Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001590.1

Orthogroup ID

OG0003777

Physical Location & Seq

Genomic Coordinates Reverse (-)

113595 .. 116562

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001590.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgttgaaatggccagatcgctatgttgcactatttggtgagtattgttatgatccttccaaatggaggccaagcataccatttgtggagcaactgaaggctcttcaagaagttgtggatgaaggaaaggtacgttatattggtgtttccaatgagacttcatacggagtgatggagttcgtacatactgctaaagttgaaggactaccaaagatcatcagtatccaaaacaattacagtctgcttgttagaactcattttgaaattgatcttgttgaagtttgcctcccacaacatcacaacattggcttactagcttattctccacttgctggtggagctctaaccggaaagtacattgatagcaattccgatgctgcaagaaaagggaggttgaatctcttcccaggctacatggaaagatataaaaaatccattgccagggaagcaacaataaagtacatcgaacttgccaaaaagcatgggctgactccagttcaacttgcacttggatttgcaagggatcgcccattcatgaccagttctatcattggcgcaacttctgtcaaccaactgaaagaggacattgatgcttttctgtcaaccgagaggcctttaccagcagaactggcggctgatatcgaagatatttacaagagataccgagatcctacccttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

227

Amino Acids

25.71

Weight (kDa)

6.97

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04420
fragaria_vesca	FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680
malus_domestica	MD13G1214400.v1.1 MD16G1219600.v1.1
prunus_persica	Prupe.1G039700_v2.0.a1 Prupe.1G039700_v2.0.a1 Prupe.1G040000_v2.0.a1
pyrus_communis	pycom02g18940 pycom13g18800 pycom16g18290
rosa_chinensis	RchiOBHm_Chr4g0393231 RchiOBHm_Chr4g0393291 RchiOBHm_Chr4g0393301
rosa_laevigata	RLG00000009766 RLG00000009769
rosa_multiflora	Rmu_sc0001163.1_g000032 Rmu_sc0001590.1_g000018
rosa_roxburghii	Rroxscaffold_5G00338260 Rroxscaffold_5G00338290
rosa_rugosa	Rorug04G0001900
rosa_samantha	Rh4AG046500 Rh4BG042100 Rh4CG049300 Rh4CG049500 Rh4DG043900 Rh5CG200600 Rh6BG072800
rosa_wichuraiana	Rw4G003650 Rw4G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	3 cut(s)	47, 531, 662
AcoI	YGGCCR	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	4 cut(s)	132, 183, 356, 461
AfiI	CCNNNNNNNGG	3 cut(s)	66, 332, 441
AgsI	TTSAA	7 cut(s)	7, 107, 200, 263, 278, 397, 500
AjnI	CCWGG	2 cut(s)	406, 440
AluBI	AGCT	2 cut(s)	317, 341
AluI	AGCT	2 cut(s)	317, 341
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	3 cut(s)	47, 531, 662
AoxI	GGCC	3 cut(s)	11, 68, 611
ApeKI	GCWGC	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	343
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	408, 442
BciVI	GTATCC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	378, 633
BlsI	GCNGC	2 cut(s)	379, 634
Bme1390I	CCNGG	2 cut(s)	408, 442
BmrFI	CCNGG	2 cut(s)	408, 442
BmsI	GCATC	2 cut(s)	364, 580
BpmI	CTGGAG	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	406, 441
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 332, 441
Bse1I	ACTGG	3 cut(s)	494, 540, 633
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	408, 442
BseDI	CCNNGG	2 cut(s)	406, 441
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	66, 332, 441
BseMI	GCAATG	1 cut(s)	435
BseNI	ACTGG	3 cut(s)	494, 540, 633
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	3 cut(s)	13, 70, 613
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	66, 332, 441
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	13, 70, 613
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	3 cut(s)	13, 70, 613
BspHI	TCATGA	1 cut(s)	534
BspPI	GGATC	3 cut(s)	47, 531, 662
BspQI	GCTCTTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	3 cut(s)	494, 540, 633
BssECI	CCNNGG	2 cut(s)	406, 441
BssMI	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
Bst2UI	CCWGG	2 cut(s)	408, 442
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	108, 407
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	6 cut(s)	19, 55, 216, 271, 526, 670
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 446, 629
BstNI	CCWGG	2 cut(s)	408, 442
BstSCI	CCNGG	2 cut(s)	406, 440
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	13, 70, 613
BtsCI	GGATG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	1 cut(s)	557
Csp6I	GTAC	4 cut(s)	131, 182, 355, 460
CviAII	CATG	3 cut(s)	415, 482, 535
CviQI	GTAC	4 cut(s)	131, 182, 355, 460
DpnI	GATC	6 cut(s)	18, 54, 215, 270, 525, 669
DpnII	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	2 cut(s)	108, 407
EarI	CTCTTC	2 cut(s)	108, 407
Ecl136II	GAGCTC	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	613
Eco24I	GRGCYC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	406, 440
EcoRV	GATATC	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	343
FaeI	CATG	3 cut(s)	418, 485, 538
FatI	CATG	3 cut(s)	414, 481, 534
Fnu4HI	GCNGC	2 cut(s)	378, 633
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	2 cut(s)	378, 633
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	2 cut(s)	378, 633
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	13, 70, 613
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	3 cut(s)	418, 485, 538
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HincII	GTYRAC	2 cut(s)	568, 603
HindII	GTYRAC	2 cut(s)	568, 603
HinfI	GANTC	2 cut(s)	397, 490
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	568, 603
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	2 cut(s)	107, 535
Hpy8I	GTNNAC	2 cut(s)	568, 603
HpyAV	CCTTC	4 cut(s)	66, 91, 116, 194
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	29, 380, 506, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 446, 629
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	3 cut(s)	418, 485, 538
HspAI	GCGC	1 cut(s)	555
Kzo9I	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	88, 338
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	364, 580
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	133
MalI	GATC	6 cut(s)	18, 54, 215, 270, 525, 669
MboI	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
MboII	GAAGA	3 cut(s)	95, 394, 656
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	3 cut(s)	232, 264, 367
MluNI	TGGCCA	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	484
MnlI	CCTC	5 cut(s)	60, 296, 384, 574, 603
Mox20I	TGGCCA	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	13
Msp20I	TGGCCA	1 cut(s)	13
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	408, 442
MvaI	CCWGG	2 cut(s)	408, 442
MwoI	GCNNNNNNNGC	3 cut(s)	338, 446, 629
NdeII	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
NlaIII	CATG	3 cut(s)	418, 485, 538
PagI	TCATGA	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	379, 634
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	406, 440
PspGI	CCWGG	2 cut(s)	406, 440
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	4 cut(s)	132, 183, 356, 461
RsaNI	GTAC	4 cut(s)	131, 182, 355, 460
SacI	GAGCTC	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	2 cut(s)	378, 633
Sau3AI	GATC	6 cut(s)	16, 52, 213, 268, 523, 667
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	408, 442
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	5 cut(s)	132, 136, 319, 343, 395
SfaNI	GCATC	2 cut(s)	364, 580
Sse9I	AATT	3 cut(s)	232, 264, 367
SseBI	AGGCCT	1 cut(s)	613
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	343
StuI	AGGCCT	1 cut(s)	613
StyD4I	CCNGG	2 cut(s)	406, 440
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	465, 642
TasI	AATT	3 cut(s)	232, 264, 367
TatI	WGTACW	2 cut(s)	354, 459
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	135, 150, 523
TspGWI	ACGGA	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.