RchiOBHm_Chr4g0393231

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003777
Physical Location & Seq
Forward (+)
8733278 .. 8734188
911 bp
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UTR
Exon/CDS
Intron
PRQ36586

Sequence Viewer

Length: 471 bp
ATGGCCTCGTGCGCCACCGCTTTTCTCTACAACTACGCCGCCTCATTAACCTCACCTTGCTCTCCCGGCAGAACCAGAAGCACCGCAAGAAGCCTCCGAAGCTCTCTCAGACCAACCACCATCACTGCCAAGCAGGACCAGAAGACGACGTTGCAGTACAGGAAGCTCGGCGACTCGGACCTCCAAATTAGCAAAATTAATCTGGGCACAATGACATTCGGTCAGCAAAACTCGGAGAAAGAAGCGCACGAAATTCTCAACTACGCTTTCAACAATGGGATCAACATTTTGGACATTGCTGAAGCCATTGTTTTGGCAACAAAAGTATGTGGGTATTCAGAGAGGTCTAGTTATCTGCGTGACAATGTAAAGGTCTTGAGGGTGGATGCTGCAAATATTAGAGAGAGTGTAGAGAAAAGCCTTAAGAGACTCGGCACAGATTACATTGATCTATTGCAAATTCATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

156

Amino Acids

17.41

Weight (kDa)

9.19

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 65 - 156 7.3e-15 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 39, 84
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 2 cut(s) 252, 459
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 158
AflII CTTAAG 1 cut(s) 422
AgsI TTSAA 1 cut(s) 271
AhdI GACNNNNNGTC 1 cut(s) 219
AluBI AGCT 2 cut(s) 102, 166
AluI AGCT 2 cut(s) 102, 166
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 1 cut(s) 287
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 252, 459
AseI ATTAAT 1 cut(s) 198
AspLEI GCGC 2 cut(s) 14, 247
AspS9I GGNCC 2 cut(s) 136, 178
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 45
AvaII GGWCC 2 cut(s) 136, 178
BaeGI GKGCMC 1 cut(s) 209
BauI CACGAG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 422
BisI GCNGC 2 cut(s) 39, 390
BlsI GCNGC 2 cut(s) 40, 391
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 2 cut(s) 136, 178
BmeRI GACNNNNNGTC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 136, 178
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 397
BpuMI CCSGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 294
BseGI GGATG 1 cut(s) 391
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 1 cut(s) 376
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 421
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 279, 448
BspACI CCGC 3 cut(s) 18, 39, 84
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 120
BspPI GGATC 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 294
BssMI GATC 2 cut(s) 279, 448
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
BstAFI CTTAAG 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 391
BstHHI GCGC 2 cut(s) 14, 247
BstKTI GATC 2 cut(s) 282, 451
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 2 cut(s) 279, 448
BstMWI GCNNNNNNNGC 3 cut(s) 11, 66, 99
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
CfoI GCGC 2 cut(s) 14, 247
Cfr13I GGNCC 2 cut(s) 136, 178
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 6 cut(s) 5, 93, 102, 166, 305, 420
CviKI_1 RGCY 6 cut(s) 5, 93, 102, 166, 305, 420
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 281, 450
DpnII GATC 2 cut(s) 279, 448
DriI GACNNNNNGTC 1 cut(s) 219
Eam1105I GACNNNNNGTC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 136, 178
Eco57I CTGAAG 1 cut(s) 321
FaiI YATR 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 39, 390
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 39, 390
FspBI CTAG 1 cut(s) 348
GlaI GCGC 2 cut(s) 13, 246
GluI GCNGC 2 cut(s) 39, 390
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 66
HhaI GCGC 2 cut(s) 14, 247
Hin6I GCGC 2 cut(s) 12, 245
HinP1I GCGC 2 cut(s) 12, 245
HinfI GANTC 2 cut(s) 173, 429
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 45
Hpy188I TCNGA 5 cut(s) 98, 110, 178, 235, 340
Hpy188III TCNNGA 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 154, 392, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 66, 99
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 149
HspAI GCGC 2 cut(s) 12, 245
Kzo9I GATC 2 cut(s) 279, 448
LpnPI CCDG 6 cut(s) 79, 88, 119, 145, 152, 188
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 359
MalI GATC 2 cut(s) 281, 450
MboI GATC 2 cut(s) 279, 448
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 4 cut(s) 186, 195, 252, 459
MlyI GAGTC 2 cut(s) 167, 423
MnlI CCTC 7 cut(s) 16, 52, 61, 104, 191, 336, 372
MseI TTAA 3 cut(s) 47, 198, 423
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 66
MwoI GCNNNNNNNGC 3 cut(s) 11, 66, 99
NciI CCSGG 1 cut(s) 66
NdeII GATC 2 cut(s) 279, 448
NmeAIII GCCGAG 2 cut(s) 147, 411
NmuCI GTSAC 1 cut(s) 359
PkrI GCNGC 2 cut(s) 40, 391
PleI GAGTC 2 cut(s) 167, 423
PpsI GAGTC 2 cut(s) 167, 423
PshBI ATTAAT 1 cut(s) 198
PspPI GGNCC 2 cut(s) 136, 178
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 3 cut(s) 47, 198, 423
SatI GCNGC 2 cut(s) 39, 390
Sau3AI GATC 2 cut(s) 279, 448
Sau96I GGNCC 2 cut(s) 136, 178
SchI GAGTC 2 cut(s) 167, 423
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 209
SetI ASST 8 cut(s) 53, 58, 104, 152, 168, 183, 347, 375
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 2 cut(s) 136, 178
SmlI CTYRAG 2 cut(s) 376, 422
SmoI CTYRAG 2 cut(s) 376, 422
Sse9I AATT 4 cut(s) 186, 195, 252, 459
SsiI CCGC 3 cut(s) 18, 39, 84
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 152
TaqII GACCGA 1 cut(s) 209
TasI AATT 4 cut(s) 186, 195, 252, 459
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 3 cut(s) 47, 198, 423
Tru9I TTAA 3 cut(s) 47, 198, 423
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 452
TspRI CASTG 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 136, 178
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 2 cut(s) 252, 459
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.