Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003777

Physical Location & Seq

Genomic Coordinates Forward (+)

20311193 .. 20311982

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1214400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTTTGTGCTCCACCGCCTTTCTCTGCAACCATGTAGCAGCAGCAGCACCATGGTCACCTCACAAAAGTAGAGCTAGAAGTTTCCGGCGGCAAAGGAGCTCTATCATCAAAGCGACTGTCACCTCCGATGTCAAGCAAGACCTTAATACCTCGTTGCAGTACAGGAAGCTTGATGACTCAAACCTTGTAATCAGTGAAATCACTCTCCAAACCATGACTTTCAGTGAGCACAACACTGAGATAGAAGCTCACAAGATTCTCTACGCAGTTGAAAATGGGATTAATGTTTTCGACACTACCGAGGCCGCGAGTGACATGTACCCAATTCCCATGAAGGAGGTGACAGAAGGAAACACTGATCGCCACATTACCAGTTGGCTTAAATCTCATCTCCGCCATAAAGTATTTGATAGTTTGACATGCTATGTTGCGAGATTTTGTTTAGGATTCTTGTGGATGAGATGCAATTATATTAATGCGTTGTTTGATTTGCAGTTTAATACTGATAACATAACGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

175

Amino Acids

19.93

Weight (kDa)

7.03

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04420
fragaria_vesca	FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680
malus_domestica	MD13G1214400.v1.1 MD16G1219600.v1.1
prunus_persica	Prupe.1G039700_v2.0.a1 Prupe.1G039700_v2.0.a1 Prupe.1G040000_v2.0.a1
pyrus_communis	pycom02g18940 pycom13g18800 pycom16g18290
rosa_chinensis	RchiOBHm_Chr4g0393231 RchiOBHm_Chr4g0393291 RchiOBHm_Chr4g0393301
rosa_laevigata	RLG00000009766 RLG00000009769
rosa_multiflora	Rmu_sc0001163.1_g000032 Rmu_sc0001590.1_g000018
rosa_roxburghii	Rroxscaffold_5G00338260 Rroxscaffold_5G00338290
rosa_rugosa	Rorug04G0001900
rosa_samantha	Rh4AG046500 Rh4BG042100 Rh4CG049300 Rh4CG049500 Rh4DG043900 Rh5CG200600 Rh6BG072800
rosa_wichuraiana	Rw4G003650 Rw4G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	311
AciI	CCGC	4 cut(s)	18, 91, 309, 397
AfaI	GTAC	2 cut(s)	164, 323
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	4 cut(s)	77, 102, 172, 251
AluI	AGCT	4 cut(s)	77, 102, 172, 251
Alw21I	GWGCWC	3 cut(s)	14, 104, 234
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	3 cut(s)	41, 44, 47
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AseI	ATTAAT	2 cut(s)	285, 477
AsuHPI	GGTGA	3 cut(s)	51, 115, 355
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	3 cut(s)	14, 104, 234
BbvI	GCAGC	3 cut(s)	53, 56, 59
BfaI	CTAG	1 cut(s)	78
BisI	GCNGC	5 cut(s)	42, 45, 48, 92, 309
BlsI	GCNGC	5 cut(s)	43, 46, 49, 93, 310
BmsI	GCATC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	53, 303
Bse1I	ACTGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	53, 303
BseGI	GGATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	3 cut(s)	53, 56, 59
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	308
BsiHKAI	GWGCWC	3 cut(s)	14, 104, 234
BsiSI	CCGG	1 cut(s)	88
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	3 cut(s)	14, 104, 234
Bsp143I	GATC	1 cut(s)	361
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	4 cut(s)	18, 91, 309, 397
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	53, 303
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	322, 426
BstPI	GGTNACC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	53, 56, 59
BsuRI	GGCC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	465
BtsIMutI	CAGTG	4 cut(s)	202, 232, 237, 357
Csp6I	GTAC	2 cut(s)	163, 322
CviAII	CATG	6 cut(s)	35, 54, 217, 319, 334, 423
CviJI	RGCY	7 cut(s)	5, 77, 102, 172, 251, 308, 382
CviKI_1	RGCY	7 cut(s)	5, 77, 102, 172, 251, 308, 382
CviQI	GTAC	2 cut(s)	163, 322
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	6 cut(s)	38, 57, 220, 322, 337, 426
FatI	CATG	6 cut(s)	34, 53, 216, 318, 333, 422
Fnu4HI	GCNGC	5 cut(s)	42, 45, 48, 92, 309
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	42, 45, 48, 92, 309
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	5 cut(s)	42, 45, 48, 92, 309
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	6 cut(s)	38, 57, 220, 322, 337, 426
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	179, 259, 450
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	3 cut(s)	51, 115, 355
Hpy188I	TCNGA	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	331, 344
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	4 cut(s)	30, 160, 468, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	6 cut(s)	38, 57, 220, 322, 337, 426
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	17, 99
LpnPI	CCDG	3 cut(s)	101, 151, 388
Lsp1109I	GCAGC	3 cut(s)	53, 56, 59
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	4 cut(s)	57, 121, 314, 343
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	14, 104, 234
MluCI	AATT	2 cut(s)	327, 469
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	5 cut(s)	72, 136, 163, 298, 334
MseI	TTAA	5 cut(s)	147, 285, 384, 477, 501
MspI	CCGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	6 cut(s)	38, 57, 220, 322, 337, 426
NmuCI	GTSAC	4 cut(s)	57, 121, 314, 343
NspI	RCATGY	2 cut(s)	322, 426
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	259, 450
PkrI	GCNGC	5 cut(s)	43, 46, 49, 93, 310
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	318
PshBI	ATTAAT	2 cut(s)	285, 477
Psp124BI	GAGCTC	1 cut(s)	104
PspEI	GGTNACC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	164, 323
RsaNI	GTAC	2 cut(s)	163, 322
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	5 cut(s)	147, 285, 384, 477, 501
SatI	GCNGC	5 cut(s)	42, 45, 48, 92, 309
Sau3AI	GATC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	14, 104, 234
SfaNI	GCATC	1 cut(s)	455
Sse9I	AATT	2 cut(s)	327, 469
SsiI	CCGC	4 cut(s)	18, 91, 309, 397
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	327, 469
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	2 cut(s)	94, 311
TfiI	GAWTC	2 cut(s)	259, 450
Tru1I	TTAA	5 cut(s)	147, 285, 384, 477, 501
Tru9I	TTAA	5 cut(s)	147, 285, 384, 477, 501
TscAI	CASTG	4 cut(s)	202, 232, 244, 364
TseFI	GTSAC	4 cut(s)	57, 121, 314, 343
TseI	GCWGC	3 cut(s)	41, 44, 47
Tsp45I	GTSAC	4 cut(s)	57, 121, 314, 343
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	4 cut(s)	202, 232, 244, 364
VspI	ATTAAT	2 cut(s)	285, 477
XceI	RCATGY	2 cut(s)	322, 426
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.