Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

43237891 .. 43239744

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGGAGACCGAACCGGAAACCCAGAGACCCCAAGAAACCCGAAAGAGGGGAGATTGGTCCTTGAAGGACTTTGAGATTGGAAAGCCGCTGGGCAAAGGCAAATTCGGGCGGGTCTACGTCGCCCGAGAAGTCAAGAGCCAATACGTCGTGGCATTGAAGGTGTTGTTCAAGAAGCAGATAAAGAAGTACAACATTCGCCACCAGCTGAAGAGAGAGATGGAGATTCAGACGAGTCTGAGGCACCCCAACATTCTTCGTCTCTATGGTTGGTTCCATGATGATGAGCGCATCGTCTTGATTCTTGAGTACGCCCATGGCGGTGAGCTTTATGGCCTTTTGATGGATTGTACCTACTTTACTGAGAAACGAGCCGCGACTTATATATTGAGCTTAGCGGAAGCTTTGGCCTATTGTCATGAGAAGGATGTGATTCATAGGGACATAAAGCCTGAAAACTTGTTGCTTGATCATGAGGGTCGATTGAAAATTGCAGACTTTGGATGGTCCGTACAGTCAAAGAATAAGAGACGCACCATGTGTGGAACTCTGGATTACTTAGCCCCAGAACTGGTGGAAAATAAAGCTCATGACTACGCAGTCGATAACTGGACTTTGGGCATTCTTTGCTATGAGTTTCTCTTTGGTGTTCCTCCCTTTGAGGCCAAAAGTCAAAAAGATACATTTCAAAGGATAGTGAAGGTTGACCTGAGCTTCCCTGCAACACCTCAAGTTTCTGCTGAAGCCAAAGACCTCATTACCAAGCTTCTCGTGAAGGACACCTCAAAGAGGCTCTCTCTTCAGAAAATCATGGAACACCCATGGATAGTTAAGAGTGCAGATCCCACTGCTATCTGCAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

288

Amino Acids

33.51

Weight (kDa)

8.76

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 276	1.1e-76	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	26 - 272	1.3e-42	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	122 - 221	2.8e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	377
AciI	CCGC	5 cut(s)	89, 112, 321, 375, 398
AclWI	GGATC	1 cut(s)	836
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	3 cut(s)	230, 762, 785
AdeI	CACNNNGTG	1 cut(s)	540
AfaI	GTAC	4 cut(s)	191, 311, 352, 513
AfiI	CCNNNNNNNGG	5 cut(s)	48, 49, 343, 571, 789
AgsI	TTSAA	5 cut(s)	67, 160, 172, 487, 689
AluBI	AGCT	7 cut(s)	208, 328, 393, 404, 587, 714, 766
AluI	AGCT	7 cut(s)	208, 328, 393, 404, 587, 714, 766
Alw26I	GTCTC	4 cut(s)	2, 22, 266, 523
AlwI	GGATC	1 cut(s)	836
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	3 cut(s)	334, 408, 663
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	60, 507
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	60, 507
BanI	GGYRCC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	770
BccI	CCATC	3 cut(s)	214, 337, 498
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	4 cut(s)	2, 22, 266, 523
BfaI	CTAG	1 cut(s)	865
BisI	GCNGC	2 cut(s)	89, 375
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	2 cut(s)	90, 376
Bme18I	GGWCC	2 cut(s)	60, 507
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	60, 507
BmiI	GGNNCC	2 cut(s)	245, 275
BmsI	GCATC	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu10I	CCTNAGC	1 cut(s)	710
Bpu1102I	GCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	2 cut(s)	326, 714
BsaI	GGTCTC	2 cut(s)	2, 22
BsaJI	CCNNGG	2 cut(s)	316, 821
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 49, 343, 571, 789
Bse1I	ACTGG	2 cut(s)	576, 614
BseDI	CCNNGG	2 cut(s)	316, 821
BseGI	GGATG	2 cut(s)	433, 509
BseLI	CCNNNNNNNGG	5 cut(s)	48, 49, 343, 571, 789
BseMII	CTCAG	3 cut(s)	230, 354, 701
BseNI	ACTGG	2 cut(s)	576, 614
BseRI	GAGGAG	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	858
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	336, 410, 665
BshNI	GGYRCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	5 cut(s)	48, 49, 343, 571, 789
BsmAI	GTCTC	4 cut(s)	2, 22, 266, 523
BsmBI	CGTCTC	2 cut(s)	266, 523
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	3 cut(s)	336, 410, 665
Bso31I	GGTCTC	2 cut(s)	2, 22
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	469, 841
Bsp1720I	GCTNAGC	1 cut(s)	394
Bsp19I	CCATGG	2 cut(s)	316, 821
BspACI	CCGC	5 cut(s)	89, 112, 321, 375, 398
BspANI	GGCC	3 cut(s)	336, 410, 665
BspCNI	CTCAG	3 cut(s)	231, 355, 702
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	3 cut(s)	418, 472, 589
BspLI	GGNNCC	2 cut(s)	245, 275
BspPI	GGATC	1 cut(s)	836
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	2 cut(s)	2, 22
BsrI	ACTGG	2 cut(s)	576, 614
BssECI	CCNNGG	2 cut(s)	316, 821
BssMI	GATC	2 cut(s)	469, 841
BssSI	CACGAG	1 cut(s)	770
BssT1I	CCWWGG	2 cut(s)	316, 821
Bst2BI	CACGAG	1 cut(s)	770
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	2 cut(s)	206, 804
BstAPI	GCANNNNNTGC	1 cut(s)	627
BstDEI	CTNAG	5 cut(s)	239, 363, 394, 559, 710
BstDSI	CCRYGG	2 cut(s)	316, 821
BstENI	CCTNNNNNAGG	1 cut(s)	787
BstF5I	GGATG	2 cut(s)	433, 509
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	472, 844
BstMAI	GTCTC	4 cut(s)	2, 22, 266, 523
BstMBI	GATC	2 cut(s)	469, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstUI	CGCG	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BsuRI	GGCC	3 cut(s)	336, 410, 665
BtgI	CCRYGG	2 cut(s)	316, 821
BtsCI	GGATG	2 cut(s)	433, 509
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	1 cut(s)	846
CciI	TCATGA	3 cut(s)	418, 472, 589
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	60, 507
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	4 cut(s)	190, 310, 351, 512
CviAII	CATG	8 cut(s)	278, 317, 419, 473, 538, 590, 811, 822
CviQI	GTAC	4 cut(s)	190, 310, 351, 512
DdeI	CTNAG	5 cut(s)	239, 363, 394, 559, 710
DpnI	GATC	2 cut(s)	471, 843
DpnII	GATC	2 cut(s)	469, 841
DraIII	CACNNNGTG	1 cut(s)	540
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	2 cut(s)	206, 804
EarI	CTCTTC	2 cut(s)	206, 804
Eco130I	CCWWGG	2 cut(s)	316, 821
Eco31I	GGTCTC	2 cut(s)	2, 22
Eco47I	GGWCC	2 cut(s)	60, 507
Eco57I	CTGAAG	3 cut(s)	230, 762, 785
Eco88I	CYCGRG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	787
EcoT14I	CCWWGG	2 cut(s)	316, 821
ErhI	CCWWGG	2 cut(s)	316, 821
Esp3I	CGTCTC	2 cut(s)	266, 523
FaeI	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	8 cut(s)	277, 316, 418, 472, 537, 589, 810, 821
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	89, 375
FokI	GGATG	2 cut(s)	440, 516
Fsp4HI	GCNGC	2 cut(s)	89, 375
FspBI	CTAG	1 cut(s)	865
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	89, 375
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	3 cut(s)	336, 410, 665
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	540
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	2 cut(s)	402, 764
HinfI	GANTC	4 cut(s)	226, 235, 301, 433
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	118, 706
Hpy188I	TCNGA	3 cut(s)	231, 240, 804
Hpy188III	TCNNGA	9 cut(s)	136, 172, 298, 305, 419, 473, 551, 590, 772
Hpy8I	GTNNAC	2 cut(s)	118, 706
Hpy99I	CGWCG	2 cut(s)	125, 152
HpyAV	CCTTC	5 cut(s)	61, 154, 418, 694, 769
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4IV	ACGT	2 cut(s)	120, 147
HpyCH4V	TGCA	4 cut(s)	494, 722, 839, 858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	5 cut(s)	239, 363, 394, 559, 710
HpySE526I	ACGT	2 cut(s)	120, 147
Hsp92II	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	469, 841
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	865
MaeII	ACGT	2 cut(s)	120, 147
MalI	GATC	2 cut(s)	471, 843
MboI	GATC	2 cut(s)	469, 841
MboII	GAAGA	3 cut(s)	223, 248, 791
MflI	RGATCY	1 cut(s)	841
MluCI	AATT	3 cut(s)	104, 489, 859
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	42, 234, 469, 655, 663, 738, 764, 783, 793
MseI	TTAA	1 cut(s)	831
MslI	CAYNNNNRTG	2 cut(s)	282, 321
MspA1I	CMGCKG	2 cut(s)	91, 208
MspI	CCGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	621
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	627
NcoI	CCATGG	2 cut(s)	316, 821
NdeII	GATC	2 cut(s)	469, 841
NlaIII	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
NlaIV	GGNNCC	2 cut(s)	245, 275
PagI	TCATGA	3 cut(s)	418, 472, 589
PctI	GAATGC	1 cut(s)	621
PfeI	GAWTC	3 cut(s)	226, 301, 433
PkrI	GCNGC	2 cut(s)	90, 376
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	245, 275
PspPI	GGNCC	2 cut(s)	60, 507
PsuI	RGATCY	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	4 cut(s)	191, 311, 352, 513
RsaNI	GTAC	4 cut(s)	190, 310, 351, 512
RseI	CAYNNNNRTG	2 cut(s)	282, 321
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	2 cut(s)	89, 375
Sau3AI	GATC	2 cut(s)	469, 841
Sau96I	GGNCC	2 cut(s)	60, 507
SchI	GAGTC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	300
SinI	GGWCC	2 cut(s)	60, 507
SmiMI	CAYNNNNRTG	2 cut(s)	282, 321
SmlI	CTYRAG	2 cut(s)	305, 729
SmoI	CTYRAG	2 cut(s)	305, 729
Sse9I	AATT	3 cut(s)	104, 489, 859
SsiI	CCGC	5 cut(s)	89, 112, 321, 375, 398
SspMI	CTAG	1 cut(s)	865
StyI	CCWWGG	2 cut(s)	316, 821
TaaI	ACNGT	1 cut(s)	516
TaiI	ACGT	2 cut(s)	123, 150
TaqI	TCGA	2 cut(s)	481, 603
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	104, 489, 859
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	2 cut(s)	91, 377
TfiI	GAWTC	3 cut(s)	226, 301, 433
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	1 cut(s)	853
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	853
VpaK11BI	GGWCC	2 cut(s)	60, 507
XagI	CCTNNNNNAGG	1 cut(s)	787
XapI	RAATTY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.