Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003777

Physical Location & Seq

Genomic Coordinates Forward (+)

11009882 .. 11011778

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG072800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCTCGTGCGCCACCGCCTTCCTCTGCAACCATGCCGCCGTATTAACCTCACCTTACTCGCCTCGAAAGACCAGAACCACCGTAAGAAGCCTTCGGAGGCGGAGGAGCTCTCTCAGACCAACCACCATCATTGCCAAACAGGACCAGAAGACGGCGTTGCAGTACCGGAAGCTCGGCAACTCAGACCTCGAAATTAGCGAAATCACTCTGGGCACAACGACTTCTGTTCTTGACAAATATGCAGACAAGGATGAAGTTGATCACGAGCCAATATCAACTGATGAAGATGAGGACCCCAGTTCCTTCGATGAAGATGATGACAATCAAGTTCCCTTGCTTTTGAAGAGACTTTATCTCAAAGACTTGTTTTTACAACATAGCAGCAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

131

Amino Acids

14.87

Weight (kDa)

5.9

Isoelectric Point (pI)

66.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04420
fragaria_vesca	FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680
malus_domestica	MD13G1214400.v1.1 MD16G1219600.v1.1
prunus_persica	Prupe.1G039700_v2.0.a1 Prupe.1G039700_v2.0.a1 Prupe.1G040000_v2.0.a1
pyrus_communis	pycom02g18940 pycom13g18800 pycom16g18290
rosa_chinensis	RchiOBHm_Chr4g0393231 RchiOBHm_Chr4g0393291 RchiOBHm_Chr4g0393301
rosa_laevigata	RLG00000009766 RLG00000009769
rosa_multiflora	Rmu_sc0001163.1_g000032 Rmu_sc0001590.1_g000018
rosa_roxburghii	Rroxscaffold_5G00338260 Rroxscaffold_5G00338290
rosa_rugosa	Rorug04G0001900
rosa_samantha	Rh4AG046500 Rh4BG042100 Rh4CG049300 Rh4CG049500 Rh4DG043900 Rh5CG200600 Rh6BG072800
rosa_wichuraiana	Rw4G003650 Rw4G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	18, 39, 103
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	346
AluBI	AGCT	2 cut(s)	111, 175
AluI	AGCT	2 cut(s)	111, 175
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	343
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	145, 295
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	2 cut(s)	145, 295
BaeGI	GKGCMC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	113
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
BauI	CACGAG	2 cut(s)	7, 266
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	113
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	26, 171
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	39, 385
BlsI	GCNGC	2 cut(s)	40, 386
Bme18I	GGWCC	2 cut(s)	145, 295
BmgT120I	GGNCC	2 cut(s)	145, 295
BmiI	GGNNCC	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BsaBI	GATNNNNATC	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	324
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	130, 198
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	218
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	113, 218
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	3 cut(s)	18, 39, 103
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	129, 197
BspLI	GGNNCC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	262
BssSI	CACGAG	2 cut(s)	7, 266
Bst2BI	CACGAG	2 cut(s)	7, 266
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	116, 184
BstF5I	GGATG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	145, 295
Csp6I	GTAC	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	5 cut(s)	5, 93, 111, 175, 271
CviKI_1	RGCY	5 cut(s)	5, 93, 111, 175, 271
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	116, 184
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	145, 295
Eco53kI	GAGCTC	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	113
FaeI	CATG	1 cut(s)	38
FaiI	YATR	4 cut(s)	36, 243, 381, 394
FatI	CATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	39, 385
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	39, 385
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	39, 385
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	169
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	99, 119, 187
Hpy188III	TCNNGA	2 cut(s)	233, 266
HpyAV	CCTTC	3 cut(s)	31, 104, 316
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	30, 163, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	116, 184
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	6 cut(s)	88, 128, 161, 182, 197, 313
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	4 cut(s)	163, 299, 326, 358
MhlI	GDGCHC	2 cut(s)	113, 218
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	8 cut(s)	16, 35, 61, 75, 93, 99, 200, 286
MseI	TTAA	1 cut(s)	47
MspI	CCGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	40, 386
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	145, 295
PspPPI	RGGWCCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	2 cut(s)	39, 385
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	145, 295
SduI	GDGCHC	2 cut(s)	113, 218
SetI	ASST	5 cut(s)	53, 58, 113, 177, 192
SinI	GGWCC	2 cut(s)	145, 295
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	3 cut(s)	18, 39, 103
SstI	GAGCTC	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	3 cut(s)	67, 192, 309
TasI	AATT	1 cut(s)	195
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseI	GCWGC	1 cut(s)	384
TspDTI	ATGAA	3 cut(s)	270, 300, 327
VpaK11BI	GGWCC	2 cut(s)	145, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.