Rroxscaffold_5G00338290

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003777
Physical Location & Seq
Forward (+)
6460258 .. 6464764
4507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338290.1

Sequence Viewer

Length: 1224 bp
ATGGCCTCGTGCGCCACCGCCTTCCTCTGCAACCACGCCGCCGCATTAACCTCACCTTACTCGCCTCGAAAGACCAGAACCACCGCAAGAAGCCTCCGGCGCTCTCTCAGACCAACCACCATAACCGCCAAGCAGGACCAGAAGACGGCGTTGCAGTACCGGAAGCTCGGCGACTCGGACCTCGAAATTAGCGAAATCACTCTGGGCACAATGACGTTCGGTCAGCAAAACTCGGAGAAAGAAGCGCACGAGATTCTCGGCTACGCTTTCGACAATGGGATCAACATTTTGGACACTGCTGAAGCTTACCCCATTCCTATGAAGAAGGAGACGCAGGGATTGACTGACCTCTACATTGCCAGCTGGCTCAAGTCTCAGCCCCGCGAGAAGATTGTTTTGGCAACAAAAGTATGTGGGTATTCAGAGAGGTCTAGTTATCTGCGTGACAATGCAAAGGTCCTGAGGGTGGATGCTGCAAATATTAGAGAGAGTGTAGAGAAAAGCCTTAAGAGACTCGGCACAGATTACATTGATCTATTGCAAATTCATTGGCCAGATCGCTATGTTGCACTATTTGGTGAGTATTGTTATGATCCTTCCAAATGGAGGCCAAGCGTACCATTTGTGGAGCAACTGAAGGCTCTTCAAGAAGTTGTGGATGAAGGAAAGGTACGTTATATTGGTGTTTCCAATGAGACTTCATACGGAGTGATGGAGTTCGTACATACTGCCAAAGTTGAAGGACTACCAAAGATCGTCAGTATCCAAAACAATTACAGTCTGCTTGTTAGAACTCATTTTGAAATTGATCTTGTTGAAGTTTGCCTCCCACAACATCACAACATTGGCTTACTAGCTTATTCTCCACTTTCTGGTGGAGCTCTGACCGGAAAGTACATTGATAGCAATTCCGATGCTGCAAGAAAAGGGAGGTTGAATCTCTTCCCAGGCTACATGGAAAGATATAACAAATCCATTGCCAGGGAAGCAACGATTAAGTACATTGAACTTGCCAAAAAACACGGGCTGACTCCAGTTCAGCTTGCACTTGGATTTGCAAGGGATCGTCCATTCATCACCAGTTCTATCATTGGCGCAACTTCTGTCAACCAACTGAAAGAGGACATTGATGCTTTTCTGTCAACCGAGAGGCCTTTACCAGCAGAACTTGCGGCTGATATCGAAGATATTTACAAGAGATACCGAGATCCTACTCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

407

Amino Acids

45.77

Weight (kDa)

8.38

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 65 - 398 1.1e-64 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 872
AccII CGCG 1 cut(s) 384
AciI CCGC 7 cut(s) 18, 39, 42, 84, 126, 382, 1172
AclWI GGATC 4 cut(s) 287, 587, 1071, 1202
AcoI YGGCCR 1 cut(s) 551
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 2 cut(s) 321, 656
AfaI GTAC 6 cut(s) 158, 618, 672, 723, 896, 1001
AfiI CCNNNNNNNGG 5 cut(s) 145, 466, 606, 872, 981
AflII CTTAAG 1 cut(s) 506
AgsI TTSAA 6 cut(s) 647, 740, 803, 818, 937, 1007
AhdI GACNNNNNGTC 1 cut(s) 219
AjnI CCWGG 2 cut(s) 946, 980
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 6 cut(s) 166, 305, 363, 857, 881, 1042
AluI AGCT 6 cut(s) 166, 305, 363, 857, 881, 1042
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 4 cut(s) 323, 378, 505, 689
AlwI GGATC 4 cut(s) 287, 587, 1071, 1202
AoxI GGCC 4 cut(s) 3, 551, 608, 1151
ApeKI GCWGC 2 cut(s) 473, 917
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 941
AspLEI GCGC 4 cut(s) 14, 102, 247, 1097
AspS9I GGNCC 3 cut(s) 136, 178, 457
AsuHPI GGTGA 3 cut(s) 45, 590, 1069
AvaII GGWCC 3 cut(s) 136, 178, 457
AxyI CCTNAGG 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 553
BanII GRGCYC 1 cut(s) 883
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
BauI CACGAG 2 cut(s) 7, 248
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 883
BbvI GCAGC 2 cut(s) 460, 904
BccI CCATC 1 cut(s) 706
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 2 cut(s) 948, 982
BciVI GTATCC 1 cut(s) 773
BcoDI GTCTC 4 cut(s) 323, 378, 505, 689
BfaI CTAG 2 cut(s) 432, 854
BfoI RGCGCY 1 cut(s) 103
BfrI CTTAAG 1 cut(s) 506
BfuI GTATCC 1 cut(s) 773
BisI GCNGC 5 cut(s) 39, 42, 474, 918, 1173
BlsI GCNGC 5 cut(s) 40, 43, 475, 919, 1174
Bme1390I CCNGG 2 cut(s) 948, 982
Bme18I GGWCC 3 cut(s) 136, 178, 457
BmeRI GACNNNNNGTC 1 cut(s) 219
BmgT120I GGNCC 3 cut(s) 136, 178, 457
BmrFI CCNGG 2 cut(s) 948, 982
BmsI GCATC 3 cut(s) 460, 904, 1120
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 946, 981
BsaWI WCCGGW 2 cut(s) 159, 887
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 466, 606, 872, 981
Bse1I ACTGG 2 cut(s) 1034, 1080
Bse21I CCTNAGG 1 cut(s) 461
Bse3DI GCAATG 2 cut(s) 354, 975
BseBI CCWGG 2 cut(s) 948, 982
BseDI CCNNGG 2 cut(s) 946, 981
BseGI GGATG 2 cut(s) 475, 664
BseLI CCNNNNNNNGG 5 cut(s) 145, 466, 606, 872, 981
BseMI GCAATG 2 cut(s) 354, 975
BseMII CTCAG 3 cut(s) 121, 389, 452
BseNI ACTGG 2 cut(s) 1034, 1080
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 460, 904
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 4 cut(s) 5, 553, 610, 1153
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 3 cut(s) 97, 160, 888
BslI CCNNNNNNNGG 5 cut(s) 145, 466, 606, 872, 981
BsmAI GTCTC 4 cut(s) 323, 378, 505, 689
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 4 cut(s) 5, 553, 610, 1153
Bsp1286I GDGCHC 2 cut(s) 209, 883
Bsp143I GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
BspACI CCGC 7 cut(s) 18, 39, 42, 84, 126, 382, 1172
BspANI GGCC 4 cut(s) 5, 553, 610, 1153
BspCNI CTCAG 3 cut(s) 120, 388, 453
BspFNI CGCG 1 cut(s) 384
BspPI GGATC 4 cut(s) 287, 587, 1071, 1202
BspQI GCTCTTC 1 cut(s) 648
BspTI CTTAAG 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 354, 975
BsrI ACTGG 2 cut(s) 1034, 1080
BssECI CCNNGG 2 cut(s) 946, 981
BssMI GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
BssSI CACGAG 2 cut(s) 7, 248
Bst2BI CACGAG 2 cut(s) 7, 248
Bst2UI CCWGG 2 cut(s) 948, 982
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 2 cut(s) 648, 947
BstAFI CTTAAG 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 1169
BstC8I GCNNGC 3 cut(s) 361, 365, 1044
BstDEI CTNAG 3 cut(s) 107, 375, 461
BstF5I GGATG 2 cut(s) 475, 664
BstFNI CGCG 1 cut(s) 384
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 4 cut(s) 14, 102, 247, 1097
BstKTI GATC 8 cut(s) 282, 535, 559, 595, 756, 811, 1066, 1210
BstMAI GTCTC 4 cut(s) 323, 378, 505, 689
BstMBI GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
BstMWI GCNNNNNNNGC 4 cut(s) 11, 99, 986, 1169
BstNI CCWGG 2 cut(s) 948, 982
BstSCI CCNGG 2 cut(s) 946, 980
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 460, 904
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 1207
BstYI RGATCY 1 cut(s) 1207
Bsu36I CCTNAGG 1 cut(s) 461
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 4 cut(s) 5, 553, 610, 1153
BtsCI GGATG 2 cut(s) 475, 664
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 3 cut(s) 361, 365, 1044
CfoI GCGC 4 cut(s) 14, 102, 247, 1097
Cfr13I GGNCC 3 cut(s) 136, 178, 457
CseI GACGC 1 cut(s) 340
Csp6I GTAC 6 cut(s) 157, 617, 671, 722, 895, 1000
CviAII CATG 1 cut(s) 955
CviQI GTAC 6 cut(s) 157, 617, 671, 722, 895, 1000
DdeI CTNAG 3 cut(s) 107, 375, 461
DpnI GATC 8 cut(s) 281, 534, 558, 594, 755, 810, 1065, 1209
DpnII GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
DriI GACNNNNNGTC 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 551
Eam1104I CTCTTC 2 cut(s) 648, 947
Eam1105I GACNNNNNGTC 1 cut(s) 219
EarI CTCTTC 2 cut(s) 648, 947
Ecl136II GAGCTC 1 cut(s) 881
Eco147I AGGCCT 1 cut(s) 1153
Eco24I GRGCYC 1 cut(s) 883
Eco32I GATATC 1 cut(s) 1180
Eco47I GGWCC 3 cut(s) 136, 178, 457
Eco53kI GAGCTC 1 cut(s) 881
Eco57I CTGAAG 2 cut(s) 321, 656
Eco81I CCTNAGG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 881
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 946, 980
EcoRV GATATC 1 cut(s) 1180
EcoT38I GRGCYC 1 cut(s) 883
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 1 cut(s) 958
FatI CATG 1 cut(s) 954
FauI CCCGC 1 cut(s) 389
Fnu4HI GCNGC 5 cut(s) 39, 42, 474, 918, 1173
FokI GGATG 2 cut(s) 482, 671
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 5 cut(s) 39, 42, 474, 918, 1173
FspBI CTAG 2 cut(s) 432, 854
GlaI GCGC 4 cut(s) 13, 101, 246, 1096
GluI GCNGC 5 cut(s) 39, 42, 474, 918, 1173
GsuI CTGGAG 1 cut(s) 1017
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 4 cut(s) 5, 553, 610, 1153
HapII CCGG 3 cut(s) 97, 160, 888
HgaI GACGC 1 cut(s) 340
HhaI GCGC 4 cut(s) 14, 102, 247, 1097
Hin1II CATG 1 cut(s) 958
Hin6I GCGC 4 cut(s) 12, 100, 245, 1095
HinP1I GCGC 4 cut(s) 12, 100, 245, 1095
HincII GTYRAC 2 cut(s) 1108, 1143
HindII GTYRAC 2 cut(s) 1108, 1143
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 5 cut(s) 173, 253, 513, 937, 1030
HpaII CCGG 3 cut(s) 97, 160, 888
HphI GGTGA 3 cut(s) 45, 590, 1069
Hpy166II GTNNAC 2 cut(s) 1108, 1143
Hpy188I TCNGA 6 cut(s) 110, 178, 235, 424, 885, 913
Hpy188III TCNNGA 2 cut(s) 460, 647
Hpy8I GTNNAC 2 cut(s) 1108, 1143
HpyAV CCTTC 6 cut(s) 31, 319, 606, 631, 656, 734
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4IV ACGT 2 cut(s) 215, 673
HpyCH4V TGCA 9 cut(s) 30, 154, 452, 476, 541, 569, 920, 1046, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 99, 986, 1169
HpyF3I CTNAG 3 cut(s) 107, 375, 461
HpySE526I ACGT 2 cut(s) 215, 673
Hsp92II CATG 1 cut(s) 958
HspAI GCGC 4 cut(s) 12, 100, 245, 1095
Kzo9I GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 2 cut(s) 628, 878
Lsp1109I GCAGC 2 cut(s) 460, 904
LweI GCATC 3 cut(s) 460, 904, 1120
MaeI CTAG 2 cut(s) 432, 854
MaeII ACGT 2 cut(s) 215, 673
MaeIII GTNAC 1 cut(s) 443
MalI GATC 8 cut(s) 281, 534, 558, 594, 755, 810, 1065, 1209
MboI GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
MboII GAAGA 6 cut(s) 154, 334, 400, 635, 934, 1196
MflI RGATCY 1 cut(s) 1207
MhlI GDGCHC 2 cut(s) 209, 883
MlsI TGGCCA 1 cut(s) 553
MluCI AATT 5 cut(s) 186, 543, 772, 804, 907
MluNI TGGCCA 1 cut(s) 553
MlyI GAGTC 3 cut(s) 167, 507, 1024
Mox20I TGGCCA 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 941
MscI TGGCCA 1 cut(s) 553
MseI TTAA 3 cut(s) 47, 507, 996
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 553
MspA1I CMGCKG 1 cut(s) 363
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 3 cut(s) 97, 160, 888
MspR9I CCNGG 2 cut(s) 948, 982
MvaI CCWGG 2 cut(s) 948, 982
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 4 cut(s) 11, 99, 986, 1169
NdeII GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
NlaIII CATG 1 cut(s) 958
NmeAIII GCCGAG 3 cut(s) 147, 237, 495
NmuCI GTSAC 1 cut(s) 443
PceI AGGCCT 1 cut(s) 1153
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 941
PfeI GAWTC 2 cut(s) 253, 937
PflMI CCANNNNNTGG 1 cut(s) 872
PkrI GCNGC 5 cut(s) 40, 43, 475, 919, 1174
PleI GAGTC 3 cut(s) 167, 507, 1024
PpsI GAGTC 3 cut(s) 167, 507, 1024
PpuMI RGGWCCY 1 cut(s) 457
Psp124BI GAGCTC 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 946, 980
PspGI CCWGG 2 cut(s) 946, 980
PspPI GGNCC 3 cut(s) 136, 178, 457
PspPPI RGGWCCY 1 cut(s) 457
PsuI RGATCY 1 cut(s) 1207
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 6 cut(s) 158, 618, 672, 723, 896, 1001
RsaNI GTAC 6 cut(s) 157, 617, 671, 722, 895, 1000
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 883
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 47, 507, 996
SatI GCNGC 5 cut(s) 39, 42, 474, 918, 1173
Sau3AI GATC 8 cut(s) 279, 532, 556, 592, 753, 808, 1063, 1207
Sau96I GGNCC 3 cut(s) 136, 178, 457
SchI GAGTC 3 cut(s) 167, 507, 1024
ScrFI CCNGG 2 cut(s) 948, 982
SduI GDGCHC 2 cut(s) 209, 883
SfaNI GCATC 3 cut(s) 460, 904, 1120
SinI GGWCC 3 cut(s) 136, 178, 457
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 368, 506
SmoI CTYRAG 2 cut(s) 368, 506
Sse9I AATT 5 cut(s) 186, 543, 772, 804, 907
SseBI AGGCCT 1 cut(s) 1153
SsiI CCGC 7 cut(s) 18, 39, 42, 84, 126, 382, 1172
SspI AATATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 432, 854
SstI GAGCTC 1 cut(s) 883
StuI AGGCCT 1 cut(s) 1153
StyD4I CCNGG 2 cut(s) 946, 980
TaaI ACNGT 1 cut(s) 779
TaiI ACGT 2 cut(s) 218, 676
TaqI TCGA 4 cut(s) 67, 183, 270, 1182
TaqII GACCGA 1 cut(s) 209
TasI AATT 5 cut(s) 186, 543, 772, 804, 907
TatI WGTACW 2 cut(s) 894, 999
TauI GCSGC 3 cut(s) 41, 44, 1175
TfiI GAWTC 2 cut(s) 253, 937
Tru1I TTAA 3 cut(s) 47, 507, 996
Tru9I TTAA 3 cut(s) 47, 507, 996
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 2 cut(s) 473, 917
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 5 cut(s) 335, 536, 675, 690, 1063
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 872
Vha464I CTTAAG 1 cut(s) 506
VpaK11BI GGWCC 3 cut(s) 136, 178, 457
XapI RAATTY 1 cut(s) 543
XmnI GAANNNNTTC 1 cut(s) 941
XspI CTAG 2 cut(s) 432, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.