Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Forward (+)

22911528 .. 22913323

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028441

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGGAGACCGAACCCGAAACCCAGAAACCCCAAGAAACCCGAAAGAGGGGAGATTGGTCCTTAAAGGACTTCGAGATCGGAAAGCCGCTGGGCAAAGGCAAGTTCGGGCGGGTCTACGTCGCCCGAGAAGTCAAGAGCCAATACGTGGTGGCATTGAAGGTGTTGTTCAAGAAGCAGATAAAGAAGTACAACATTCACCACCAGCTGAAGAGAGAGATGGAGATTCAGACGAGTCTGAGGCACCCCAACATTCTTCGTCTCTATGGTTGGTTCCATGATGACGAGCGCATCGTGTTGATTCTTGAGTACGCTCATGGCGGTGAGCTTTATGGCCTTTTGAGGGATTGTACCTACTTTACTGAGAAACGAGCCGCGACTTATATATTGAGCTTAGCGGAAGCTTTGGCCTATTGTCATGAGAAGGATGTGATTCATAGGGACATTAAGCCTGAAAACTTGCTGCTTGATCATGAGGGTCGATTGAAAATTGCAGACTTTGGATGGTCTGTGCAGTCAAAGAATAAGAGACGCACCATGTGTGGAACTCTGGATTACTTAGCCCCAGAACTGGTGGAGAATAAAGCTCATGACTACGCAGTCGATAACTGGACTTTGGGCATTCTTTGCTATGAGTTTCTCTTTGGCGTTCCTCCCTTTGAGGCTGAAAGTCAAAAAGATACATTTCAAAGGATAGTGAAGGTTGACCTGAGCTTCCCTGCAACACCTCAAGTTTCTGCTGAAGCCAAAGACCTCATTACCAAGCTTCTCGTGAAGGACATCTCAAAGAGGCTCTCTCTTCAGAAGATCATGGAACACCCATGGATAGTTAAGAATGCAGATCCTACTGGTATCTGCAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

289

Amino Acids

33.41

Weight (kDa)

8.61

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 276	5.6e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	26 - 272	9.7e-43	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	122 - 219	3.1e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	377
AciI	CCGC	6 cut(s)	5, 89, 112, 321, 375, 398
AclWI	GGATC	1 cut(s)	836
AcuI	CTGAAG	3 cut(s)	230, 762, 785
AdeI	CACNNNGTG	1 cut(s)	540
AfaI	GTAC	3 cut(s)	191, 311, 352
AfiI	CCNNNNNNNGG	5 cut(s)	48, 49, 148, 343, 571
AgsI	TTSAA	4 cut(s)	160, 172, 487, 689
AluBI	AGCT	7 cut(s)	208, 328, 393, 404, 587, 714, 766
AluI	AGCT	7 cut(s)	208, 328, 393, 404, 587, 714, 766
Alw26I	GTCTC	3 cut(s)	2, 266, 523
AlwI	GGATC	1 cut(s)	836
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	334, 408
ApeKI	GCWGC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	191, 335
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	214, 498
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	3 cut(s)	2, 266, 523
BfaI	CTAG	1 cut(s)	865
BisI	GCNGC	3 cut(s)	89, 375, 464
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	3 cut(s)	90, 376, 465
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	245, 275
BmsI	GCATC	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu10I	CCTNAGC	1 cut(s)	710
Bpu1102I	GCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	2 cut(s)	326, 714
BsaAI	YACGTR	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 49, 148, 343, 571
Bse1I	ACTGG	3 cut(s)	576, 614, 853
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	2 cut(s)	433, 509
BseLI	CCNNNNNNNGG	5 cut(s)	48, 49, 148, 343, 571
BseMII	CTCAG	3 cut(s)	230, 354, 701
BseNI	ACTGG	3 cut(s)	576, 614, 853
BseXI	GCAGC	1 cut(s)	450
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	533
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	336, 410
BshNI	GGYRCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	5 cut(s)	48, 49, 148, 343, 571
BsmAI	GTCTC	3 cut(s)	2, 266, 523
BsmBI	CGTCTC	2 cut(s)	266, 523
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	2 cut(s)	621, 841
BsnI	GGCC	2 cut(s)	336, 410
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	4 cut(s)	78, 469, 807, 841
Bsp1720I	GCTNAGC	1 cut(s)	394
Bsp19I	CCATGG	1 cut(s)	821
BspACI	CCGC	6 cut(s)	5, 89, 112, 321, 375, 398
BspANI	GGCC	2 cut(s)	336, 410
BspCNI	CTCAG	3 cut(s)	231, 355, 702
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	3 cut(s)	418, 472, 589
BspLI	GGNNCC	2 cut(s)	245, 275
BspPI	GGATC	1 cut(s)	836
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	2
BsrI	ACTGG	3 cut(s)	576, 614, 853
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	4 cut(s)	78, 469, 807, 841
BssSI	CACGAG	1 cut(s)	770
BssT1I	CCWWGG	1 cut(s)	821
Bst2BI	CACGAG	1 cut(s)	770
Bst6I	CTCTTC	2 cut(s)	206, 804
BstAPI	GCANNNNNTGC	1 cut(s)	627
BstBAI	YACGTR	1 cut(s)	148
BstDEI	CTNAG	5 cut(s)	239, 363, 394, 559, 710
BstDSI	CCRYGG	1 cut(s)	821
BstF5I	GGATG	2 cut(s)	433, 509
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	4 cut(s)	81, 472, 810, 844
BstMAI	GTCTC	3 cut(s)	2, 266, 523
BstMBI	GATC	4 cut(s)	78, 469, 807, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BsuRI	GGCC	2 cut(s)	336, 410
BtgI	CCRYGG	1 cut(s)	821
BtsCI	GGATG	2 cut(s)	433, 509
CciI	TCATGA	3 cut(s)	418, 472, 589
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	190, 310, 351
CviAII	CATG	8 cut(s)	278, 317, 419, 473, 538, 590, 811, 822
CviQI	GTAC	3 cut(s)	190, 310, 351
DdeI	CTNAG	5 cut(s)	239, 363, 394, 559, 710
DpnI	GATC	4 cut(s)	80, 471, 809, 843
DpnII	GATC	4 cut(s)	78, 469, 807, 841
DraIII	CACNNNGTG	1 cut(s)	540
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	2 cut(s)	206, 804
EarI	CTCTTC	2 cut(s)	206, 804
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	821
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	3 cut(s)	230, 762, 785
Eco88I	CYCGRG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	821
ErhI	CCWWGG	1 cut(s)	821
Esp3I	CGTCTC	2 cut(s)	266, 523
FaeI	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	8 cut(s)	277, 316, 418, 472, 537, 589, 810, 821
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	89, 375, 464
FokI	GGATG	2 cut(s)	440, 516
Fsp4HI	GCNGC	3 cut(s)	89, 375, 464
FspBI	CTAG	1 cut(s)	865
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	3 cut(s)	89, 375, 464
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	336, 410
HgaI	GACGC	1 cut(s)	540
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	2 cut(s)	402, 764
HinfI	GANTC	4 cut(s)	226, 235, 301, 433
HphI	GGTGA	2 cut(s)	191, 335
Hpy166II	GTNNAC	2 cut(s)	118, 706
Hpy188I	TCNGA	4 cut(s)	83, 231, 240, 804
Hpy188III	TCNNGA	9 cut(s)	76, 136, 172, 305, 419, 473, 551, 590, 772
Hpy8I	GTNNAC	2 cut(s)	118, 706
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	154, 418, 694, 769
HpyCH4IV	ACGT	2 cut(s)	120, 147
HpyCH4V	TGCA	5 cut(s)	494, 514, 722, 839, 858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	5 cut(s)	239, 363, 394, 559, 710
HpySE526I	ACGT	2 cut(s)	120, 147
Hsp92II	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	78, 469, 807, 841
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	865
MaeII	ACGT	2 cut(s)	120, 147
MalI	GATC	4 cut(s)	80, 471, 809, 843
MboI	GATC	4 cut(s)	78, 469, 807, 841
MboII	GAAGA	4 cut(s)	223, 248, 791, 817
MflI	RGATCY	1 cut(s)	841
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	42, 234, 336, 469, 655, 663, 738, 764, 783
MseI	TTAA	3 cut(s)	65, 447, 831
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	91, 208
Mva1269I	GAATGC	2 cut(s)	621, 841
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	627
NcoI	CCATGG	1 cut(s)	821
NdeII	GATC	4 cut(s)	78, 469, 807, 841
NlaIII	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
NlaIV	GGNNCC	2 cut(s)	245, 275
PagI	TCATGA	3 cut(s)	418, 472, 589
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	2 cut(s)	621, 841
PfeI	GAWTC	3 cut(s)	226, 301, 433
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	90, 376, 465
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Ppu21I	YACGTR	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	245, 275
PspPI	GGNCC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	3 cut(s)	191, 311, 352
RsaNI	GTAC	3 cut(s)	190, 310, 351
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	65, 447, 831
SatI	GCNGC	3 cut(s)	89, 375, 464
Sau3AI	GATC	4 cut(s)	78, 469, 807, 841
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	300
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	305, 729
SmoI	CTYRAG	2 cut(s)	305, 729
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	6 cut(s)	5, 89, 112, 321, 375, 398
SspMI	CTAG	1 cut(s)	865
StyI	CCWWGG	1 cut(s)	821
TaiI	ACGT	2 cut(s)	123, 150
TaqI	TCGA	3 cut(s)	75, 481, 603
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	489
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	2 cut(s)	91, 377
TfiI	GAWTC	3 cut(s)	226, 301, 433
Tru1I	TTAA	3 cut(s)	65, 447, 831
Tru9I	TTAA	3 cut(s)	65, 447, 831
TseI	GCWGC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.