA	1 cut(s)	235
MnlI	CCTC	7 cut(s)	41, 102, 282, 518, 606, 632, 796
Mox20I	TGGCCA	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	623
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	3 cut(s)	23, 51, 678
Msp20I	TGGCCA	1 cut(s)	235
MspA1I	CMGCKG	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	2 cut(s)	570, 716
MspR9I	CCNGG	2 cut(s)	630, 664
MvaI	CCWGG	2 cut(s)	630, 664
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	298, 560, 668
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
NlaIII	CATG	1 cut(s)	640
NmuCI	GTSAC	2 cut(s)	125, 757
PasI	CCCWGGG	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	157, 556, 601
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	628, 662
PspGI	CCWGG	2 cut(s)	628, 662
PsuI	RGATCY	1 cut(s)	889
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	4 cut(s)	354, 405, 578, 635
RsaNI	GTAC	4 cut(s)	353, 404, 577, 634
SacI	GAGCTC	1 cut(s)	565
SalI	GTCGAC	1 cut(s)	823
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	23, 51, 678
SatI	GCNGC	3 cut(s)	156, 555, 600
Sau3AI	GATC	8 cut(s)	214, 238, 274, 435, 490, 745, 790, 889
ScrFI	CCNGG	2 cut(s)	630, 664
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	3 cut(s)	142, 586, 802
SmlI	CTYRAG	2 cut(s)	50, 188
SmoI	CTYRAG	2 cut(s)	50, 188
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	7 cut(s)	72, 89, 333, 454, 486, 589, 675
SspMI	CTAG	3 cut(s)	114, 536, 762
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	2 cut(s)	628, 662
StyI	CCWWGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	789, 810, 824
TaqII	GACCGA	1 cut(s)	842
TasI	AATT	7 cut(s)	72, 89, 333, 454, 486, 589, 675
TatI	WGTACW	2 cut(s)	403, 576
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	23, 51, 678
Tru9I	TTAA	3 cut(s)	23, 51, 678
TseFI	GTSAC	2 cut(s)	125, 757
TseI	GCWGC	3 cut(s)	155, 554, 599
Tsp45I	GTSAC	2 cut(s)	125, 757
TspDTI	ATGAA	4 cut(s)	17, 218, 357, 372
TspGWI	ACGGA	1 cut(s)	218
Vha464I	CTTAAG	1 cut(s)	50
XmiI	GTMKAC	2 cut(s)	824, 873
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	3 cut(s)	114, 536, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.