Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003777

Physical Location & Seq

Genomic Coordinates Forward (+)

14802346 .. 14803355

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTGGTCTTTAAGATGGTGGATGATTGCCCGTGCAACGGTGGTGTCATTGGTAATGGTGGGGCACTGACGATGGTGGGAGTTGGGCTGATGTGGCGACAAAGATATGGGGCATCGAAGGTGGTGAGCATGGTTGTGATGGAGAAATTTTTAGTTGTGGCAAAAATACGGATGGTACATCACCTTTTAACACGCATATCTCACCATTTATATAAGGAGACGACGAGTTTTCCGGCAACGGAACTTTTAATGCAAGTGGTCATTTACCACTGTGGTGGAAAGGTGTTGTGCCCTTGCATGACAGCGTGGGTTCAAACCCCATCAGTGACTAATCTAACATTTAACTTACTAACGCTATTGTTTCATTCAAAAAATTTTAAAAAAAATAAAAAATATGTGTGTGTGTGTGTGGTCCGACCCACATGCCCAACTACTACCACTCGGTTAAGATCACCAGAGTCACACAATTCTCATAGAGCTGCATTGATCTTTTCCGTCGCCATGGCTTTGTGCTCCACCGCCTTTCTCTGCAACCATGCAGCGGCAGCAGCACTGTGGTCACCTGGCAAAAGTAGAGCCAGAAGCTTCCGGCGGCGGATGAGCTCTATCATCAAAGCAACCGTCACCTCCGATGCCAAGCAAGACCTTAATACCTCGTTGCAGTACAGGAAGCTTGATGACTCGAACCATGTAATTAACGAAATCACTCTCCAAACCATGACTTTCAGTGTGCAAAACACTGAGATAAAAGCTCACGAGATTCTCTACACAGTTGAAAATGGGATTAATGCTTTCGACATTGCCGAGGCCGCGAGTGACATGGTCTACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

278

Amino Acids

30.86

Weight (kDa)

9.42

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04420
fragaria_vesca	FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680 FvH4_4g03680
malus_domestica	MD13G1214400.v1.1 MD16G1219600.v1.1
prunus_persica	Prupe.1G039700_v2.0.a1 Prupe.1G039700_v2.0.a1 Prupe.1G040000_v2.0.a1
pyrus_communis	pycom02g18940 pycom13g18800 pycom16g18290
rosa_chinensis	RchiOBHm_Chr4g0393231 RchiOBHm_Chr4g0393291 RchiOBHm_Chr4g0393301
rosa_laevigata	RLG00000009766 RLG00000009769
rosa_multiflora	Rmu_sc0001163.1_g000032 Rmu_sc0001590.1_g000018
rosa_roxburghii	Rroxscaffold_5G00338260 Rroxscaffold_5G00338290
rosa_rugosa	Rorug04G0001900
rosa_samantha	Rh4AG046500 Rh4BG042100 Rh4CG049300 Rh4CG049500 Rh4DG043900 Rh5CG200600 Rh6BG072800
rosa_wichuraiana	Rw4G003650 Rw4G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	825
AccII	CGCG	1 cut(s)	812
AciI	CCGC	5 cut(s)	519, 542, 592, 595, 810
AcsI	RAATTY	2 cut(s)	146, 373
AfaI	GTAC	2 cut(s)	177, 665
AfiI	CCNNNNNNNGG	2 cut(s)	38, 541
AgsI	TTSAA	3 cut(s)	314, 369, 776
AjnI	CCWGG	1 cut(s)	562
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	5 cut(s)	479, 585, 603, 673, 752
AluI	AGCT	5 cut(s)	479, 585, 603, 673, 752
Alw21I	GWGCWC	2 cut(s)	515, 605
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	807
ApeKI	GCWGC	4 cut(s)	479, 539, 545, 548
ApoI	RAATTY	2 cut(s)	146, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	606, 638
AseI	ATTAAT	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	6 cut(s)	136, 173, 194, 444, 552, 616
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	2 cut(s)	67, 293
BanII	GRGCYC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	755
Bbv12I	GWGCWC	2 cut(s)	515, 605
BbvI	GCAGC	4 cut(s)	466, 551, 557, 560
BccI	CCATC	5 cut(s)	10, 67, 133, 166, 328
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BciT130I	CCWGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	7 cut(s)	480, 540, 543, 546, 549, 593, 810
BlsI	GCNGC	7 cut(s)	481, 541, 544, 547, 550, 594, 811
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	2 cut(s)	122, 622
BsaJI	CCNNGG	2 cut(s)	501, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 541
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	501, 804
BseGI	GGATG	3 cut(s)	28, 177, 603
BseLI	CCNNNNNNNGG	2 cut(s)	38, 541
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	1 cut(s)	732
BseSI	GKGCMC	2 cut(s)	67, 293
BseXI	GCAGC	4 cut(s)	466, 551, 557, 560
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	1 cut(s)	809
BsiHKAI	GWGCWC	2 cut(s)	515, 605
BsiSI	CCGG	2 cut(s)	233, 589
BslI	CCNNNNNNNGG	2 cut(s)	38, 541
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	809
Bsp1286I	GDGCHC	4 cut(s)	67, 293, 515, 605
Bsp143I	GATC	2 cut(s)	449, 486
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	5 cut(s)	519, 542, 592, 595, 810
BspANI	GGCC	1 cut(s)	809
BspCNI	CTCAG	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	798
BssECI	CCNNGG	2 cut(s)	501, 804
BssMI	GATC	2 cut(s)	449, 486
BssSI	CACGAG	1 cut(s)	755
BssT1I	CCWWGG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	5 cut(s)	41, 272, 555, 622, 772
BstDEI	CTNAG	1 cut(s)	741
BstDSI	CCRYGG	1 cut(s)	501
BstEII	GGTNACC	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	28, 177, 603
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	2 cut(s)	452, 489
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	449, 486
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 545, 548, 809
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	562
BstSLI	GKGCMC	2 cut(s)	67, 293
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	4 cut(s)	466, 551, 557, 560
BstXI	CCANNNNNNTGG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	809
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	28, 177, 603
BtsIMutI	CAGTG	6 cut(s)	65, 268, 330, 551, 733, 738
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	176, 664
CviAII	CATG	8 cut(s)	130, 298, 423, 502, 536, 689, 718, 820
CviJI	RGCY	9 cut(s)	88, 479, 506, 578, 585, 603, 673, 752, 809
CviKI_1	RGCY	9 cut(s)	88, 479, 506, 578, 585, 603, 673, 752, 809
CviQI	GTAC	2 cut(s)	176, 664
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	2 cut(s)	451, 488
DpnII	GATC	2 cut(s)	449, 486
DraI	TTTAAA	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	610
Ecl136II	GAGCTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	603
Eco91I	GGTNACC	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	603
EcoO65I	GGTNACC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	8 cut(s)	133, 301, 426, 505, 539, 692, 721, 823
FatI	CATG	8 cut(s)	129, 297, 422, 501, 535, 688, 717, 819
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	7 cut(s)	480, 540, 543, 546, 549, 593, 810
FokI	GGATG	3 cut(s)	35, 184, 610
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	7 cut(s)	480, 540, 543, 546, 549, 593, 810
GluI	GCNGC	7 cut(s)	480, 540, 543, 546, 549, 593, 810
HaeIII	GGCC	1 cut(s)	809
HapII	CCGG	2 cut(s)	233, 589
Hin1II	CATG	8 cut(s)	133, 301, 426, 505, 539, 692, 721, 823
HindIII	AAGCTT	2 cut(s)	583, 671
HinfI	GANTC	3 cut(s)	458, 680, 760
HpaII	CCGG	2 cut(s)	233, 589
HphI	GGTGA	6 cut(s)	136, 173, 194, 444, 552, 616
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188I	TCNGA	2 cut(s)	416, 631
Hpy188III	TCNNGA	1 cut(s)	755
Hpy8I	GTNNAC	1 cut(s)	826
Hpy99I	CGWCG	2 cut(s)	226, 500
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	5 cut(s)	41, 272, 555, 622, 772
HpyCH4V	TGCA	8 cut(s)	36, 253, 297, 482, 531, 539, 661, 733
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 545, 548, 809
HpyF3I	CTNAG	1 cut(s)	741
Hsp92II	CATG	8 cut(s)	133, 301, 426, 505, 539, 692, 721, 823
Kzo9I	GATC	2 cut(s)	449, 486
LmnI	GCTCC	1 cut(s)	518
LpnPI	CCDG	7 cut(s)	246, 468, 549, 576, 592, 602, 652
Lsp1109I	GCAGC	4 cut(s)	466, 551, 557, 560
LweI	GCATC	2 cut(s)	122, 622
MaeIII	GTNAC	5 cut(s)	325, 459, 558, 622, 815
MalI	GATC	2 cut(s)	451, 488
MboI	GATC	2 cut(s)	449, 486
MhlI	GDGCHC	4 cut(s)	67, 293, 515, 605
MluCI	AATT	4 cut(s)	146, 373, 466, 693
MlyI	GAGTC	2 cut(s)	467, 674
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	637, 664, 799
MslI	CAYNNNNRTG	2 cut(s)	134, 273
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	2 cut(s)	233, 589
MspR9I	CCNGG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	4 cut(s)	94, 545, 548, 809
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	449, 486
NlaIII	CATG	8 cut(s)	133, 301, 426, 505, 539, 692, 721, 823
NmeAIII	GCCGAG	1 cut(s)	829
NmuCI	GTSAC	5 cut(s)	325, 459, 558, 622, 815
NspI	RCATGY	1 cut(s)	426
OliI	CACNNNNGTG	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PfeI	GAWTC	1 cut(s)	760
PflFI	GACNNNGTC	1 cut(s)	821
PkrI	GCNGC	7 cut(s)	481, 541, 544, 547, 550, 594, 811
PleI	GAGTC	2 cut(s)	466, 674
PpsI	GAGTC	2 cut(s)	466, 674
PshBI	ATTAAT	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	562
PspEI	GGTNACC	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	412
PsyI	GACNNNGTC	1 cut(s)	821
RsaI	GTAC	2 cut(s)	177, 665
RsaNI	GTAC	2 cut(s)	176, 664
RseI	CAYNNNNRTG	2 cut(s)	134, 273
SacI	GAGCTC	1 cut(s)	605
SatI	GCNGC	7 cut(s)	480, 540, 543, 546, 549, 593, 810
Sau3AI	GATC	2 cut(s)	449, 486
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	2 cut(s)	467, 674
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	4 cut(s)	67, 293, 515, 605
SfaNI	GCATC	2 cut(s)	122, 622
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	2 cut(s)	134, 273
Sse9I	AATT	4 cut(s)	146, 373, 466, 693
SsiI	CCGC	5 cut(s)	519, 542, 592, 595, 810
SstI	GAGCTC	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	5 cut(s)	41, 272, 555, 622, 772
TaqI	TCGA	3 cut(s)	116, 683, 795
TasI	AATT	4 cut(s)	146, 373, 466, 693
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	3 cut(s)	545, 595, 812
TfiI	GAWTC	1 cut(s)	760
TscAI	CASTG	6 cut(s)	72, 275, 330, 558, 733, 745
TseFI	GTSAC	5 cut(s)	325, 459, 558, 622, 815
TseI	GCWGC	4 cut(s)	479, 539, 545, 548
Tsp45I	GTSAC	5 cut(s)	325, 459, 558, 622, 815
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	3 cut(s)	184, 254, 484
TspRI	CASTG	6 cut(s)	72, 275, 330, 558, 733, 745
Tth111I	GACNNNGTC	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	786
XapI	RAATTY	2 cut(s)	146, 373
XceI	RCATGY	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.