Rw4G003650

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003777
Physical Location & Seq
Forward (+)
7183861 .. 7184637
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G003650.1

Sequence Viewer

Length: 345 bp
ATGACATTCGGTCAGAAAAACTCGGAGAAAGAAGAGCACGAAATTCTCAACTACGCTTTCAACAATGGGATCAACATTTTGGACATTGCTGAAGCCTACCCGATTCCGATGAAGAAGGAGATGCAGGGATTGACTAACCTGTACATTGCTAACTGGCTCAAGTCTCAGCCTCGCGAGAAGATTGTTTTGGCAACAAAAGTATGTGGGTATTCAGAGAGGTCTAGTTATCTGCGTGACAATGCAAAGGTCCTGAGGGTGGATGCTGCAAATATTAGAGAGAGTGTAGAGAAAAGCCTTAAGAGACTTGGCACAGATTACATTGATCTATTGCAAATTCATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

114

Amino Acids

13.2

Weight (kDa)

7.82

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 114 4e-22 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 174
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 2 cut(s) 42, 333
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 256
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 61
AhdI GACNNNNNGTC 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 168, 295
AlwI GGATC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 2 cut(s) 42, 333
AspS9I GGNCC 1 cut(s) 247
AvaII GGWCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 168, 295
BfaI CTAG 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 247
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 247
BmsI GCATC 2 cut(s) 111, 250
BpuEI CTTGAG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 2 cut(s) 84, 144
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 2 cut(s) 84, 144
BseMII CTCAG 2 cut(s) 179, 242
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 168, 295
Bsp1286I GDGCHC 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 69, 322
Bsp68I TCGCGA 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 178, 243
BspFNI CGCG 1 cut(s) 174
BspPI GGATC 1 cut(s) 77
BspQI GCTCTTC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 84, 144
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 1 cut(s) 158
BssMI GATC 2 cut(s) 69, 322
Bst6I CTCTTC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 165, 251
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 2 cut(s) 72, 325
BstMAI GTCTC 2 cut(s) 168, 295
BstMBI GATC 2 cut(s) 69, 322
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 265
BtuMI TCGCGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 4 cut(s) 95, 157, 169, 294
CviKI_1 RGCY 4 cut(s) 95, 157, 169, 294
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 165, 251
DpnI GATC 2 cut(s) 71, 324
DpnII GATC 2 cut(s) 69, 322
DriI GACNNNNNGTC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 247
FaiI YATR 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 222
GluI GCNGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 103
Hpy188I TCNGA 4 cut(s) 15, 25, 108, 214
Hpy188III TCNNGA 2 cut(s) 173, 250
HpyAV CCTTC 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 124, 242, 266, 331
HpyF3I CTNAG 2 cut(s) 165, 251
Kzo9I GATC 2 cut(s) 69, 322
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 4 cut(s) 110, 139, 152, 263
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 111, 250
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 71, 324
MboI GATC 2 cut(s) 69, 322
MboII GAAGA 3 cut(s) 44, 124, 190
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 42, 333
MnlI CCTC 3 cut(s) 180, 210, 246
MseI TTAA 1 cut(s) 297
MspCI CTTAAG 1 cut(s) 296
MvnI CGCG 1 cut(s) 174
NdeII GATC 2 cut(s) 69, 322
NmuCI GTSAC 1 cut(s) 233
NruI TCGCGA 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
RruI TCGCGA 1 cut(s) 174
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 69, 322
Sau96I GGNCC 1 cut(s) 247
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 141, 221, 249
SfaNI GCATC 2 cut(s) 111, 250
SinI GGWCC 1 cut(s) 247
SmlI CTYRAG 2 cut(s) 158, 296
SmoI CTYRAG 2 cut(s) 158, 296
Sse9I AATT 2 cut(s) 42, 333
SspI AATATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 222
TasI AATT 2 cut(s) 42, 333
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 125, 326
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 42, 333
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.