Rh5CG200600

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003777
Physical Location & Seq
Reverse (-)
20146606 .. 20147069
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG200600.1

Sequence Viewer

Length: 285 bp
ATGGCCTCGTGCGCCACCGCCTTCCTCTGCAACCATGCCGCCGCATTAACCTCACCTTACTCGCCTCGAAAGACCAGAACCATCGCAAGAAGCCTTCGGAGGCGGAAGAGCTCTCTCAGACCAACCACCATCACTGCCAATCAGGACCAGAAGACGGCGTTGCAGTACTGGAAGCTCGGCAACTCAGACCTCGAAATTAGCGAAATCACTCTGGGCACAATGACGTTTGGTGAGCAAAACTCGGAGAAATCTGCCTCCACGCGTCCACCATCGCCGTTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

94

Amino Acids

10.38

Weight (kDa)

10.13

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AciI CCGC 4 cut(s) 18, 39, 42, 103
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 260
AluBI AGCT 2 cut(s) 111, 175
AluI AGCT 2 cut(s) 111, 175
Alw21I GWGCWC 1 cut(s) 113
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 45, 242
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 113
BauI CACGAG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 113
BccI CCATC 3 cut(s) 89, 137, 277
BceAI ACGGC 2 cut(s) 171, 259
BisI GCNGC 2 cut(s) 39, 42
BlsI GCNGC 2 cut(s) 40, 43
BmcAI AGTACT 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 130, 198
BseNI ACTGG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 113, 218
BspACI CCGC 4 cut(s) 18, 39, 42, 103
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 129, 197
BspFNI CGCG 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 173
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 116, 184
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 2 cut(s) 67, 255
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 5, 93, 111, 175
CviKI_1 RGCY 4 cut(s) 5, 93, 111, 175
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 116, 184
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 1 cut(s) 38
FaiI YATR 1 cut(s) 36
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 39, 42
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 39, 42
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 39, 42
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HphI GGTGA 2 cut(s) 45, 242
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 4 cut(s) 99, 119, 187, 244
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 31, 104
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 30, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 116, 184
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 12
LguI GCTCTTC 1 cut(s) 101
LpnPI CCDG 5 cut(s) 88, 128, 154, 161, 197
MaeII ACGT 1 cut(s) 224
MboII GAAGA 2 cut(s) 118, 163
MhlI GDGCHC 2 cut(s) 113, 218
MluCI AATT 1 cut(s) 195
MluI ACGCGT 1 cut(s) 260
MnlI CCTC 7 cut(s) 16, 35, 61, 75, 93, 200, 265
MseI TTAA 1 cut(s) 47
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PkrI GCNGC 2 cut(s) 40, 43
Psp124BI GAGCTC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SacI GAGCTC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 39, 42
Sau96I GGNCC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 167
SduI GDGCHC 2 cut(s) 113, 218
SetI ASST 6 cut(s) 53, 58, 113, 177, 192, 227
SinI GGWCC 1 cut(s) 145
Sse9I AATT 1 cut(s) 195
SsiI CCGC 4 cut(s) 18, 39, 42, 103
SstI GAGCTC 1 cut(s) 113
TaiI ACGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 67, 192
TasI AATT 1 cut(s) 195
TatI WGTACW 1 cut(s) 165
TauI GCSGC 2 cut(s) 41, 44
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 139
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 145
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.