Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

45365830 .. 45369526

Gene Structure 3697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATACACTCTCGCTCTCACTCTCACTCTTAGTCCCAATCTCTCTCGCTCTCGCTCTCACCTCTCACTTTCGCTCTCACTCTCTCTCTCTCTCTCCGCCGGTCCAGCTCAAAGTCGCTACTTGGTCCGGTAGTTTACTCTCTCCGCCGCCTCAGCTCGAAGTCGATTTCAATTATCTTGAGAAGCCATCGCCACCACCAAGATCTCTCTCACTATCGCCGCCGGTCTCGGGATCTCTCTCACTATCGCTGCCGGTGTCAGTGTCAAGAAATATAAAGAGCCTCCATCTTCTATTGGAGATGCCTCCAATAGGATTAATAAAAGGGGCGATACAGTGGATGAGAAGATCAAGAAGCTTGATGTTGAACTTAATAGATACAGAGAGCATGTCAAGAAGACAAGGAGCTTTCAGCAAAAGTTGCCAAGATTGTGGGAGCGACTCCCATTGTTACAGAAGATCACACTCAGCCATCAAAATCAGCAGCAGCAAACACTTGACACTTGAGATGCTGGAGAAGGAGGAGAAGCTCCTTGGCAGCGTTGTAATAAAGAAACACTACTGTTTCTATGAGTCGCATTTGTGTGCACTGAAAATGGAGCAAGGCCAACCAGAGGTTTTGCAAATTTCGGGACAAAATTTTTTGGGAGATGAGAAGGGTTGGATGCCGACTATAGTGAGGGAGGGAGACGGGAAAGAAGAAGAAAAAGAGAGACAGGGAGAAGAAGAGAAGAAAGAAAAGAAGATGGGGGAGTCGGATCGAATAAAAAGAAAGGGAACAGGGAGGAAGGAAGAGAAAAGGAAGAGAGAAGAAAGAGAAGAGAGGGAGGAGGAGAAAAGCAAAGGAATCAGGGAGAAAAAAGAAGAAGAAGAGAAAAGAGGGAGCACGGGAAAGAGAAAGAAAATAGGGAAAGAAAAACAGAAGAGAGTAGTGATCTGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

35.6

Weight (kDa)

9.39

Isoelectric Point (pI)

69.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	98, 146, 149, 221
AclWI	GGATC	2 cut(s)	241, 765
AcsI	RAATTY	2 cut(s)	624, 637
AfiI	CCNNNNNNNGG	3 cut(s)	230, 311, 613
AgsI	TTSAA	2 cut(s)	172, 367
AluBI	AGCT	5 cut(s)	109, 157, 357, 407, 529
AluI	AGCT	5 cut(s)	109, 157, 357, 407, 529
Alw21I	GWGCWC	2 cut(s)	589, 887
Alw26I	GTCTC	3 cut(s)	232, 681, 706
Alw44I	GTGCAC	1 cut(s)	585
AlwI	GGATC	2 cut(s)	241, 765
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	604
ApaLI	GTGCAC	1 cut(s)	585
ApeKI	GCWGC	4 cut(s)	250, 483, 486, 537
ApoI	RAATTY	2 cut(s)	624, 637
AseI	ATTAAT	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	103, 126
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	103, 126
BaeGI	GKGCMC	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	403
Bbv12I	GWGCWC	2 cut(s)	589, 887
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	4 cut(s)	237, 495, 498, 549
BccI	CCATC	4 cut(s)	196, 294, 479, 739
BcoDI	GTCTC	3 cut(s)	232, 681, 706
BfmI	CTRYAG	1 cut(s)	672
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	6 cut(s)	149, 221, 251, 484, 487, 538
BlsI	GCNGC	6 cut(s)	150, 222, 252, 485, 488, 539
Bme18I	GGWCC	2 cut(s)	103, 126
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	103, 126
BmsI	GCATC	3 cut(s)	291, 498, 654
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	200, 524
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	532
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 311, 613
Bse118I	RCCGGY	3 cut(s)	100, 223, 253
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	345, 669
BseLI	CCNNNNNNNGG	3 cut(s)	230, 311, 613
BseMII	CTCAG	2 cut(s)	167, 480
BseRI	GAGGAG	3 cut(s)	536, 842, 845
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	4 cut(s)	237, 495, 498, 549
BshFI	GGCC	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	589, 887
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	101, 129, 224, 254
BslFI	GGGAC	2 cut(s)	20, 645
BslI	CCNNNNNNNGG	3 cut(s)	230, 311, 613
BsmAI	GTCTC	3 cut(s)	232, 681, 706
BsmBI	CGTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	20, 645
BsnI	GGCC	1 cut(s)	606
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	589, 887
Bsp143I	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
BspACI	CCGC	4 cut(s)	98, 146, 149, 221
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	2 cut(s)	166, 479
BspPI	GGATC	2 cut(s)	241, 765
BspTNI	GGTCTC	1 cut(s)	232
BsrFI	RCCGGY	3 cut(s)	100, 223, 253
BssAI	RCCGGY	3 cut(s)	100, 223, 253
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
BssT1I	CCWWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	336, 563
Bst6I	CTCTTC	6 cut(s)	720, 786, 797, 813, 864, 917
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstDEI	CTNAG	3 cut(s)	31, 153, 466
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	345, 669
BstKTI	GATC	6 cut(s)	206, 236, 350, 461, 760, 936
BstMAI	GTCTC	3 cut(s)	232, 681, 706
BstMBI	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 154, 420
BstNSI	RCATGY	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	4 cut(s)	237, 495, 498, 549
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	2 cut(s)	203, 233
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	2 cut(s)	203, 233
BsuRI	GGCC	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	345, 669
BtsIMutI	CAGTG	3 cut(s)	267, 341, 587
Cfr10I	RCCGGY	3 cut(s)	100, 223, 253
Cfr13I	GGNCC	2 cut(s)	103, 126
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	9 cut(s)	109, 157, 187, 282, 357, 407, 470, 529, 606
CviKI_1	RGCY	9 cut(s)	109, 157, 187, 282, 357, 407, 470, 529, 606
DdeI	CTNAG	3 cut(s)	31, 153, 466
DpnI	GATC	6 cut(s)	205, 235, 349, 460, 759, 935
DpnII	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
Eam1104I	CTCTTC	6 cut(s)	720, 786, 797, 813, 864, 917
EarI	CTCTTC	6 cut(s)	720, 786, 797, 813, 864, 917
EciI	GGCGGA	2 cut(s)	87, 135
Eco130I	CCWWGG	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	103, 126
Eco88I	CYCGRG	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	1 cut(s)	391
FaiI	YATR	5 cut(s)	275, 389, 570, 674, 943
FaqI	GGGAC	2 cut(s)	20, 645
FatI	CATG	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	149, 221, 251, 484, 487, 538
FokI	GGATG	2 cut(s)	352, 676
Fsp4HI	GCNGC	6 cut(s)	149, 221, 251, 484, 487, 538
GluI	GCNGC	6 cut(s)	149, 221, 251, 484, 487, 538
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	4 cut(s)	101, 129, 224, 254
Hin1II	CATG	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	4 cut(s)	440, 572, 752, 846
HpaII	CCGG	4 cut(s)	101, 129, 224, 254
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	137, 587
Hpy188I	TCNGA	1 cut(s)	757
Hpy188III	TCNNGA	6 cut(s)	179, 231, 267, 351, 393, 630
Hpy8I	GTNNAC	2 cut(s)	137, 587
HpyAV	CCTTC	3 cut(s)	511, 649, 781
HpyCH4III	ACNGT	2 cut(s)	336, 563
HpyCH4V	TGCA	2 cut(s)	587, 622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 154, 420
HpyF3I	CTNAG	3 cut(s)	31, 153, 466
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
LmnI	GCTCC	5 cut(s)	404, 435, 534, 598, 882
Lsp1109I	GCAGC	4 cut(s)	237, 495, 498, 549
LweI	GCATC	3 cut(s)	291, 498, 654
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	6 cut(s)	205, 235, 349, 460, 759, 935
MboI	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
MflI	RGATCY	2 cut(s)	203, 233
MhlI	GDGCHC	2 cut(s)	589, 887
MluCI	AATT	3 cut(s)	172, 624, 637
MlyI	GAGTC	3 cut(s)	434, 581, 761
MmeI	TCCRAC	2 cut(s)	641, 735
MseI	TTAA	2 cut(s)	317, 371
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	4 cut(s)	101, 129, 224, 254
MwoI	GCNNNNNNNGC	3 cut(s)	106, 154, 420
NdeII	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
NlaIII	CATG	1 cut(s)	391
NspI	RCATGY	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	846
PkrI	GCNGC	6 cut(s)	150, 222, 252, 485, 488, 539
PleI	GAGTC	3 cut(s)	434, 580, 760
PpsI	GAGTC	3 cut(s)	434, 580, 760
PshBI	ATTAAT	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	103, 126
PsuI	RGATCY	2 cut(s)	203, 233
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	317, 371
SatI	GCNGC	6 cut(s)	149, 221, 251, 484, 487, 538
Sau3AI	GATC	6 cut(s)	203, 233, 347, 458, 757, 933
Sau96I	GGNCC	2 cut(s)	103, 126
SchI	GAGTC	3 cut(s)	434, 581, 761
SduI	GDGCHC	2 cut(s)	589, 887
SetI	ASST	7 cut(s)	65, 111, 159, 359, 409, 531, 618
SfaNI	GCATC	3 cut(s)	291, 498, 654
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	2 cut(s)	103, 126
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	2 cut(s)	179, 503
SmoI	CTYRAG	2 cut(s)	179, 503
Sse9I	AATT	3 cut(s)	172, 624, 637
SsiI	CCGC	4 cut(s)	98, 146, 149, 221
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	336, 563
TaqI	TCGA	3 cut(s)	159, 165, 760
TasI	AATT	3 cut(s)	172, 624, 637
TauI	GCSGC	2 cut(s)	151, 223
TfiI	GAWTC	1 cut(s)	846
Tru1I	TTAA	2 cut(s)	317, 371
Tru9I	TTAA	2 cut(s)	317, 371
TscAI	CASTG	3 cut(s)	267, 341, 594
TseI	GCWGC	4 cut(s)	250, 483, 486, 537
TspRI	CASTG	3 cut(s)	267, 341, 594
VneI	GTGCAC	1 cut(s)	585
VpaK11BI	GGWCC	2 cut(s)	103, 126
VspI	ATTAAT	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	2 cut(s)	624, 637
XceI	RCATGY	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.