Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

7303463 .. 7306608

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCGACGAAATCCGATTCCGCAAAGAGGGAGTGGTCCCTGAACGACTTCGAGATCGGAAAGCCTCTCGGCAAAGGCAAATTCGGGCGGGTCTACGTGGCCCGGGAAGTCAAGAGCAAGTACGTGGTGGCGTTGAAGGTGTTGTTCAAGAAGCAGATAAAGAAGTACAAGATTCACCACCAGCTGAAGAGAGAGATGGAGATCCAGACCAGTCTCAGACACCCCAACATTCTTCGCCTCTACGGTTGGTTCCACGACGACGAACGCATCGTCTTGATACTCGAGTACGCCCACGGCGGCGAGCTGTATGGGCTGCTCAGGGAGAATACTCACCTCTCTGAGAAACAGACCGCCACGTATATACTGAGCCTGGCGCAGGCTTTGGCTTATTGTCACGAGAAGCATGTGATTCATAGGGATATCAAGCCGGAAAATTTGTTGCTTGATCATGAGGGTCGACTGAAAATTGCAGACTTTGGATGGTCTGTACAGTCAAACAGCAAGAGACGAACAATGTGTGGAACGTTAGATTATTTAGCACCAGAGATGGTGGAGAACAGAGCTCATGATTATGCAGTGGATAACTGGACTTTGGGAATTCTCTGCTATGAGTTTCTTTATGGCACTCCTCCATTTGAGGCTGAAAGTCAAAGAGATACGTTCAAAAGGATTACTAACATTGACCTGAGCTTTCCTTCTAGCCCTCAAGTTTCTGCAGAAGCTAAACATCTCATTAGCCAGCTTCTGGTGAAGGACTCCTCTAGAGGCTTTCTCTTCAGAAGATCATGGAACACCCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

267

Amino Acids

31.01

Weight (kDa)

9.24

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 254	1.2e-70	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 252	8.8e-43	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	89 - 172	9.8e-06	ABC1 atypical kinase-like domain
Kinase-like	PF14531	108 - 211	6.6e-07	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	745
AccI	GTMKAC	2 cut(s)	93, 457
AciI	CCGC	4 cut(s)	21, 88, 297, 351
AclI	AACGTT	1 cut(s)	524
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	3 cut(s)	80, 433, 597
AcuI	CTGAAG	2 cut(s)	206, 760
AfaI	GTAC	4 cut(s)	122, 167, 287, 489
AfiI	CCNNNNNNNGG	3 cut(s)	27, 376, 745
AgsI	TTSAA	3 cut(s)	136, 148, 664
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	6 cut(s)	184, 304, 563, 690, 722, 742
AluI	AGCT	6 cut(s)	184, 304, 563, 690, 722, 742
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	218, 499
AlwI	GGATC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	2 cut(s)	102, 281
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	3 cut(s)	80, 433, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	36, 100
AsuC2I	CCSGG	2 cut(s)	103, 104
AsuHPI	GGTGA	3 cut(s)	167, 323, 760
AvaI	CYCGRG	2 cut(s)	102, 281
AvaII	GGWCC	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BanII	GRGCYC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	3 cut(s)	190, 474, 541
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	2 cut(s)	103, 104
BcoDI	GTCTC	2 cut(s)	218, 499
BfaI	CTAG	2 cut(s)	699, 762
BfmI	CTRYAG	1 cut(s)	714
BisI	GCNGC	2 cut(s)	298, 314
BlsI	GCNGC	2 cut(s)	299, 315
Bme1390I	CCNGG	3 cut(s)	103, 104, 371
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	2 cut(s)	102, 281
BmgT120I	GGNCC	2 cut(s)	36, 100
BmiI	GGNNCC	2 cut(s)	38, 251
BmrFI	CCNGG	3 cut(s)	103, 104, 371
BmsI	GCATC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	756, 788
Bpu10I	CCTNAGC	2 cut(s)	317, 686
BpuEI	CTTGAG	1 cut(s)	690
BpuMI	CCSGG	2 cut(s)	103, 104
BsaAI	YACGTR	3 cut(s)	97, 124, 357
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	102, 292, 796
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 376, 745
Bse1I	ACTGG	2 cut(s)	210, 590
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	102, 292, 796
BseGI	GGATG	1 cut(s)	485
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	27, 376, 745
BseMII	CTCAG	5 cut(s)	229, 330, 331, 356, 677
BseNI	ACTGG	2 cut(s)	210, 590
BseRI	GAGGAG	2 cut(s)	618, 748
BseXI	GCAGC	1 cut(s)	300
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	565
BsiHKCI	CYCGRG	2 cut(s)	102, 281
BsiSI	CCGG	2 cut(s)	103, 428
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	3 cut(s)	27, 376, 745
BsmAI	GTCTC	2 cut(s)	218, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	102, 281
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	54, 201, 445, 782
BspACI	CCGC	4 cut(s)	21, 88, 297, 351
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	5 cut(s)	228, 330, 331, 357, 678
BspHI	TCATGA	2 cut(s)	448, 565
BspLI	GGNNCC	2 cut(s)	38, 251
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	210, 590
BssECI	CCNNGG	3 cut(s)	102, 292, 796
BssMI	GATC	4 cut(s)	54, 201, 445, 782
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	796
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	245, 492
Bst6I	CTCTTC	2 cut(s)	182, 779
BstAUI	TGTACA	1 cut(s)	487
BstBAI	YACGTR	3 cut(s)	97, 124, 357
BstC8I	GCNNGC	3 cut(s)	302, 378, 740
BstDEI	CTNAG	5 cut(s)	215, 317, 339, 365, 686
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	4 cut(s)	57, 204, 448, 785
BstMAI	GTCTC	2 cut(s)	218, 499
BstMBI	GATC	4 cut(s)	54, 201, 445, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	3 cut(s)	101, 102, 369
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	3 cut(s)	302, 378, 740
CaiI	CAGNNNCTG	1 cut(s)	745
CciI	TCATGA	2 cut(s)	448, 565
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	36, 100
Cfr9I	CCCGGG	1 cut(s)	102
Csp6I	GTAC	4 cut(s)	121, 166, 286, 488
CviAII	CATG	4 cut(s)	404, 449, 566, 786
CviQI	GTAC	4 cut(s)	121, 166, 286, 488
DdeI	CTNAG	5 cut(s)	215, 317, 339, 365, 686
DpnI	GATC	4 cut(s)	56, 203, 447, 784
DpnII	GATC	4 cut(s)	54, 201, 445, 782
Eam1104I	CTCTTC	2 cut(s)	182, 779
EarI	CTCTTC	2 cut(s)	182, 779
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	206, 760
Eco88I	CYCGRG	2 cut(s)	102, 281
EcoICRI	GAGCTC	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	796
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	796
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	4 cut(s)	407, 452, 569, 789
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	403, 448, 565, 785
FauI	CCCGC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	2 cut(s)	93, 457
Fnu4HI	GCNGC	2 cut(s)	298, 314
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	298, 314
FspBI	CTAG	2 cut(s)	699, 762
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	2 cut(s)	298, 314
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	103, 428
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	4 cut(s)	407, 452, 569, 789
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HinfI	GANTC	4 cut(s)	17, 172, 409, 755
HpaII	CCGG	2 cut(s)	103, 428
HphI	GGTGA	3 cut(s)	167, 323, 760
Hpy166II	GTNNAC	2 cut(s)	94, 458
Hpy188I	TCNGA	5 cut(s)	16, 59, 218, 340, 779
Hpy188III	TCNNGA	9 cut(s)	52, 112, 148, 205, 274, 395, 449, 566, 762
Hpy8I	GTNNAC	2 cut(s)	94, 458
Hpy99I	CGWCG	3 cut(s)	10, 260, 263
HpyAV	CCTTC	3 cut(s)	130, 705, 745
HpyCH4III	ACNGT	2 cut(s)	245, 492
HpyCH4IV	ACGT	5 cut(s)	96, 123, 356, 524, 659
HpyCH4V	TGCA	3 cut(s)	470, 575, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	5 cut(s)	215, 317, 339, 365, 686
HpySE526I	ACGT	5 cut(s)	96, 123, 356, 524, 659
Hsp92II	CATG	4 cut(s)	407, 452, 569, 789
HspAI	GCGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	54, 201, 445, 782
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	699, 762
MaeII	ACGT	5 cut(s)	96, 123, 356, 524, 659
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	4 cut(s)	56, 203, 447, 784
MboI	GATC	4 cut(s)	54, 201, 445, 782
MboII	GAAGA	4 cut(s)	199, 224, 766, 792
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	4 cut(s)	80, 433, 465, 597
MlyI	GAGTC	1 cut(s)	749
MroXI	GAANNNNTTC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	2 cut(s)	103, 428
MspR9I	CCNGG	3 cut(s)	103, 104, 371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	2 cut(s)	103, 104
NdeII	GATC	4 cut(s)	54, 201, 445, 782
NlaIII	CATG	4 cut(s)	407, 452, 569, 789
NlaIV	GGNNCC	2 cut(s)	38, 251
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	2 cut(s)	448, 565
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	17, 172, 409
PflMI	CCANNNNNTGG	1 cut(s)	745
PkrI	GCNGC	2 cut(s)	299, 315
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
Ppu21I	YACGTR	3 cut(s)	97, 124, 357
Psp124BI	GAGCTC	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	38, 251
PspPI	GGNCC	2 cut(s)	36, 100
PspXI	VCTCGAGB	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	4 cut(s)	122, 167, 287, 489
RsaNI	GTAC	4 cut(s)	121, 166, 286, 488
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	565
SalI	GTCGAC	1 cut(s)	456
SatI	GCNGC	2 cut(s)	298, 314
Sau3AI	GATC	4 cut(s)	54, 201, 445, 782
Sau96I	GGNCC	2 cut(s)	36, 100
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	3 cut(s)	103, 104, 371
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	714
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	281
SmaI	CCCGGG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	281, 705
SmoI	CTYRAG	2 cut(s)	281, 705
Sse9I	AATT	4 cut(s)	80, 433, 465, 597
SsiI	CCGC	4 cut(s)	21, 88, 297, 351
SspMI	CTAG	2 cut(s)	699, 762
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	101, 102, 369
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	2 cut(s)	245, 492
TaiI	ACGT	5 cut(s)	99, 126, 359, 527, 662
TaqI	TCGA	3 cut(s)	51, 282, 457
TasI	AATT	4 cut(s)	80, 433, 465, 597
TatI	WGTACW	2 cut(s)	165, 487
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	17, 172, 409
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	401
TspMI	CCCGGG	1 cut(s)	102
TspRI	CASTG	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	80, 433, 597
XbaI	TCTAGA	1 cut(s)	761
XceI	RCATGY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	281
XmaI	CCCGGG	1 cut(s)	102
XmiI	GTMKAC	2 cut(s)	93, 457
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	699, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.