Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

3405813 .. 3409998

Gene Structure 4186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03900.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGACGACGGAATCCGATCCCGCGACCAGAAAGTGGTCCCTGAACGACTTCGAGATCGGGAAGCCGCTCGGCAGAGGCAAGTTCGGGCGGGTCTACGTGGCCCGAGAAGCCAAGAGCAAGTACGTGGTGGCGCTGAAGGTGATCTTCAAGAAGCAGATAGAGAAGTACAGGATCCACCACCAGCTGAGGAGAGAGATGGAGATCCAGACTAGTCTACGGCACCCAAACATTCTCCGCCTGTTCGGCTGGTTTCACGATGAAGAGCGCGTCGTGCTGATTCTCGAGTACGCGCACGGCGGCGAGCTGTATGGGCTGCTCAGGGAGAGTACTTATCTCTCTGAGAAGCAGGCCGCCACGTACATACTGAGCTTGGCGCAGGCGTTGGCATATTGTCACGAGAAGCATGTGATACATAGGGATATCAAGCCTGAAAATTTGTTGCTTGATCATGAGGGTCGACTGAAAATTGCAGACTTCGGATGGTCTGTACAATCAAGCAACAAGAGAAAAACAATGTGTGGAACGTTAGATTATTTAGCACCAGAAATGGTGGAGAATAGAGCTCATGATTATGCAGTGGATAACTGGACTTTGGGAGTTCTCTGCTATGAGTTTCTTTATGGAACTCCTCCATTCGAGGCTGAAAGTCAAAGAGATACTTTCAGGAGGATTACAAACATTGACCTGTGCTTTCCTTCTTACCCTCAAGTTTCTGCTGAAGCTAAACATCTCATTAGCCAGCTTCTAGTGAAGGACTCCTCTAAGAGGCTATCTCTTCAGAAGATCATGGAACACCCTTGGATAATGAAGAATGCAGATCCTTCTGGAATCTGCAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

282

Amino Acids

32.6

Weight (kDa)

8.66

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	19 - 294	1.2e-39	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	59 - 298	3e-70	Protein kinase domain
Kinase-like	PF14531	140 - 236	8.4e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccBSI	CCGCTC	1 cut(s)	70
AccI	GTMKAC	3 cut(s)	96, 217, 460
AccII	CGCG	3 cut(s)	26, 270, 293
AciI	CCGC	6 cut(s)	24, 68, 91, 238, 300, 354
AclI	AACGTT	1 cut(s)	527
AclWI	GGATC	5 cut(s)	14, 169, 182, 199, 815
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	3 cut(s)	158, 741, 764
AfaI	GTAC	6 cut(s)	125, 170, 290, 331, 362, 492
AfiI	CCNNNNNNNGG	2 cut(s)	36, 768
AgsI	TTSAA	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	212
AluBI	AGCT	6 cut(s)	187, 307, 372, 566, 725, 745
AluI	AGCT	6 cut(s)	187, 307, 372, 566, 725, 745
Alw21I	GWGCWC	1 cut(s)	568
AlwI	GGATC	5 cut(s)	14, 169, 182, 199, 815
Ama87I	CYCGRG	2 cut(s)	105, 284
AoxI	GGCC	2 cut(s)	102, 351
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	4 cut(s)	136, 270, 295, 379
AspS9I	GGNCC	2 cut(s)	39, 103
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	2 cut(s)	105, 284
AvaII	GGWCC	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	568
BauI	CACGAG	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	568
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	2 cut(s)	193, 477
BceAI	ACGGC	2 cut(s)	236, 313
BclI	TGATCA	1 cut(s)	448
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 749
BfoI	RGCGCY	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	4 cut(s)	68, 301, 317, 354
BlsI	GCNGC	4 cut(s)	69, 302, 318, 355
BmcAI	AGTACT	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	2 cut(s)	105, 284
BmgT120I	GGNCC	2 cut(s)	39, 103
BmiI	GGNNCC	3 cut(s)	41, 176, 224
BplI	GAGNNNNNCTC	2 cut(s)	760, 792
Bpu10I	CCTNAGC	2 cut(s)	188, 320
BpuEI	CTTGAG	1 cut(s)	693
BsaAI	YACGTR	3 cut(s)	100, 127, 360
BsaBI	GATNNNNATC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 768
Bse1I	ACTGG	1 cut(s)	593
Bse8I	GATNNNNATC	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	800
BseGI	GGATG	1 cut(s)	488
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	2 cut(s)	36, 768
BseMII	CTCAG	4 cut(s)	179, 333, 334, 359
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	3 cut(s)	205, 621, 751
BseXI	GCAGC	1 cut(s)	303
Bsh1236I	CGCG	3 cut(s)	26, 270, 293
BshFI	GGCC	2 cut(s)	104, 353
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	2 cut(s)	105, 284
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	36, 768
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	104, 353
BsoBI	CYCGRG	2 cut(s)	105, 284
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
BspACI	CCGC	6 cut(s)	24, 68, 91, 238, 300, 354
BspANI	GGCC	2 cut(s)	104, 353
BspCNI	CTCAG	4 cut(s)	180, 333, 334, 360
BspFNI	CGCG	3 cut(s)	26, 270, 293
BspHI	TCATGA	2 cut(s)	451, 568
BspLI	GGNNCC	3 cut(s)	41, 176, 224
BspPI	GGATC	5 cut(s)	14, 169, 182, 199, 815
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	222
BsrBI	CCGCTC	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	800
BssMI	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	1 cut(s)	800
Bst2BI	CACGAG	1 cut(s)	398
Bst6I	CTCTTC	2 cut(s)	258, 783
BstAUI	TGTACA	1 cut(s)	490
BstBAI	YACGTR	3 cut(s)	100, 127, 360
BstC8I	GCNNGC	4 cut(s)	305, 351, 381, 743
BstDEI	CTNAG	5 cut(s)	188, 320, 342, 368, 765
BstENI	CCTNNNNNAGG	1 cut(s)	766
BstF5I	GGATG	1 cut(s)	488
BstFNI	CGCG	3 cut(s)	26, 270, 293
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	4 cut(s)	136, 270, 295, 379
BstKTI	GATC	8 cut(s)	22, 60, 147, 177, 207, 451, 789, 823
BstMBI	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 246, 274, 313
BstNSI	RCATGY	1 cut(s)	410
BstUI	CGCG	3 cut(s)	26, 270, 293
BstV1I	GCAGC	1 cut(s)	303
BstX2I	RGATCY	3 cut(s)	174, 204, 820
BstYI	RGATCY	3 cut(s)	174, 204, 820
BsuRI	GGCC	2 cut(s)	104, 353
BtsCI	GGATG	1 cut(s)	488
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	4 cut(s)	305, 351, 381, 743
CciI	TCATGA	2 cut(s)	451, 568
CfoI	GCGC	4 cut(s)	136, 270, 295, 379
Cfr13I	GGNCC	2 cut(s)	39, 103
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	6 cut(s)	124, 169, 289, 330, 361, 491
CviAII	CATG	4 cut(s)	407, 452, 569, 790
CviQI	GTAC	6 cut(s)	124, 169, 289, 330, 361, 491
DdeI	CTNAG	5 cut(s)	188, 320, 342, 368, 765
DpnI	GATC	8 cut(s)	21, 59, 146, 176, 206, 450, 788, 822
DpnII	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
Eam1104I	CTCTTC	2 cut(s)	258, 783
EarI	CTCTTC	2 cut(s)	258, 783
EciI	GGCGGA	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	800
Eco24I	GRGCYC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	566
Eco57I	CTGAAG	3 cut(s)	158, 741, 764
Eco88I	CYCGRG	2 cut(s)	105, 284
EcoICRI	GAGCTC	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	766
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	800
EcoT38I	GRGCYC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	800
FaeI	CATG	4 cut(s)	410, 455, 572, 793
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 646, 678
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	4 cut(s)	406, 451, 568, 789
FauI	CCCGC	2 cut(s)	31, 84
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	3 cut(s)	96, 217, 460
Fnu4HI	GCNGC	4 cut(s)	68, 301, 317, 354
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	4 cut(s)	68, 301, 317, 354
FspBI	CTAG	2 cut(s)	213, 749
GlaI	GCGC	4 cut(s)	135, 269, 294, 378
GluI	GCNGC	4 cut(s)	68, 301, 317, 354
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	104, 353
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	4 cut(s)	136, 270, 295, 379
Hin1II	CATG	4 cut(s)	410, 455, 572, 793
Hin6I	GCGC	4 cut(s)	134, 268, 293, 377
HinP1I	GCGC	4 cut(s)	134, 268, 293, 377
HincII	GTYRAC	1 cut(s)	461
HindII	GTYRAC	1 cut(s)	461
HinfI	GANTC	4 cut(s)	14, 280, 758, 831
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	97, 218, 461
Hpy188I	TCNGA	4 cut(s)	19, 343, 482, 783
Hpy8I	GTNNAC	3 cut(s)	97, 218, 461
Hpy99I	CGWCG	3 cut(s)	10, 13, 275
HpyAV	CCTTC	4 cut(s)	133, 708, 748, 834
HpyCH4IV	ACGT	4 cut(s)	99, 126, 359, 527
HpyCH4V	TGCA	4 cut(s)	473, 578, 818, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 246, 274, 313
HpyF3I	CTNAG	5 cut(s)	188, 320, 342, 368, 765
HpySE526I	ACGT	4 cut(s)	99, 126, 359, 527
Hsp92II	CATG	4 cut(s)	410, 455, 572, 793
HspAI	GCGC	4 cut(s)	134, 268, 293, 377
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
LguI	GCTCTTC	1 cut(s)	258
Lsp1109I	GCAGC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	213, 749
MaeII	ACGT	4 cut(s)	99, 126, 359, 527
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	8 cut(s)	21, 59, 146, 176, 206, 450, 788, 822
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
MboII	GAAGA	5 cut(s)	139, 275, 770, 796, 823
MflI	RGATCY	3 cut(s)	174, 204, 820
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	3 cut(s)	436, 468, 841
MlyI	GAGTC	1 cut(s)	752
MnlI	CCTC	9 cut(s)	71, 183, 448, 634, 642, 663, 717, 762, 772
MroXI	GAANNNNTTC	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	820
MvnI	CGCG	3 cut(s)	26, 270, 293
MwoI	GCNNNNNNNGC	4 cut(s)	110, 246, 274, 313
NdeII	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
NlaIII	CATG	4 cut(s)	410, 455, 572, 793
NlaIV	GGNNCC	3 cut(s)	41, 176, 224
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	2 cut(s)	451, 568
PciSI	GCTCTTC	1 cut(s)	258
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	14, 280, 831
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	69, 302, 318, 355
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
Ppu21I	YACGTR	3 cut(s)	100, 127, 360
Psp124BI	GAGCTC	1 cut(s)	568
Psp1406I	AACGTT	1 cut(s)	527
PspN4I	GGNNCC	3 cut(s)	41, 176, 224
PspPI	GGNCC	2 cut(s)	39, 103
PsuI	RGATCY	3 cut(s)	174, 204, 820
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	6 cut(s)	125, 170, 290, 331, 362, 492
RsaNI	GTAC	6 cut(s)	124, 169, 289, 330, 361, 491
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	568
SalI	GTCGAC	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	258
SatI	GCNGC	4 cut(s)	68, 301, 317, 354
Sau3AI	GATC	8 cut(s)	19, 57, 144, 174, 204, 448, 786, 820
Sau96I	GGNCC	2 cut(s)	39, 103
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	568
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	284, 708
SmoI	CTYRAG	2 cut(s)	284, 708
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	3 cut(s)	436, 468, 841
SsiI	CCGC	6 cut(s)	24, 68, 91, 238, 300, 354
SspMI	CTAG	2 cut(s)	213, 749
SstI	GAGCTC	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	800
TaiI	ACGT	4 cut(s)	102, 129, 362, 530
TaqI	TCGA	4 cut(s)	54, 285, 460, 639
TasI	AATT	3 cut(s)	436, 468, 841
TatI	WGTACW	3 cut(s)	168, 329, 490
TauI	GCSGC	3 cut(s)	70, 303, 356
TfiI	GAWTC	3 cut(s)	14, 280, 831
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	276, 824
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	766
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	1 cut(s)	410
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	3 cut(s)	96, 217, 460
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	213, 749
ZrmI	AGTACT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.