Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003777

Physical Location & Seq

Genomic Coordinates Forward (+)

2843881 .. 2848319

Gene Structure 4439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCCTCTTGCCCCACCGCCTTTTTCTGCAACCACGCAGCAACAGCAGCACCGTGGTCATCTTCCAGAACCGGAACCAGAAGAAGTTTCTGTAGACGGAGCTCTGTGAAAGCAACTATCAATGCCAAGCTCGACCAGAAGACGTCGTTGCAGTACAAGAAGCTCGGAGACTCAGACCTTGTAATTAGCGAAATCACTCTGGGAACCATGACATTCGGCGAGCAAAACACAGAGAAAGAAGCTCATGAGATTCTCAGCTACGCATTCGAAAATGGGATTAACGCTTTGGACACTGCAGAAGCTTACCCAATTCCAATGAAGAAGGAAACTCAGGGAAGCACTGATCGTTTTATCAGCAGCTGGCTCAAGTCTCAACCCCGTGATAAGGTTATTTTGGCAACAAAAATAGCTGGGTATTCGGAGATGGCAAGTTATCTGCGTGACAATGCCACGGTCTTGCGGGTGGATGCTGCAAACATTAAGGAAAGTGTAGAGAAAAGCCTTAAGCGCCTTGGCACAGATTACATTGATTTGATACAAATTCATTGGCCAGATCGCTACGCGCCACTATTTGGTGCGTATTCTTATGATTTTTCCAAATGGAGACCAAGTGTGCCATTCGTGGAGCAGCTGAAGGCTTTTCAAGAACTCATTGACGAAGGAAAGGTACGCTACATTGGTGTTTCCAATGAAACTTCATATGGAGTGATGGAATTTGTACATGCAGCTAAAGTTGAAGGACTACCAAAGATCGTCAGTATCCAAAACAGTTATAGTCTGCTAGTTAGAACTCGTTTTGAAATTGATCTTGTTGAAGTTTGCCACCCGAAAAATTACAACATTGGCTTACTGGCTTATTCTCCACTGGGTGGTGGATCTCTTACTGGAAAGTACATAGATATCAATTCCGAAGCTGCTAAAAAAGGGAGGCTGAACCTTTTCCCTGGCTACATGGAAAGATATAACAAATCTATTGCCAGGGAAGCAACAATAAAGTATATCGAGACAGCCAAGAAGCACGGGCTAACTCCGGTTCAGCTTGCACTTGGGTTTGCACGGGACCGTCCATTTGTGACAAGTTCAATTGTTGGTGCAACTTCTGTGAACCAACTGAAGGAAGACATTGATGCTTTTCTGTTGACAGAGAGGCCTTTGCCACCGGAAGTGGTGGCTGACATTGAAGATATTTTCAAGAGATACAAAGACCCTACCATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

407

Amino Acids

45.45

Weight (kDa)

8.6

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04420
fragaria_vesca	FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680
malus_domestica	MD13G1214400.v1.1 MD16G1219600.v1.1
prunus_persica	Prupe.1G039700_v2.0.a1 Prupe.1G039700_v2.0.a1 Prupe.1G040000_v2.0.a1
pyrus_communis	pycom02g18940 pycom13g18800 pycom16g18290
rosa_chinensis	RchiOBHm_Chr4g0393231 RchiOBHm_Chr4g0393291 RchiOBHm_Chr4g0393301
rosa_laevigata	RLG00000009766 RLG00000009769
rosa_multiflora	Rmu_sc0001163.1_g000032 Rmu_sc0001590.1_g000018
rosa_roxburghii	Rroxscaffold_5G00338260 Rroxscaffold_5G00338290
rosa_rugosa	Rorug04G0001900
rosa_samantha	Rh4AG046500 Rh4BG042100 Rh4CG049300 Rh4CG049500 Rh4DG043900 Rh5CG200600 Rh6BG072800
rosa_wichuraiana	Rw4G003650 Rw4G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
AccB7I	CCANNNNNTGG	2 cut(s)	572, 869
AccI	GTMKAC	1 cut(s)	94
AccII	CGCG	1 cut(s)	563
AciI	CCGC	2 cut(s)	18, 460
AclWI	GGATC	1 cut(s)	883
AcoI	YGGCCR	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	540, 713
AcuI	CTGAAG	2 cut(s)	653, 1133
AcyI	GRCGYC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	4 cut(s)	155, 669, 720, 893
AfiI	CCNNNNNNNGG	4 cut(s)	385, 572, 869, 1114
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	7 cut(s)	644, 737, 800, 815, 1083, 1181, 1192
AjnI	CCWGG	2 cut(s)	943, 977
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	4 cut(s)	162, 375, 598, 998
AlwI	GGATC	1 cut(s)	883
AlwNI	CAGNNNCTG	1 cut(s)	360
AoxI	GGCC	3 cut(s)	3, 548, 1148
ApeKI	GCWGC	7 cut(s)	38, 47, 357, 470, 628, 725, 914
ApoI	RAATTY	2 cut(s)	540, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	1052, 1084
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	2 cut(s)	510, 565
AspS9I	GGNCC	1 cut(s)	1060
AsuII	TTCGAA	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	1060
BalI	TGGCCA	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
BbsI	GAAGAC	2 cut(s)	146, 1125
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	7 cut(s)	50, 59, 369, 457, 640, 737, 901
BccI	CCATC	2 cut(s)	418, 703
BciT130I	CCWGG	2 cut(s)	945, 979
BciVI	GTATCC	1 cut(s)	770
BcoDI	GTCTC	4 cut(s)	162, 375, 598, 998
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	2 cut(s)	91, 294
BfoI	RGCGCY	1 cut(s)	511
BfrI	CTTAAG	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	7 cut(s)	39, 48, 358, 471, 629, 726, 915
BlsI	GCNGC	7 cut(s)	40, 49, 359, 472, 630, 727, 916
Bme1390I	CCNGG	2 cut(s)	945, 979
Bme18I	GGWCC	1 cut(s)	1060
BmgT120I	GGNCC	1 cut(s)	1060
BmiI	GGNNCC	3 cut(s)	76, 205, 1061
BmrFI	CCNGG	2 cut(s)	945, 979
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	2 cut(s)	457, 1117
BmuI	ACTGGG	1 cut(s)	875
BpiI	GAAGAC	2 cut(s)	146, 1125
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	5 cut(s)	53, 450, 511, 943, 978
BsaWI	WCCGGW	3 cut(s)	71, 1030, 1159
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	4 cut(s)	385, 572, 869, 1114
Bse1I	ACTGG	3 cut(s)	855, 870, 889
BseBI	CCWGG	2 cut(s)	945, 979
BseDI	CCNNGG	5 cut(s)	53, 450, 511, 943, 978
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	4 cut(s)	385, 572, 869, 1114
BseMII	CTCAG	3 cut(s)	186, 268, 344
BseNI	ACTGG	3 cut(s)	855, 870, 889
BseXI	GCAGC	7 cut(s)	50, 59, 369, 457, 640, 737, 901
BseYI	CCCAGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	3 cut(s)	5, 550, 1150
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	72, 1031, 1160
BslFI	GGGAC	1 cut(s)	1073
BslI	CCNNNNNNNGG	4 cut(s)	385, 572, 869, 1114
BsmAI	GTCTC	4 cut(s)	162, 375, 598, 998
BsmFI	GGGAC	1 cut(s)	1073
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	5, 550, 1150
Bso31I	GGTCTC	1 cut(s)	598
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	5 cut(s)	343, 553, 750, 805, 875
BspACI	CCGC	2 cut(s)	18, 460
BspANI	GGCC	3 cut(s)	5, 550, 1150
BspCNI	CTCAG	3 cut(s)	185, 267, 343
BspFNI	CGCG	1 cut(s)	563
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	76, 205, 1061
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	883
BspT104I	TTCGAA	1 cut(s)	267
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	3 cut(s)	855, 870, 889
BssECI	CCNNGG	5 cut(s)	53, 450, 511, 943, 978
BssMI	GATC	5 cut(s)	343, 553, 750, 805, 875
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	2 cut(s)	945, 979
Bst4CI	ACNGT	4 cut(s)	54, 454, 770, 1064
BstACI	GRCGYC	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	718
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	221, 362, 1041
BstDEI	CTNAG	3 cut(s)	172, 254, 330
BstDSI	CCRYGG	2 cut(s)	53, 450
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	563
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	2 cut(s)	510, 565
BstKTI	GATC	5 cut(s)	346, 556, 753, 808, 878
BstMAI	GTCTC	4 cut(s)	162, 375, 598, 998
BstMBI	GATC	5 cut(s)	343, 553, 750, 805, 875
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 47, 507, 983
BstNI	CCWGG	2 cut(s)	945, 979
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	943, 977
BstSFI	CTRYAG	2 cut(s)	91, 294
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	7 cut(s)	50, 59, 369, 457, 640, 737, 901
BstV2I	GAAGAC	2 cut(s)	146, 1125
BstX2I	RGATCY	1 cut(s)	875
BstYI	RGATCY	1 cut(s)	875
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	3 cut(s)	5, 550, 1150
BtgI	CCRYGG	2 cut(s)	53, 450
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	3 cut(s)	291, 339, 863
Cac8I	GCNNGC	3 cut(s)	221, 362, 1041
CaiI	CAGNNNCTG	1 cut(s)	360
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	2 cut(s)	510, 565
Cfr13I	GGNCC	1 cut(s)	1060
Csp6I	GTAC	4 cut(s)	154, 668, 719, 892
CviAII	CATG	4 cut(s)	208, 245, 722, 952
CviQI	GTAC	4 cut(s)	154, 668, 719, 892
DdeI	CTNAG	3 cut(s)	172, 254, 330
DpnI	GATC	5 cut(s)	345, 555, 752, 807, 877
DpnII	GATC	5 cut(s)	343, 553, 750, 805, 875
DraIII	CACNNNGTG	1 cut(s)	869
EaeI	YGGCCR	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	1150
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	598
Eco32I	GATATC	1 cut(s)	901
Eco47I	GGWCC	1 cut(s)	1060
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	653, 1133
EcoICRI	GAGCTC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	943, 977
EcoRV	GATATC	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	4 cut(s)	211, 248, 725, 955
FaqI	GGGAC	1 cut(s)	1073
FatI	CATG	4 cut(s)	207, 244, 721, 951
FauI	CCCGC	1 cut(s)	453
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	7 cut(s)	39, 48, 358, 471, 629, 726, 915
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	7 cut(s)	39, 48, 358, 471, 629, 726, 915
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	2 cut(s)	509, 564
GluI	GCNGC	7 cut(s)	39, 48, 358, 471, 629, 726, 915
GsaI	CCCAGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	3 cut(s)	5, 550, 1150
HapII	CCGG	3 cut(s)	72, 1031, 1160
HhaI	GCGC	2 cut(s)	510, 565
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	211, 248, 725, 955
Hin6I	GCGC	2 cut(s)	508, 563
HinP1I	GCGC	2 cut(s)	508, 563
HincII	GTYRAC	1 cut(s)	1140
HindII	GTYRAC	1 cut(s)	1140
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	170, 250
HpaII	CCGG	3 cut(s)	72, 1031, 1160
Hpy166II	GTNNAC	3 cut(s)	95, 1105, 1140
Hpy188I	TCNGA	4 cut(s)	167, 175, 421, 910
Hpy188III	TCNNGA	5 cut(s)	66, 245, 644, 1003, 1192
Hpy8I	GTNNAC	3 cut(s)	95, 1105, 1140
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	5 cut(s)	316, 628, 653, 731, 1108
HpyCH4III	ACNGT	4 cut(s)	54, 454, 770, 1064
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	8 cut(s)	30, 151, 296, 473, 725, 1043, 1055, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 47, 507, 983
HpyF3I	CTNAG	3 cut(s)	172, 254, 330
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	211, 248, 725, 955
HspAI	GCGC	2 cut(s)	508, 563
Kzo9I	GATC	5 cut(s)	343, 553, 750, 805, 875
LmnI	GCTCC	2 cut(s)	99, 625
Lsp1109I	GCAGC	7 cut(s)	50, 59, 369, 457, 640, 737, 901
LweI	GCATC	2 cut(s)	457, 1117
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	440, 1072
MalI	GATC	5 cut(s)	345, 555, 752, 807, 877
MboI	GATC	5 cut(s)	343, 553, 750, 805, 875
MboII	GAAGA	6 cut(s)	54, 93, 151, 331, 1130, 1193
MfeI	CAATTG	1 cut(s)	1083
MflI	RGATCY	1 cut(s)	875
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	550
MluCI	AATT	8 cut(s)	183, 309, 540, 713, 801, 832, 904, 1083
MluNI	TGGCCA	1 cut(s)	550
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	16, 921, 1140
Mox20I	TGGCCA	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	938
MscI	TGGCCA	1 cut(s)	550
MseI	TTAA	3 cut(s)	279, 480, 504
Msp20I	TGGCCA	1 cut(s)	550
MspA1I	CMGCKG	2 cut(s)	360, 631
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	3 cut(s)	72, 1031, 1160
MspR9I	CCNGG	2 cut(s)	945, 979
MunI	CAATTG	1 cut(s)	1083
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	2 cut(s)	945, 979
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	44, 47, 507, 983
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	5 cut(s)	343, 553, 750, 805, 875
NlaIII	CATG	4 cut(s)	211, 248, 725, 955
NlaIV	GGNNCC	3 cut(s)	76, 205, 1061
NmuCI	GTSAC	2 cut(s)	440, 1072
NspI	RCATGY	1 cut(s)	725
NspV	TTCGAA	1 cut(s)	267
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	1150
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	1 cut(s)	250
PflMI	CCANNNNNTGG	2 cut(s)	572, 869
PkrI	GCNGC	7 cut(s)	40, 49, 359, 472, 630, 727, 916
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	943, 977
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	943, 977
PspN4I	GGNNCC	3 cut(s)	76, 205, 1061
PspPI	GGNCC	1 cut(s)	1060
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	875
PvuII	CAGCTG	2 cut(s)	360, 631
RsaI	GTAC	4 cut(s)	155, 669, 720, 893
RsaNI	GTAC	4 cut(s)	154, 668, 719, 892
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	279, 480, 504
SatI	GCNGC	7 cut(s)	39, 48, 358, 471, 629, 726, 915
Sau3AI	GATC	5 cut(s)	343, 553, 750, 805, 875
Sau96I	GGNCC	1 cut(s)	1060
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	945, 979
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	457, 1117
SfcI	CTRYAG	2 cut(s)	91, 294
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	1 cut(s)	1060
SmlI	CTYRAG	2 cut(s)	365, 503
SmoI	CTYRAG	2 cut(s)	365, 503
Sse9I	AATT	8 cut(s)	183, 309, 540, 713, 801, 832, 904, 1083
SseBI	AGGCCT	1 cut(s)	1150
SsiI	CCGC	2 cut(s)	18, 460
SspMI	CTAG	1 cut(s)	782
SstI	GAGCTC	1 cut(s)	104
StuI	AGGCCT	1 cut(s)	1150
StyD4I	CCNGG	2 cut(s)	943, 977
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	4 cut(s)	54, 454, 770, 1064
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	132, 267, 1002
TasI	AATT	8 cut(s)	183, 309, 540, 713, 801, 832, 904, 1083
TatI	WGTACW	3 cut(s)	153, 718, 891
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	3 cut(s)	279, 480, 504
Tru9I	TTAA	3 cut(s)	279, 480, 504
TscAI	CASTG	3 cut(s)	298, 346, 870
TseFI	GTSAC	2 cut(s)	440, 1072
TseI	GCWGC	7 cut(s)	38, 47, 357, 470, 628, 725, 914
Tsp45I	GTSAC	2 cut(s)	440, 1072
TspDTI	ATGAA	4 cut(s)	332, 533, 687, 705
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	3 cut(s)	298, 346, 870
Van91I	CCANNNNNTGG	2 cut(s)	572, 869
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	1060
XapI	RAATTY	2 cut(s)	540, 713
XceI	RCATGY	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	1 cut(s)	782
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.