Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

43618654 .. 43620394

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGATGGCGGAGACCGAACCGGAAACCCAGAAACCCCAAGAAACCCGAAAGAGGGGAGATTGGTCCTTAAAGGACTTCGAGATCGGAAAGCCGCTGGGCAAAGGCAAGTTCGGGCGGGTCTACGTCGCCCGAGAAGTCAAGAGCCAATACGTCGTGGCATTGAAGGTGTTGTTCAAGAAGCAGATAAAGAAGTACAACATTCACCACCAGCTGAAGAGAGAGATGGAGATTCAGACGAGTCTGAGGCACCCCAACATTCTTCGTCTCTATGGTTGGTTCCATGATGATGAGCGCATCGTGTTGATTCTTGAGTACGCTCATGGCGGTGAGCTTTATGGCCTTTTGAGGGATTGTACCTACTTCACTGAGAAACGAGCCGCGACTTATATATTGAGCTTAGCGCAAGCTTTGGCCTATTGTCATGAGAAGGATGTGATTCATAGGGACATTAAGCCTGAAAACTTGTTGCTTGATCATGAGGGTCGATTGAAAATTGCAGACTTTGGATGGTCTGTACAGTCAAAGAATAAGAGACGCACCATGTGTGGAACTCTGGATTACTTAGCCCCAGAACTGGTGGAGAATAAAGCTCATGACTACGCAGTCGATAACTGGACTTTGGGCATTCTTTGCTATGAGTTTCTCTTTGGCGTTCCTCCCTTTGAGGCTGAAAGTCAAAAAGATACATTTCAAAGGATAGTGAAGGTTGACCTGAGCTTCCCCGCAACACCTCAAGTTTCTTCTGAAGCCAAAGACCTCATTACCAAGCTTCTCGTGAAGGACATCTCAAAGAGGCTCTCTCTTCAGAAGATCATGGAACACCCATGGATAGTTAAGAATGCAGATCCTACTGGTATCTGCAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

289

Amino Acids

33.55

Weight (kDa)

8.76

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	26 - 277	2.9e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	27 - 273	8.5e-43	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	123 - 221	2e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	380
AciI	CCGC	6 cut(s)	8, 92, 115, 324, 378, 723
AclWI	GGATC	1 cut(s)	839
AcuI	CTGAAG	3 cut(s)	233, 765, 788
AdeI	CACNNNGTG	1 cut(s)	543
AfaI	GTAC	4 cut(s)	194, 314, 355, 516
AfiI	CCNNNNNNNGG	4 cut(s)	51, 52, 346, 574
AgsI	TTSAA	4 cut(s)	163, 175, 490, 692
AluBI	AGCT	7 cut(s)	211, 331, 396, 407, 590, 717, 769
AluI	AGCT	7 cut(s)	211, 331, 396, 407, 590, 717, 769
Alw26I	GTCTC	3 cut(s)	5, 269, 526
AlwI	GGATC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	337, 411
AspLEI	GCGC	2 cut(s)	294, 403
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	194, 338
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	773
BccI	CCATC	2 cut(s)	217, 501
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	5, 269, 526
BfaI	CTAG	1 cut(s)	868
BisI	GCNGC	2 cut(s)	92, 378
BlpI	GCTNAGC	1 cut(s)	397
BlsI	GCNGC	2 cut(s)	93, 379
Bme18I	GGWCC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	248, 278
BmsI	GCATC	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	784, 816
Bpu10I	CCTNAGC	1 cut(s)	713
Bpu1102I	GCTNAGC	1 cut(s)	397
BpuEI	CTTGAG	2 cut(s)	329, 717
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	824
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 52, 346, 574
Bse1I	ACTGG	3 cut(s)	579, 617, 856
BseDI	CCNNGG	1 cut(s)	824
BseGI	GGATG	2 cut(s)	436, 512
BseLI	CCNNNNNNNGG	4 cut(s)	51, 52, 346, 574
BseMII	CTCAG	3 cut(s)	233, 357, 704
BseNI	ACTGG	3 cut(s)	579, 617, 856
BseYI	CCCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	339, 413
BshNI	GGYRCC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	4 cut(s)	51, 52, 346, 574
BsmAI	GTCTC	3 cut(s)	5, 269, 526
BsmBI	CGTCTC	2 cut(s)	269, 526
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	2 cut(s)	624, 844
BsnI	GGCC	2 cut(s)	339, 413
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	81, 472, 810, 844
Bsp1720I	GCTNAGC	1 cut(s)	397
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	6 cut(s)	8, 92, 115, 324, 378, 723
BspANI	GGCC	2 cut(s)	339, 413
BspCNI	CTCAG	3 cut(s)	234, 358, 705
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	3 cut(s)	421, 475, 592
BspLI	GGNNCC	2 cut(s)	248, 278
BspPI	GGATC	1 cut(s)	839
BspT107I	GGYRCC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	514
BsrI	ACTGG	3 cut(s)	579, 617, 856
BssECI	CCNNGG	1 cut(s)	824
BssMI	GATC	4 cut(s)	81, 472, 810, 844
BssSI	CACGAG	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	824
Bst2BI	CACGAG	1 cut(s)	773
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	2 cut(s)	209, 807
BstAPI	GCANNNNNTGC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	5 cut(s)	242, 366, 397, 562, 713
BstDSI	CCRYGG	1 cut(s)	824
BstF5I	GGATG	2 cut(s)	436, 512
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	294, 403
BstKTI	GATC	4 cut(s)	84, 475, 813, 847
BstMAI	GTCTC	3 cut(s)	5, 269, 526
BstMBI	GATC	4 cut(s)	81, 472, 810, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	630
BstUI	CGCG	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BsuRI	GGCC	2 cut(s)	339, 413
BtgI	CCRYGG	1 cut(s)	824
BtsCI	GGATG	2 cut(s)	436, 512
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	3 cut(s)	421, 475, 592
CfoI	GCGC	2 cut(s)	294, 403
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	4 cut(s)	193, 313, 354, 515
CviAII	CATG	8 cut(s)	281, 320, 422, 476, 541, 593, 814, 825
CviQI	GTAC	4 cut(s)	193, 313, 354, 515
DdeI	CTNAG	5 cut(s)	242, 366, 397, 562, 713
DpnI	GATC	4 cut(s)	83, 474, 812, 846
DpnII	GATC	4 cut(s)	81, 472, 810, 844
DraIII	CACNNNGTG	1 cut(s)	543
DrdI	GACNNNNNNGTC	1 cut(s)	602
DseDI	GACNNNNNNGTC	1 cut(s)	602
Eam1104I	CTCTTC	2 cut(s)	209, 807
EarI	CTCTTC	2 cut(s)	209, 807
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	824
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	3 cut(s)	233, 765, 788
Eco88I	CYCGRG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	824
ErhI	CCWWGG	1 cut(s)	824
Esp3I	CGTCTC	2 cut(s)	269, 526
FaeI	CATG	8 cut(s)	284, 323, 425, 479, 544, 596, 817, 828
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	8 cut(s)	280, 319, 421, 475, 540, 592, 813, 824
FauI	CCCGC	2 cut(s)	108, 730
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	92, 378
FokI	GGATG	2 cut(s)	443, 519
Fsp4HI	GCNGC	2 cut(s)	92, 378
FspBI	CTAG	1 cut(s)	868
GlaI	GCGC	2 cut(s)	293, 402
GluI	GCNGC	2 cut(s)	92, 378
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	339, 413
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	2 cut(s)	294, 403
Hin1II	CATG	8 cut(s)	284, 323, 425, 479, 544, 596, 817, 828
Hin6I	GCGC	2 cut(s)	292, 401
HinP1I	GCGC	2 cut(s)	292, 401
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	2 cut(s)	405, 767
HinfI	GANTC	4 cut(s)	229, 238, 304, 436
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	194, 338
Hpy166II	GTNNAC	2 cut(s)	121, 709
Hpy188I	TCNGA	5 cut(s)	86, 234, 243, 745, 807
Hpy188III	TCNNGA	9 cut(s)	79, 139, 175, 308, 422, 476, 554, 593, 775
Hpy8I	GTNNAC	2 cut(s)	121, 709
Hpy99I	CGWCG	2 cut(s)	128, 155
HpyAV	CCTTC	4 cut(s)	157, 421, 697, 772
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	2 cut(s)	123, 150
HpyCH4V	TGCA	3 cut(s)	497, 842, 861
HpyF10VI	GCNNNNNNNGC	1 cut(s)	630
HpyF3I	CTNAG	5 cut(s)	242, 366, 397, 562, 713
HpySE526I	ACGT	2 cut(s)	123, 150
Hsp92II	CATG	8 cut(s)	284, 323, 425, 479, 544, 596, 817, 828
HspAI	GCGC	2 cut(s)	292, 401
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	81, 472, 810, 844
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	868
MaeII	ACGT	2 cut(s)	123, 150
MalI	GATC	4 cut(s)	83, 474, 812, 846
MboI	GATC	4 cut(s)	81, 472, 810, 844
MboII	GAAGA	5 cut(s)	226, 251, 732, 794, 820
MflI	RGATCY	1 cut(s)	844
MluCI	AATT	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	9 cut(s)	45, 237, 339, 472, 658, 666, 741, 767, 786
MseI	TTAA	3 cut(s)	68, 450, 834
MslI	CAYNNNNRTG	2 cut(s)	285, 324
MspA1I	CMGCKG	2 cut(s)	94, 211
MspI	CCGG	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	624, 844
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	630
NcoI	CCATGG	1 cut(s)	824
NdeII	GATC	4 cut(s)	81, 472, 810, 844
NlaIII	CATG	8 cut(s)	284, 323, 425, 479, 544, 596, 817, 828
NlaIV	GGNNCC	2 cut(s)	248, 278
PagI	TCATGA	3 cut(s)	421, 475, 592
PctI	GAATGC	2 cut(s)	624, 844
PfeI	GAWTC	3 cut(s)	229, 304, 436
PkrI	GCNGC	2 cut(s)	93, 379
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	248, 278
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	844
PvuII	CAGCTG	1 cut(s)	211
RsaI	GTAC	4 cut(s)	194, 314, 355, 516
RsaNI	GTAC	4 cut(s)	193, 313, 354, 515
RseI	CAYNNNNRTG	2 cut(s)	285, 324
SaqAI	TTAA	3 cut(s)	68, 450, 834
SatI	GCNGC	2 cut(s)	92, 378
Sau3AI	GATC	4 cut(s)	81, 472, 810, 844
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	247
SfaNI	GCATC	1 cut(s)	303
SinI	GGWCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	285, 324
SmlI	CTYRAG	2 cut(s)	308, 732
SmoI	CTYRAG	2 cut(s)	308, 732
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	6 cut(s)	8, 92, 115, 324, 378, 723
SspMI	CTAG	1 cut(s)	868
StyI	CCWWGG	1 cut(s)	824
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	2 cut(s)	126, 153
TaqI	TCGA	3 cut(s)	78, 484, 606
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	492
TatI	WGTACW	2 cut(s)	192, 514
TauI	GCSGC	2 cut(s)	94, 380
TfiI	GAWTC	3 cut(s)	229, 304, 436
Tru1I	TTAA	3 cut(s)	68, 450, 834
Tru9I	TTAA	3 cut(s)	68, 450, 834
TscAI	CASTG	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.