Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

30747127 .. 30748448

Gene Structure 1322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGACATTTCACTACCCACCAAGAGAAAAACTCATCATCTCTCCTCTGAAACCTAAGCAATCTTGTGGTTCTTGTTACCCCCAAACCCTAGAAAAATACCCTTTTCTCGATCACCCTTTTTTCTTGAGAAAAAATCTAACCATGTTCGATTACCAGAGTTTCCTAAAAGTTCATCATCCTGGTTGTGTAGGGAAAATGAGACCCTTCACTGACGGGGGAAAGCTATGGACTCGAAGTAGGCAATCTTGTTCGGTGTGTGGTACAAGAACCCCAGTAAAGATTTCTTGCTTTTGTTGTGCAAAAGTGTTATGTGGAAAGTGCCGTGTTAGTAGTGCTTCTGAGTTTGCGGTGGTTATAGGAAATAAAAGAGGCATTTGCAAGAGCTGTTTAGATCTTGTTCTGCTTGAAGATCAAGAAAGCTCATCGGAATATGAAAGCGAAAGGGATGATGATTCGGAAGAAATCACTTCGGAAGTTGAGGACAGGATGAGCTCATCCAAAGTGCCTATCAATCTTCCTAGCAATATCCGGAATAAGAGTTGTTTTGCATCTTTGGTTGCTGATAATATCAAGCTTGTCTACTTGAAGAAGAGCTTGGTGGAGGACTTAATGAAGCAGCAGCCTGATTGTTGGGAAAGAAAAGCAGTTGGAAGTTTTGTGAGAGTCAAAACTGACCCAAGAGACTATTATAGGGCAAATTATCACCAACTTGCAGAAGTTCAAGGCATAATTAAGAAGAGCTCAAACAGTGAATATTTCTTGCAAGTGTTATCCAATTATGTGACAAGAGATATTCCAGTTTCTCAGCTTTCGGATTGTGACTTCACCGAGGAGGAATGTGGGGATTTGCAACAAGATGTGGCAAACTGTCACTTGCTAAGAAGACCTACTGTTTTTGAGTTTGAACACAAGGCAAGAGTGCTGCATGAAGATATAACCAAGCATTGGATTAGGAGTGAGTTGGTGAGGTTGCAGAACTGTGTTGATTGGGCAAATGAGAAGGGACGGAGATGCGAGTTATTTGTGTACTTGGACCAAAGAGAATTGCTAAAGCAAGCATGTGAACAAGAGCGACTCTTAAAGCAGGTACCGGAGGTCATTGCAGATTTGCAGATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

373

Amino Acids

43.11

Weight (kDa)

7.43

Isoelectric Point (pI)

63.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	189 - 287	2.9e-11	Plus-3 domain
NERD_plant	PF25980	310 - 359	4.5e-21	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1120
Acc36I	ACCTGC	1 cut(s)	1075
Acc65I	GGTACC	1 cut(s)	1087
AccB1I	GGYRCC	1 cut(s)	1087
AccB7I	CCANNNNNTGG	1 cut(s)	945
AccI	GTMKAC	1 cut(s)	579
AccIII	TCCGGA	1 cut(s)	528
AciI	CCGC	1 cut(s)	347
AfaI	GTAC	3 cut(s)	262, 1028, 1089
AfiI	CCNNNNNNNGG	1 cut(s)	945
AgsI	TTSAA	4 cut(s)	407, 586, 722, 905
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	8 cut(s)	223, 384, 420, 492, 574, 594, 741, 808
AluI	AGCT	8 cut(s)	223, 384, 420, 492, 574, 594, 741, 808
Alw21I	GWGCWC	2 cut(s)	494, 743
Alw26I	GTCTC	2 cut(s)	193, 675
Aor13HI	TCCGGA	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	616, 619, 922
Asp718I	GGTACC	1 cut(s)	1087
AspS9I	GGNCC	1 cut(s)	1033
AsuHPI	GGTGA	4 cut(s)	104, 695, 817, 976
AvaII	GGWCC	1 cut(s)	1033
BanI	GGYRCC	1 cut(s)	1087
BanII	GRGCYC	2 cut(s)	494, 743
BbsI	GAAGAC	1 cut(s)	889
Bbv12I	GWGCWC	2 cut(s)	494, 743
BbvI	GCAGC	3 cut(s)	628, 631, 909
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	193, 675
BfaI	CTAG	2 cut(s)	89, 519
BfuAI	ACCTGC	1 cut(s)	1075
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	3 cut(s)	617, 620, 923
BlsI	GCNGC	3 cut(s)	618, 621, 924
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	1033
BmgT120I	GGNCC	1 cut(s)	1033
BmiI	GGNNCC	1 cut(s)	1089
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	557, 1001
BmuI	ACTGGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	889
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	828
BsaWI	WCCGGW	2 cut(s)	528, 1090
Bsc4I	CCNNNNNNNGG	1 cut(s)	945
Bse1I	ACTGG	2 cut(s)	272, 797
Bse3DI	GCAATG	1 cut(s)	1098
BseAI	TCCGGA	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	4 cut(s)	175, 451, 492, 494
BseLI	CCNNNNNNNGG	1 cut(s)	945
BseMI	GCAATG	1 cut(s)	1098
BseMII	CTCAG	2 cut(s)	330, 818
BseNI	ACTGG	2 cut(s)	272, 797
BseRI	GAGGAG	2 cut(s)	33, 845
BseXI	GCAGC	3 cut(s)	628, 631, 909
BshNI	GGYRCC	1 cut(s)	1087
BsiHKAI	GWGCWC	2 cut(s)	494, 743
BsiSI	CCGG	2 cut(s)	529, 1091
BslFI	GGGAC	1 cut(s)	1017
BslI	CCNNNNNNNGG	1 cut(s)	945
BsmAI	GTCTC	2 cut(s)	193, 675
BsmFI	GGGAC	1 cut(s)	1017
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	494, 743
Bsp13I	TCCGGA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	109, 391, 409
BspACI	CCGC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	331, 817
BspEI	TCCGGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	1089
BspMI	ACCTGC	1 cut(s)	1075
BspQI	GCTCTTC	2 cut(s)	584, 731
BspT107I	GGYRCC	1 cut(s)	1087
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	1098
BsrI	ACTGG	2 cut(s)	272, 797
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	3 cut(s)	109, 391, 409
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	749, 869, 892, 980
Bst6I	CTCTTC	2 cut(s)	584, 731
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	4 cut(s)	54, 339, 804, 878
BstF5I	GGATG	4 cut(s)	175, 451, 492, 494
BstKTI	GATC	3 cut(s)	112, 394, 412
BstMAI	GTCTC	2 cut(s)	193, 675
BstMBI	GATC	3 cut(s)	109, 391, 409
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	1062
BstSCI	CCNGG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	628, 631, 909
BstV2I	GAAGAC	1 cut(s)	889
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BtsCI	GGATG	4 cut(s)	175, 451, 492, 494
BtsIMutI	CAGTG	2 cut(s)	207, 754
BveI	ACCTGC	1 cut(s)	1075
Cac8I	GCNNGC	1 cut(s)	1056
Cfr13I	GGNCC	1 cut(s)	1033
Csp6I	GTAC	3 cut(s)	261, 1027, 1088
CviAII	CATG	3 cut(s)	142, 926, 1059
CviJI	RGCY	9 cut(s)	223, 384, 420, 492, 574, 594, 622, 741, 808
CviKI_1	RGCY	9 cut(s)	223, 384, 420, 492, 574, 594, 622, 741, 808
CviQI	GTAC	3 cut(s)	261, 1027, 1088
DdeI	CTNAG	4 cut(s)	54, 339, 804, 878
DpnI	GATC	3 cut(s)	111, 393, 411
DpnII	GATC	3 cut(s)	109, 391, 409
Eam1104I	CTCTTC	2 cut(s)	584, 731
EarI	CTCTTC	2 cut(s)	584, 731
Ecl136II	GAGCTC	2 cut(s)	492, 741
Eco24I	GRGCYC	2 cut(s)	494, 743
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	1033
Eco53kI	GAGCTC	2 cut(s)	492, 741
EcoICRI	GAGCTC	2 cut(s)	492, 741
EcoRII	CCWGG	1 cut(s)	178
EcoT38I	GRGCYC	2 cut(s)	494, 743
FaeI	CATG	3 cut(s)	145, 929, 1062
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	1 cut(s)	1017
FatI	CATG	3 cut(s)	141, 925, 1058
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	3 cut(s)	617, 620, 923
FokI	GGATG	4 cut(s)	162, 458, 481, 499
FriOI	GRGCYC	2 cut(s)	494, 743
Fsp4HI	GCNGC	3 cut(s)	617, 620, 923
FspBI	CTAG	2 cut(s)	89, 519
GluI	GCNGC	3 cut(s)	617, 620, 923
HapII	CCGG	2 cut(s)	529, 1091
Hin1II	CATG	3 cut(s)	145, 929, 1062
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	4 cut(s)	229, 452, 663, 1074
HpaII	CCGG	2 cut(s)	529, 1091
HphI	GGTGA	4 cut(s)	104, 695, 817, 976
Hpy166II	GTNNAC	3 cut(s)	580, 1027, 1064
Hpy188I	TCNGA	6 cut(s)	48, 340, 427, 457, 472, 814
Hpy188III	TCNNGA	4 cut(s)	107, 124, 413, 529
Hpy8I	GTNNAC	3 cut(s)	580, 1027, 1064
HpyAV	CCTTC	2 cut(s)	214, 994
HpyCH4III	ACNGT	4 cut(s)	749, 869, 892, 980
HpyF3I	CTNAG	4 cut(s)	54, 339, 804, 878
Hsp92II	CATG	3 cut(s)	145, 929, 1062
Kpn2I	TCCGGA	1 cut(s)	528
KpnI	GGTACC	1 cut(s)	1091
Kzo9I	GATC	3 cut(s)	109, 391, 409
LguI	GCTCTTC	2 cut(s)	584, 731
Lsp1109I	GCAGC	3 cut(s)	628, 631, 909
LweI	GCATC	2 cut(s)	557, 1001
MaeI	CTAG	2 cut(s)	89, 519
MaeIII	GTNAC	4 cut(s)	74, 781, 818, 869
MalI	GATC	3 cut(s)	111, 393, 411
MboI	GATC	3 cut(s)	109, 391, 409
MboII	GAAGA	8 cut(s)	419, 470, 506, 598, 601, 748, 894, 941
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	494, 743
MluCI	AATT	4 cut(s)	697, 729, 775, 1043
MlyI	GAGTC	3 cut(s)	223, 672, 1068
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	8 cut(s)	54, 362, 472, 595, 823, 826, 960, 1087
MroI	TCCGGA	1 cut(s)	528
MseI	TTAA	3 cut(s)	608, 732, 1079
MspI	CCGG	2 cut(s)	529, 1091
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	109, 391, 409
NlaIII	CATG	3 cut(s)	145, 929, 1062
NlaIV	GGNNCC	1 cut(s)	1089
NmuCI	GTSAC	3 cut(s)	781, 818, 869
NspI	RCATGY	1 cut(s)	1062
PciSI	GCTCTTC	2 cut(s)	584, 731
PfeI	GAWTC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	945
PkrI	GCNGC	3 cut(s)	618, 621, 924
PleI	GAGTC	3 cut(s)	223, 671, 1068
PpsI	GAGTC	3 cut(s)	223, 671, 1068
PsiI	TTATAA	1 cut(s)	1120
Psp124BI	GAGCTC	2 cut(s)	494, 743
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	1089
PspPI	GGNCC	1 cut(s)	1033
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	3 cut(s)	262, 1028, 1089
RsaNI	GTAC	3 cut(s)	261, 1027, 1088
SacI	GAGCTC	2 cut(s)	494, 743
SapI	GCTCTTC	2 cut(s)	584, 731
SaqAI	TTAA	3 cut(s)	608, 732, 1079
SatI	GCNGC	3 cut(s)	617, 620, 923
Sau3AI	GATC	3 cut(s)	109, 391, 409
Sau96I	GGNCC	1 cut(s)	1033
SchI	GAGTC	3 cut(s)	223, 672, 1068
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	494, 743
SfaNI	GCATC	2 cut(s)	557, 1001
SinI	GGWCC	1 cut(s)	1033
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	697, 729, 775, 1043
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	755
SspMI	CTAG	2 cut(s)	89, 519
SstI	GAGCTC	2 cut(s)	494, 743
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	4 cut(s)	749, 869, 892, 980
TaqI	TCGA	3 cut(s)	108, 147, 232
TasI	AATT	4 cut(s)	697, 729, 775, 1043
TatI	WGTACW	1 cut(s)	1026
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	3 cut(s)	608, 732, 1079
Tru9I	TTAA	3 cut(s)	608, 732, 1079
TscAI	CASTG	2 cut(s)	214, 754
TseFI	GTSAC	3 cut(s)	781, 818, 869
TseI	GCWGC	3 cut(s)	616, 619, 922
Tsp45I	GTSAC	3 cut(s)	781, 818, 869
TspDTI	ATGAA	4 cut(s)	161, 447, 626, 942
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	2 cut(s)	214, 754
Van91I	CCANNNNNTGG	1 cut(s)	945
VpaK11BI	GGWCC	1 cut(s)	1033
XceI	RCATGY	1 cut(s)	1062
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	2 cut(s)	89, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.