Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002665.1

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Forward (+)

77524 .. 78237

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002665.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atggcggagaccgaaccggaaacccagaaaccccaagaaacccgaaagaggggaaattggtccctgacggacttcgagatcggaaaaccgctgggcagaggcaaattcgggagggtctacgtcgcccgagaagtcaagagccaatacgtcgtggcattgaaggtgttgttcaagaagcagataaagaagtacaacattcgccaccagctgaagagagagatggagattcagacgagtctgaggcaccccaacattcttcgtctctatggttggttccatgatgatgagcgcatcgtcttgattcttgagtacgcccatggcggcgagctttatggccttttgagggattgtacctactttactgagaaacgagccgcgacttatatattgagcttagcggaagctttggcctattgtcatgagaaggatgtgattcatagggacataaagcctgaaaacttgttgcttgatcatgaggtatgtataagattggtcctattgaactatgctgttgatttgtttgaactctggattctgggttatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

182

Amino Acids

21.48

Weight (kDa)

8.66

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	377
AciI	CCGC	5 cut(s)	5, 89, 321, 375, 398
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	3 cut(s)	191, 311, 352
AfiI	CCNNNNNNNGG	3 cut(s)	48, 49, 343
AgsI	TTSAA	4 cut(s)	160, 172, 502, 524
AluBI	AGCT	4 cut(s)	208, 328, 393, 404
AluI	AGCT	4 cut(s)	208, 328, 393, 404
Alw26I	GTCTC	2 cut(s)	2, 266
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	334, 408
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	60, 493
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	60, 493
BanI	GGYRCC	1 cut(s)	243
BccI	CCATC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	2, 266
BisI	GCNGC	2 cut(s)	322, 375
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	2 cut(s)	323, 376
Bme18I	GGWCC	2 cut(s)	60, 493
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	60, 493
BmiI	GGNNCC	3 cut(s)	62, 245, 275
BmsI	GCATC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 49, 343
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	3 cut(s)	48, 49, 343
BseMII	CTCAG	2 cut(s)	230, 354
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	336, 410
BshNI	GGYRCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	2 cut(s)	46, 455
BslI	CCNNNNNNNGG	3 cut(s)	48, 49, 343
BsmAI	GTCTC	2 cut(s)	2, 266
BsmBI	CGTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	46, 455
BsnI	GGCC	2 cut(s)	336, 410
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	78, 469
Bsp1720I	GCTNAGC	1 cut(s)	394
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	5 cut(s)	5, 89, 321, 375, 398
BspANI	GGCC	2 cut(s)	336, 410
BspCNI	CTCAG	2 cut(s)	231, 355
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	2 cut(s)	418, 472
BspLI	GGNNCC	3 cut(s)	62, 245, 275
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	2
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	78, 469
BssT1I	CCWWGG	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	239, 363, 394
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	81, 472
BstMAI	GTCTC	2 cut(s)	2, 266
BstMBI	GATC	2 cut(s)	78, 469
BstUI	CGCG	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	336, 410
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	326
CciI	TCATGA	2 cut(s)	418, 472
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	60, 493
Csp6I	GTAC	3 cut(s)	190, 310, 351
CviAII	CATG	4 cut(s)	278, 317, 419, 473
CviJI	RGCY	9 cut(s)	141, 208, 328, 336, 374, 393, 404, 410, 451
CviKI_1	RGCY	9 cut(s)	141, 208, 328, 336, 374, 393, 404, 410, 451
CviQI	GTAC	3 cut(s)	190, 310, 351
DdeI	CTNAG	3 cut(s)	239, 363, 394
DpnI	GATC	2 cut(s)	80, 471
DpnII	GATC	2 cut(s)	78, 469
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	2 cut(s)	60, 493
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	4 cut(s)	281, 320, 422, 476
FaqI	GGGAC	2 cut(s)	46, 455
FatI	CATG	4 cut(s)	277, 316, 418, 472
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	322, 375
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	322, 375
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	322, 375
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	336, 410
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	281, 320, 422, 476
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	5 cut(s)	226, 235, 301, 433, 532
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	83, 231, 240
Hpy188III	TCNNGA	9 cut(s)	76, 109, 136, 172, 298, 305, 419, 473, 529
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	125, 152
HpyAV	CCTTC	2 cut(s)	154, 418
HpyCH4IV	ACGT	2 cut(s)	120, 147
HpyF3I	CTNAG	3 cut(s)	239, 363, 394
HpySE526I	ACGT	2 cut(s)	120, 147
Hsp92II	CATG	4 cut(s)	281, 320, 422, 476
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	78, 469
LpnPI	CCDG	8 cut(s)	30, 38, 77, 77, 218, 465, 514, 521
LweI	GCATC	1 cut(s)	300
MaeII	ACGT	2 cut(s)	120, 147
MalI	GATC	2 cut(s)	80, 471
MboI	GATC	2 cut(s)	78, 469
MboII	GAAGA	2 cut(s)	223, 248
MluCI	AATT	2 cut(s)	55, 104
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	42, 92, 105, 234, 336, 469
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	91, 208
MspI	CCGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	78, 469
NlaIII	CATG	4 cut(s)	281, 320, 422, 476
NlaIV	GGNNCC	3 cut(s)	62, 245, 275
PagI	TCATGA	2 cut(s)	418, 472
PfeI	GAWTC	4 cut(s)	226, 301, 433, 532
PkrI	GCNGC	2 cut(s)	323, 376
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	62, 245, 275
PspPI	GGNCC	2 cut(s)	60, 493
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	3 cut(s)	191, 311, 352
RsaNI	GTAC	3 cut(s)	190, 310, 351
RseI	CAYNNNNRTG	1 cut(s)	282
SatI	GCNGC	2 cut(s)	322, 375
Sau3AI	GATC	2 cut(s)	78, 469
Sau96I	GGNCC	2 cut(s)	60, 493
SchI	GAGTC	1 cut(s)	244
SetI	ASST	9 cut(s)	123, 150, 165, 210, 330, 356, 395, 406, 480
SfaNI	GCATC	1 cut(s)	300
SinI	GGWCC	2 cut(s)	60, 493
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	55, 104
SsiI	CCGC	5 cut(s)	5, 89, 321, 375, 398
StyI	CCWWGG	1 cut(s)	316
TaiI	ACGT	2 cut(s)	123, 150
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	55, 104
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	2 cut(s)	324, 377
TfiI	GAWTC	4 cut(s)	226, 301, 433, 532
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	60, 493
XapI	RAATTY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.