Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003777

Physical Location & Seq

Genomic Coordinates Forward (+)

9806337 .. 9806570

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG049300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCCTCGTGCACCACCGCTTTTCTCTACAACTACGCCGCCTCATTAACCTCACCTTGCTCTCCCGGCAGAACCAGAACCACCGCAAGAAGCCTCCGAAGCTCTCTCAGACCAACCACTATCACTGCCAAGCAGGACCAGAAGACGACGTTGCAGTACCGGAAGCTCGGCAACTCAGACCTCGAAATTAGCGAAATTAATCTGGGCACAATGACATTCGGTCAGCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

77

Amino Acids

8.47

Weight (kDa)

9.78

Isoelectric Point (pI)

69.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04420
fragaria_vesca	FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680
malus_domestica	MD13G1214400.v1.1 MD16G1219600.v1.1
prunus_persica	Prupe.1G039700_v2.0.a1 Prupe.1G039700_v2.0.a1 Prupe.1G040000_v2.0.a1
pyrus_communis	pycom02g18940 pycom13g18800 pycom16g18290
rosa_chinensis	RchiOBHm_Chr4g0393231 RchiOBHm_Chr4g0393291 RchiOBHm_Chr4g0393301
rosa_laevigata	RLG00000009766 RLG00000009769
rosa_multiflora	Rmu_sc0001163.1_g000032 Rmu_sc0001590.1_g000018
rosa_roxburghii	Rroxscaffold_5G00338260 Rroxscaffold_5G00338290
rosa_rugosa	Rorug04G0001900
rosa_samantha	Rh4AG046500 Rh4BG042100 Rh4CG049300 Rh4CG049500 Rh4DG043900 Rh5CG200600 Rh6BG072800
rosa_wichuraiana	Rw4G003650 Rw4G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	18, 39, 84
AfaI	GTAC	1 cut(s)	158
AhdI	GACNNNNNGTC	1 cut(s)	219
AluBI	AGCT	2 cut(s)	102, 166
AluI	AGCT	2 cut(s)	102, 166
Alw21I	GWGCWC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	10
AseI	ATTAAT	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	136
BaeGI	GKGCMC	2 cut(s)	14, 209
BauI	CACGAG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	136
BmeRI	GACNNNNNGTC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	121, 189
BseSI	GKGCMC	2 cut(s)	14, 209
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	66, 160
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	14, 209
BspACI	CCGC	3 cut(s)	18, 39, 84
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	120, 188
BssSI	CACGAG	1 cut(s)	7
Bst2BI	CACGAG	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	107, 175
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 99
BstSCI	CCNGG	1 cut(s)	64
BstSLI	GKGCMC	2 cut(s)	14, 209
BstV2I	GAAGAC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	157
CviJI	RGCY	4 cut(s)	5, 93, 102, 166
CviKI_1	RGCY	4 cut(s)	5, 93, 102, 166
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	107, 175
DriI	GACNNNNNGTC	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	232
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	66, 160
HpaII	CCGG	2 cut(s)	66, 160
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	98, 110, 178
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	12, 154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 99
HpyF3I	CTNAG	2 cut(s)	107, 175
HpySE526I	ACGT	1 cut(s)	149
LpnPI	CCDG	6 cut(s)	79, 88, 119, 152, 173, 188
MaeI	CTAG	1 cut(s)	232
MaeII	ACGT	1 cut(s)	149
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	14, 209
MluCI	AATT	2 cut(s)	186, 195
MnlI	CCTC	5 cut(s)	16, 52, 61, 104, 191
MseI	TTAA	2 cut(s)	47, 198
MspI	CCGG	2 cut(s)	66, 160
MspR9I	CCNGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	66, 99
NciI	CCSGG	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	47, 198
SatI	GCNGC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	14, 209
SetI	ASST	6 cut(s)	53, 58, 104, 152, 168, 183
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	2 cut(s)	186, 195
SsiI	CCGC	3 cut(s)	18, 39, 84
SspMI	CTAG	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	183
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	2 cut(s)	186, 195
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	47, 198
Tru9I	TTAA	2 cut(s)	47, 198
TscAI	CASTG	1 cut(s)	130
TspRI	CASTG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	198
XspI	CTAG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.