Rroxscaffold_5G00338260

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003777
Physical Location & Seq
Forward (+)
6441104 .. 6442039
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338260.1

Sequence Viewer

Length: 414 bp
ATGGCTTCGTGCGCCACCGCCTTCCTTTGCAACCACGCCGCTGCATTAACCTCACCTTACTGGCCTCAAAAGACCAGTACCACCGCAAGAAGCCTCCGGAGCTCTCTCAGACCAACCACCATCACTGCCAAGCAGGACCAGAAGACGGCATTGCAGTACCGGAAGCTCGGCGACTCGGACCTCGAAATTAGCGAAATCACTCTTGGCACAATGATGTTTGGTGAGCAAAACTCGGAGAAAGAAGCTCACGAGATTCTCATCTACGCTTTCGACAATGGGATCAACATTTTGGACACTGCTGAAGCTCACCCGATTCCAATGAAGAAGGAGACGCGGGGATTGACTGACCTCTACATTGCCAGCTGGCTAAAGTCTCAGCCCCGCGAGAAGATAATCAATGAGCTTCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

137

Amino Acids

15.35

Weight (kDa)

6.41

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 65 - 131 8.6e-08 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 334, 384
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 5 cut(s) 18, 39, 84, 334, 382
AclWI GGATC 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 2 cut(s) 79, 158
AfiI CCNNNNNNNGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 6 cut(s) 102, 166, 245, 305, 363, 403
AluI AGCT 6 cut(s) 102, 166, 245, 305, 363, 403
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 323, 378
AlwI GGATC 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 136, 178
AsuHPI GGTGA 3 cut(s) 45, 233, 299
AvaII GGWCC 2 cut(s) 136, 178
BanII GRGCYC 1 cut(s) 104
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 323, 378
BisI GCNGC 2 cut(s) 39, 42
BlsI GCNGC 2 cut(s) 40, 43
Bme18I GGWCC 2 cut(s) 136, 178
BmgT120I GGNCC 2 cut(s) 136, 178
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BsaBI GATNNNNATC 1 cut(s) 257
BsaWI WCCGGW 2 cut(s) 96, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 65, 75
Bse3DI GCAATG 2 cut(s) 149, 354
Bse8I GATNNNNATC 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 2 cut(s) 149, 354
BseMII CTCAG 2 cut(s) 121, 389
BseNI ACTGG 2 cut(s) 65, 75
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 2 cut(s) 334, 384
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 97, 160
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 323, 378
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 5 cut(s) 18, 39, 84, 334, 382
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 120, 388
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 2 cut(s) 334, 384
BspPI GGATC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 149, 354
BsrI ACTGG 2 cut(s) 65, 75
BssMI GATC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 361, 365
BstDEI CTNAG 2 cut(s) 107, 375
BstFNI CGCG 2 cut(s) 334, 384
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 2 cut(s) 323, 378
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 11, 99
BstUI CGCG 2 cut(s) 334, 384
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 64
BtsI GCAGTG 2 cut(s) 123, 294
BtsIMutI CAGTG 2 cut(s) 123, 294
Cac8I GCNNGC 2 cut(s) 361, 365
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 136, 178
CseI GACGC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 78, 157
CviQI GTAC 2 cut(s) 78, 157
DdeI CTNAG 2 cut(s) 107, 375
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 136, 178
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 323
FauI CCCGC 2 cut(s) 327, 389
Fnu4HI GCNGC 2 cut(s) 39, 42
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 39, 42
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 39, 42
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 97, 160
HgaI GACGC 1 cut(s) 340
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 3 cut(s) 173, 253, 313
HpaII CCGG 2 cut(s) 97, 160
HphI GGTGA 3 cut(s) 45, 233, 299
Hpy188I TCNGA 3 cut(s) 110, 178, 235
Hpy188III TCNNGA 2 cut(s) 97, 248
HpyAV CCTTC 2 cut(s) 31, 319
HpyCH4V TGCA 3 cut(s) 30, 44, 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 99
HpyF3I CTNAG 2 cut(s) 107, 375
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 96
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 8 cut(s) 46, 88, 110, 119, 152, 173, 349, 373
Lsp1109I GCAGC 1 cut(s) 28
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 4 cut(s) 154, 334, 398, 400
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 186
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 5 cut(s) 61, 75, 104, 191, 359
MroI TCCGGA 1 cut(s) 96
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 2 cut(s) 41, 363
MspI CCGG 2 cut(s) 97, 160
MvnI CGCG 2 cut(s) 334, 384
MwoI GCNNNNNNNGC 2 cut(s) 11, 99
NdeII GATC 1 cut(s) 279
NmeAIII GCCGAG 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 2 cut(s) 253, 313
PkrI GCNGC 2 cut(s) 40, 43
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 104
PspPI GGNCC 2 cut(s) 136, 178
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 2 cut(s) 79, 158
RsaNI GTAC 2 cut(s) 78, 157
RseI CAYNNNNRTG 1 cut(s) 212
SacI GAGCTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 39, 42
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 2 cut(s) 136, 178
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 104
SinI GGWCC 2 cut(s) 136, 178
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 1 cut(s) 186
SsiI CCGC 5 cut(s) 18, 39, 84, 334, 382
SstI GAGCTC 1 cut(s) 104
TaqI TCGA 2 cut(s) 183, 270
TasI AATT 1 cut(s) 186
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 253, 313
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 130, 301
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 335, 398
TspRI CASTG 2 cut(s) 130, 301
VpaK11BI GGWCC 2 cut(s) 136, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.