Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

10505645 .. 10507768

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG053100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGACGAAATCCGATTCCCCAAAGAGGGAGTGGTCCCTGAACGACTTCGAGATCGGAAAGCCTCTCGGCAAAGGCAAATTCGGGCGGGTCTACGTGGCCCGAGAAGTCAAGAGCAAGTACGTGGTGGCGTTGAAGGTGTTGTTCAAGAAGCAGATAAAGAAGTACAAGATTCACCACCAGCTGAAGAGAGAGATGGAGATCCAGACCAGTCTCAGACACCCCAACATTCTTCGCCTCTACGGTTGGTTCCACGACGAAGAACGCATCGTCTTGATCCTCGAGTACGCCCACGGCGGCGAGCTCTATGGGCTGCTCAGGGAGAACGCTCACCTCTCTGAGAAACAGACCGCCACGTATATACTGAGCCTGGCGCAGGCTTTGGCTTATTGTCACGAGAAGCATGTGATTCATAGGGATATCAAGCCGGAAAATTTGTTGCTTGATCATGAGGGTCGACTGAAAATTGCAGACTTTGGATGGTCTGTACAGTCAAGCAGCAAGAGACGAACAATGTGTGGAACGTTAGATTATTTAGCACCAGAAATGGTGGAGAACAGAGCTCATGATTATGCAGTGGATAACTGGACTTTGGGAATTCTCTGCTATGAGTTTCTTTATGGCACTCCTCCATTTGAGGCTGAAAGTCAAAGAGATACTTTCAAAAGGTATGAAATGAATGTTTGTATGCTTCGGTTAAAGTGGTTCCTTGACATGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

240

Amino Acids

28.26

Weight (kDa)

8.99

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 227	6.3e-66	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 227	5.9e-42	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	89 - 171	4.8e-06	ABC1 atypical kinase-like domain
Kinase-like	PF14531	109 - 204	1.6e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	93, 457
AciI	CCGC	3 cut(s)	88, 297, 351
AclI	AACGTT	1 cut(s)	524
AclWI	GGATC	2 cut(s)	196, 271
AcsI	RAATTY	3 cut(s)	80, 433, 597
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	4 cut(s)	122, 167, 287, 489
AfiI	CCNNNNNNNGG	3 cut(s)	27, 28, 376
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	3 cut(s)	136, 148, 664
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	3 cut(s)	184, 304, 563
AluI	AGCT	3 cut(s)	184, 304, 563
Alw21I	GWGCWC	2 cut(s)	306, 565
Alw26I	GTCTC	2 cut(s)	218, 499
AlwI	GGATC	2 cut(s)	196, 271
Ama87I	CYCGRG	2 cut(s)	102, 281
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	313, 498
ApoI	RAATTY	3 cut(s)	80, 433, 597
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	36, 100
AsuHPI	GGTGA	2 cut(s)	167, 323
AvaI	CYCGRG	2 cut(s)	102, 281
AvaII	GGWCC	1 cut(s)	36
BanII	GRGCYC	2 cut(s)	306, 565
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	2 cut(s)	306, 565
BbvI	GCAGC	2 cut(s)	300, 510
BccI	CCATC	2 cut(s)	190, 474
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	218, 499
BisI	GCNGC	3 cut(s)	298, 314, 499
BlsI	GCNGC	3 cut(s)	299, 315, 500
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	2 cut(s)	102, 281
BmgT120I	GGNCC	2 cut(s)	36, 100
BmiI	GGNNCC	3 cut(s)	38, 251, 707
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	317
BsaAI	YACGTR	3 cut(s)	97, 124, 357
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 28, 376
Bse1I	ACTGG	2 cut(s)	210, 590
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	485
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	27, 28, 376
BseMII	CTCAG	4 cut(s)	229, 330, 331, 356
BseNI	ACTGG	2 cut(s)	210, 590
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	2 cut(s)	300, 510
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	306, 565
BsiHKCI	CYCGRG	2 cut(s)	102, 281
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	3 cut(s)	27, 28, 376
BsmAI	GTCTC	2 cut(s)	218, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	102, 281
Bsp1286I	GDGCHC	2 cut(s)	306, 565
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	54, 201, 276, 445
BspACI	CCGC	3 cut(s)	88, 297, 351
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	4 cut(s)	228, 330, 331, 357
BspHI	TCATGA	2 cut(s)	448, 565
BspLI	GGNNCC	3 cut(s)	38, 251, 707
BspPI	GGATC	2 cut(s)	196, 271
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	210, 590
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	4 cut(s)	54, 201, 276, 445
BssSI	CACGAG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	245, 492
Bst6I	CTCTTC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	487
BstBAI	YACGTR	3 cut(s)	97, 124, 357
BstC8I	GCNNGC	2 cut(s)	302, 378
BstDEI	CTNAG	4 cut(s)	215, 317, 339, 365
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	4 cut(s)	57, 204, 279, 448
BstMAI	GTCTC	2 cut(s)	218, 499
BstMBI	GATC	4 cut(s)	54, 201, 276, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	407, 718
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	300, 510
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	302, 378
CciI	TCATGA	2 cut(s)	448, 565
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	36, 100
Csp6I	GTAC	4 cut(s)	121, 166, 286, 488
CviAII	CATG	4 cut(s)	404, 449, 566, 715
CviQI	GTAC	4 cut(s)	121, 166, 286, 488
DdeI	CTNAG	4 cut(s)	215, 317, 339, 365
DpnI	GATC	4 cut(s)	56, 203, 278, 447
DpnII	GATC	4 cut(s)	54, 201, 276, 445
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	2 cut(s)	304, 563
Eco24I	GRGCYC	2 cut(s)	306, 565
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	2 cut(s)	304, 563
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	2 cut(s)	102, 281
EcoICRI	GAGCTC	2 cut(s)	304, 563
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	421
EcoT38I	GRGCYC	2 cut(s)	306, 565
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	4 cut(s)	407, 452, 569, 718
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	403, 448, 565, 714
FauI	CCCGC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	2 cut(s)	93, 457
Fnu4HI	GCNGC	3 cut(s)	298, 314, 499
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	2 cut(s)	306, 565
Fsp4HI	GCNGC	3 cut(s)	298, 314, 499
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	3 cut(s)	298, 314, 499
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	4 cut(s)	407, 452, 569, 718
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HinfI	GANTC	3 cut(s)	17, 172, 409
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	167, 323
Hpy166II	GTNNAC	2 cut(s)	94, 458
Hpy188I	TCNGA	4 cut(s)	16, 59, 218, 340
Hpy188III	TCNNGA	8 cut(s)	52, 112, 148, 205, 274, 395, 449, 566
Hpy8I	GTNNAC	2 cut(s)	94, 458
Hpy99I	CGWCG	2 cut(s)	10, 260
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	245, 492
HpyCH4IV	ACGT	4 cut(s)	96, 123, 356, 524
HpyCH4V	TGCA	2 cut(s)	470, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	4 cut(s)	215, 317, 339, 365
HpySE526I	ACGT	4 cut(s)	96, 123, 356, 524
Hsp92II	CATG	4 cut(s)	407, 452, 569, 718
HspAI	GCGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	54, 201, 276, 445
Lsp1109I	GCAGC	2 cut(s)	300, 510
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	4 cut(s)	96, 123, 356, 524
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	4 cut(s)	56, 203, 278, 447
MboI	GATC	4 cut(s)	54, 201, 276, 445
MboII	GAAGA	3 cut(s)	199, 224, 272
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	306, 565
MluCI	AATT	4 cut(s)	80, 433, 465, 597
MnlI	CCTC	8 cut(s)	21, 75, 248, 290, 344, 445, 631, 639
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	698, 721
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	4 cut(s)	54, 201, 276, 445
NlaIII	CATG	4 cut(s)	407, 452, 569, 718
NlaIV	GGNNCC	3 cut(s)	38, 251, 707
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	2 cut(s)	407, 718
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	2 cut(s)	448, 565
PciI	ACATGT	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	17, 172, 409
PkrI	GCNGC	3 cut(s)	299, 315, 500
Ppu21I	YACGTR	3 cut(s)	97, 124, 357
PscI	ACATGT	1 cut(s)	714
Psp124BI	GAGCTC	2 cut(s)	306, 565
Psp1406I	AACGTT	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	38, 251, 707
PspPI	GGNCC	2 cut(s)	36, 100
PspXI	VCTCGAGB	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	4 cut(s)	122, 167, 287, 489
RsaNI	GTAC	4 cut(s)	121, 166, 286, 488
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	2 cut(s)	306, 565
SalI	GTCGAC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	698, 721
SatI	GCNGC	3 cut(s)	298, 314, 499
Sau3AI	GATC	4 cut(s)	54, 201, 276, 445
Sau96I	GGNCC	2 cut(s)	36, 100
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	306, 565
SfaNI	GCATC	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	80, 433, 465, 597
SsiI	CCGC	3 cut(s)	88, 297, 351
SstI	GAGCTC	2 cut(s)	306, 565
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	245, 492
TaiI	ACGT	4 cut(s)	99, 126, 359, 527
TaqI	TCGA	3 cut(s)	51, 282, 457
TasI	AATT	4 cut(s)	80, 433, 465, 597
TatI	WGTACW	2 cut(s)	165, 487
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	17, 172, 409
Tru1I	TTAA	2 cut(s)	698, 721
Tru9I	TTAA	2 cut(s)	698, 721
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	313, 498
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	401, 687, 692
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	80, 433, 597
XceI	RCATGY	2 cut(s)	407, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	281
XmiI	GTMKAC	2 cut(s)	93, 457
XmnI	GAANNNNTTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.