Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

43179443 .. 43181473

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAGATTCAGACGAGTCTGAGGCACCCCAACATTCTTCCTCTCTATGGTTGGTTCCATGATGATGACCGCATCGTCTTGATTCTTGAGTACGCCTATGGCGGTGAGCTTTATGGCCTTTTGAGGGATTGTACCTACTTCACTGAGAAACGAGCAGCGACTGGTCGATTGAAAATTGCAGACTTTGGATGGTCTGTGCAGTCAAAGAATAAGAGACGCACCATGTGTGGAACTCTGGATTACTTAGCCCCAGAACTGGTGGAGAGTAAAGCTCATGACTACACAGTCGATAACTGGACTTTGGGCATTCTTTGCTATGAGTTTCTCTTTGGCGTTCCTCCCTTTGAGGCTGAAAGTCAAAAAGATACATTTCAAAGGATAGTGAAGGTTGACCTGAGCTTCCCTGCAACACCTCAAGTTTCTGCTGAAGCCAAAGACCTCATTACCAAGCTTCTCGTGAAGGACATCTCAAAGAGGCTCTCTCTTCAGAAGATCATGGAACACCCATGGATAGTTAAGAATGCAGATCCTACTGGTATCTGCAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

183

Amino Acids

20.99

Weight (kDa)

6.09

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 52	8.5e-07	Protein kinase domain
Pkinase	PF00069	54 - 171	2.9e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 167	1.2e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	74, 284
AccB1I	GGYRCC	1 cut(s)	24
AciI	CCGC	2 cut(s)	70, 102
AclWI	GGATC	1 cut(s)	521
AcuI	CTGAAG	2 cut(s)	447, 470
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	92, 133
AfiI	CCNNNNNNNGG	3 cut(s)	47, 124, 256
AgsI	TTSAA	2 cut(s)	172, 374
AluBI	AGCT	4 cut(s)	109, 272, 399, 451
AluI	AGCT	4 cut(s)	109, 272, 399, 451
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	550
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	26, 56
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	4 cut(s)	256, 288, 466, 498
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	107, 399
BsaJI	CCNNGG	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 124, 256
Bse1I	ACTGG	4 cut(s)	166, 261, 299, 538
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	47, 124, 256
BseMII	CTCAG	3 cut(s)	11, 135, 386
BseNI	ACTGG	4 cut(s)	166, 261, 299, 538
BseXI	GCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	47, 124, 256
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmI	GAATGC	2 cut(s)	306, 526
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	492, 526
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	2 cut(s)	70, 102
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	3 cut(s)	12, 136, 387
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	26, 56
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	24
BsrI	ACTGG	4 cut(s)	166, 261, 299, 538
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	2 cut(s)	492, 526
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	489
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	20, 144, 244, 395
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	2 cut(s)	495, 529
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	492, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	161
CciI	TCATGA	1 cut(s)	274
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	91, 132
CviAII	CATG	5 cut(s)	59, 223, 275, 496, 507
CviJI	RGCY	9 cut(s)	109, 117, 248, 272, 350, 399, 431, 451, 478
CviKI_1	RGCY	9 cut(s)	109, 117, 248, 272, 350, 399, 431, 451, 478
CviQI	GTAC	2 cut(s)	91, 132
DdeI	CTNAG	4 cut(s)	20, 144, 244, 395
DpnI	GATC	2 cut(s)	494, 528
DpnII	GATC	2 cut(s)	492, 526
DraIII	CACNNNGTG	1 cut(s)	225
DrdI	GACNNNNNNGTC	2 cut(s)	74, 284
DseDI	GACNNNNNNGTC	2 cut(s)	74, 284
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	506
Eco57I	CTGAAG	2 cut(s)	447, 470
EcoT14I	CCWWGG	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	506
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	5 cut(s)	62, 226, 278, 499, 510
FaiI	YATR	9 cut(s)	48, 60, 99, 114, 224, 276, 318, 497, 508
FatI	CATG	5 cut(s)	58, 222, 274, 495, 506
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	550
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	117
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	62, 226, 278, 499, 510
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	7, 16, 82
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	12, 21, 489
Hpy188III	TCNNGA	5 cut(s)	79, 86, 236, 275, 457
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	379, 454
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	5 cut(s)	179, 199, 407, 524, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	4 cut(s)	20, 144, 244, 395
Hsp92II	CATG	5 cut(s)	62, 226, 278, 499, 510
Kzo9I	GATC	2 cut(s)	492, 526
LpnPI	CCDG	8 cut(s)	147, 221, 242, 264, 280, 407, 417, 519
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	550
MalI	GATC	2 cut(s)	494, 528
MboI	GATC	2 cut(s)	492, 526
MboII	GAAGA	3 cut(s)	29, 476, 502
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	8 cut(s)	15, 51, 117, 340, 348, 423, 449, 468
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	63
Mva1269I	GAATGC	2 cut(s)	306, 526
MwoI	GCNNNNNNNGC	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	506
NdeII	GATC	2 cut(s)	492, 526
NlaIII	CATG	5 cut(s)	62, 226, 278, 499, 510
NlaIV	GGNNCC	2 cut(s)	26, 56
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	2 cut(s)	306, 526
PfeI	GAWTC	2 cut(s)	7, 82
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	26, 56
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	2 cut(s)	92, 133
RsaNI	GTAC	2 cut(s)	91, 132
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	492, 526
SchI	GAGTC	1 cut(s)	25
SetI	ASST	9 cut(s)	111, 137, 274, 390, 396, 401, 415, 441, 453
SfaNI	GCATC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	86, 414
SmoI	CTYRAG	2 cut(s)	86, 414
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	70, 102
SspMI	CTAG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	166, 288
TasI	AATT	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	7, 82
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	155
TspRI	CASTG	1 cut(s)	148
XspI	CTAG	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.