Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

11065331 .. 11068108

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCAAAGAGGAAACCCGAACCCGAACCCGAAAACCCAGAACCCCAGAAAACCCTAAACAGAGGCGATTCGGCGGAGAGAGATACCACACCCGAAAACCCAGAAGAGTCGCCGGAAACCCGAAAGTGGTCCCTGAACGACTTCGAGATCGGAAAGCCGCTGGGCAGAGGCAAGTTCGGTCGGGTCTACGTGGCCCGGGAAGTCAAGAGCAAATACGTCGTCGCATTGAAGGTTTTGTTCAAGAAGCAGATAGAGAAGTACAACATTCACCACCAGCTGAGGAGAGAGATGGAGATTCAGACCAGTCTGAGGCACCCAAACATTCTGCGTCTCTATGGCTGGTTTCATGATGAGGAGCGCATCTTCTTGATTCTCGAGTATGCTCATGGCGGCGAGCTTTACGGGCTTTTGAGGGAGAATACTTGCCTCACTGAGAAACGAGCCGCCACTTATATATTGAGCTTGGCGCAAGCTTTGGTGTATTGTCATGAGAAAGATGTGATTCATAGGGACATAAAGCCGGAAAACTTGTTGCTTGATCATGAGGGTCGATTGAAAATTGCCGACTTTGGCTGGTCAGTACAGTCGAAAAACAAGAGACACACCATGTGTGGAACTCTGGATTACTTAGCTCCAGAACTGGTGCAGAACAAAGCTCATGACTACGCAGTTGATAACTGGACCTTGGGCGTTCTTTGCTATGAGTTTCTCTTTGGTGTTCCTCCCTTTGAGGCCGAAAGTCAGAAAGACACATTTCAGAGGATAGTGAAGGTTGACCTGAGCTTCCCTGCCACCCCTCAAGTTTCTGCTGAAGCCAAAGATCTCATCACCAAGCTTCTGGTGAAGGACACCTCAAAGAGGCTCTCTCTTCAAAAGATCATGGAACACCCATGGATTATTAAGAATGCAGATCCTACAGGTATCTGCAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

312

Amino Acids

36.02

Weight (kDa)

7.68

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 299	9.8e-78	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 295	7.8e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	4 cut(s)	74, 158, 390, 444
AclWI	GGATC	1 cut(s)	905
AcuI	CTGAAG	1 cut(s)	831
AdeI	CACNNNGTG	1 cut(s)	609
AfaI	GTAC	2 cut(s)	260, 582
AfiI	CCNNNNNNNGG	3 cut(s)	126, 309, 858
AgsI	TTSAA	4 cut(s)	229, 241, 556, 872
AluBI	AGCT	8 cut(s)	277, 397, 462, 473, 632, 656, 783, 835
AluI	AGCT	8 cut(s)	277, 397, 462, 473, 632, 656, 783, 835
Alw26I	GTCTC	2 cut(s)	335, 592
AlwI	GGATC	1 cut(s)	905
Ama87I	CYCGRG	2 cut(s)	195, 374
AoxI	GGCC	2 cut(s)	192, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	360, 469
AspS9I	GGNCC	3 cut(s)	129, 193, 681
AsuC2I	CCSGG	2 cut(s)	196, 197
AsuHPI	GGTGA	3 cut(s)	260, 820, 853
AvaI	CYCGRG	2 cut(s)	195, 374
AvaII	GGWCC	2 cut(s)	129, 681
BanI	GGYRCC	1 cut(s)	312
BbvCI	CCTCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	2 cut(s)	196, 197
BcoDI	GTCTC	2 cut(s)	335, 592
BfaI	CTAG	1 cut(s)	934
BfmI	CTRYAG	1 cut(s)	915
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	3 cut(s)	158, 391, 444
BlsI	GCNGC	3 cut(s)	159, 392, 445
Bme1390I	CCNGG	2 cut(s)	196, 197
Bme18I	GGWCC	2 cut(s)	129, 681
BmeT110I	CYCGRG	2 cut(s)	195, 374
BmgT120I	GGNCC	3 cut(s)	129, 193, 681
BmiI	GGNNCC	2 cut(s)	131, 314
BmrFI	CCNGG	2 cut(s)	196, 197
BmsI	GCATC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	850, 882
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	2 cut(s)	278, 779
BpuEI	CTTGAG	1 cut(s)	783
BpuMI	CCSGG	2 cut(s)	196, 197
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	195, 684, 890
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 309, 858
Bse1I	ACTGG	3 cut(s)	303, 645, 683
BseDI	CCNNGG	3 cut(s)	195, 684, 890
BseLI	CCNNNNNNNGG	3 cut(s)	126, 309, 858
BseMII	CTCAG	4 cut(s)	269, 299, 423, 770
BseNI	ACTGG	3 cut(s)	303, 645, 683
BseRI	GAGGAG	2 cut(s)	295, 368
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	665
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	194, 734
BshNI	GGYRCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	2 cut(s)	195, 374
BsiSI	CCGG	3 cut(s)	113, 196, 521
BslFI	GGGAC	2 cut(s)	115, 524
BslI	CCNNNNNNNGG	3 cut(s)	126, 309, 858
BsmAI	GTCTC	2 cut(s)	335, 592
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	115, 524
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	194, 734
BsoBI	CYCGRG	2 cut(s)	195, 374
Bsp143I	GATC	5 cut(s)	147, 538, 820, 876, 910
Bsp19I	CCATGG	1 cut(s)	890
BspACI	CCGC	4 cut(s)	74, 158, 390, 444
BspANI	GGCC	2 cut(s)	194, 734
BspCNI	CTCAG	4 cut(s)	270, 300, 424, 771
BspHI	TCATGA	4 cut(s)	346, 487, 541, 658
BspLI	GGNNCC	2 cut(s)	131, 314
BspPI	GGATC	1 cut(s)	905
BspT107I	GGYRCC	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	303, 645, 683
BssECI	CCNNGG	3 cut(s)	195, 684, 890
BssMI	GATC	5 cut(s)	147, 538, 820, 876, 910
BssT1I	CCWWGG	2 cut(s)	684, 890
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	2 cut(s)	99, 873
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	395, 471
BstDEI	CTNAG	5 cut(s)	278, 308, 432, 628, 779
BstDSI	CCRYGG	1 cut(s)	890
BstENI	CCTNNNNNAGG	1 cut(s)	856
BstHHI	GCGC	2 cut(s)	360, 469
BstKTI	GATC	5 cut(s)	150, 541, 823, 879, 913
BstMAI	GTCTC	2 cut(s)	335, 592
BstMBI	GATC	5 cut(s)	147, 538, 820, 876, 910
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 696
BstSCI	CCNGG	2 cut(s)	194, 195
BstSFI	CTRYAG	1 cut(s)	915
BstX2I	RGATCY	2 cut(s)	820, 910
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstYI	RGATCY	2 cut(s)	820, 910
BsuRI	GGCC	2 cut(s)	194, 734
BtgI	CCRYGG	1 cut(s)	890
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	395, 471
CciI	TCATGA	4 cut(s)	346, 487, 541, 658
CfoI	GCGC	2 cut(s)	360, 469
Cfr13I	GGNCC	3 cut(s)	129, 193, 681
Cfr9I	CCCGGG	1 cut(s)	195
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	259, 581
CviAII	CATG	8 cut(s)	347, 386, 488, 542, 607, 659, 880, 891
CviQI	GTAC	2 cut(s)	259, 581
DdeI	CTNAG	5 cut(s)	278, 308, 432, 628, 779
DpnI	GATC	5 cut(s)	149, 540, 822, 878, 912
DpnII	GATC	5 cut(s)	147, 538, 820, 876, 910
DraIII	CACNNNGTG	1 cut(s)	609
Eam1104I	CTCTTC	2 cut(s)	99, 873
EarI	CTCTTC	2 cut(s)	99, 873
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	684, 890
Eco47I	GGWCC	2 cut(s)	129, 681
Eco57I	CTGAAG	1 cut(s)	831
Eco88I	CYCGRG	2 cut(s)	195, 374
EcoNI	CCTNNNNNAGG	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	684, 890
ErhI	CCWWGG	2 cut(s)	684, 890
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	8 cut(s)	350, 389, 491, 545, 610, 662, 883, 894
FaqI	GGGAC	2 cut(s)	115, 524
FatI	CATG	8 cut(s)	346, 385, 487, 541, 606, 658, 879, 890
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	158, 391, 444
Fsp4HI	GCNGC	3 cut(s)	158, 391, 444
FspBI	CTAG	1 cut(s)	934
GlaI	GCGC	2 cut(s)	359, 468
GluI	GCNGC	3 cut(s)	158, 391, 444
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	194, 734
HapII	CCGG	3 cut(s)	113, 196, 521
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	360, 469
Hin1II	CATG	8 cut(s)	350, 389, 491, 545, 610, 662, 883, 894
Hin6I	GCGC	2 cut(s)	358, 467
HinP1I	GCGC	2 cut(s)	358, 467
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	2 cut(s)	471, 833
HinfI	GANTC	5 cut(s)	68, 107, 295, 370, 502
HpaII	CCGG	3 cut(s)	113, 196, 521
HphI	GGTGA	3 cut(s)	260, 820, 853
Hpy166II	GTNNAC	2 cut(s)	187, 775
Hpy188I	TCNGA	5 cut(s)	152, 300, 309, 744, 759
Hpy8I	GTNNAC	2 cut(s)	187, 775
Hpy99I	CGWCG	2 cut(s)	221, 224
HpyAV	CCTTC	3 cut(s)	223, 763, 838
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	2 cut(s)	189, 216
HpyCH4V	TGCA	3 cut(s)	646, 908, 927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 696
HpyF3I	CTNAG	5 cut(s)	278, 308, 432, 628, 779
HpySE526I	ACGT	2 cut(s)	189, 216
Hsp92II	CATG	8 cut(s)	350, 389, 491, 545, 610, 662, 883, 894
HspAI	GCGC	2 cut(s)	358, 467
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	147, 538, 820, 876, 910
LmnI	GCTCC	2 cut(s)	355, 637
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	934
MaeII	ACGT	2 cut(s)	189, 216
MalI	GATC	5 cut(s)	149, 540, 822, 878, 912
MboI	GATC	5 cut(s)	147, 538, 820, 876, 910
MboII	GAAGA	3 cut(s)	116, 355, 860
MflI	RGATCY	2 cut(s)	820, 910
MluCI	AATT	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	900
MspA1I	CMGCKG	2 cut(s)	160, 277
MspI	CCGG	3 cut(s)	113, 196, 521
MspR9I	CCNGG	2 cut(s)	196, 197
Mva1269I	GAATGC	1 cut(s)	910
MwoI	GCNNNNNNNGC	2 cut(s)	403, 696
NciI	CCSGG	2 cut(s)	196, 197
NcoI	CCATGG	1 cut(s)	890
NdeII	GATC	5 cut(s)	147, 538, 820, 876, 910
NlaIII	CATG	8 cut(s)	350, 389, 491, 545, 610, 662, 883, 894
NlaIV	GGNNCC	2 cut(s)	131, 314
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	4 cut(s)	346, 487, 541, 658
PctI	GAATGC	1 cut(s)	910
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	68, 295, 370, 502
PkrI	GCNGC	3 cut(s)	159, 392, 445
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	131, 314
PspPI	GGNCC	3 cut(s)	129, 193, 681
PsuI	RGATCY	2 cut(s)	820, 910
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	260, 582
RsaNI	GTAC	2 cut(s)	259, 581
SaqAI	TTAA	1 cut(s)	900
SatI	GCNGC	3 cut(s)	158, 391, 444
Sau3AI	GATC	5 cut(s)	147, 538, 820, 876, 910
Sau96I	GGNCC	3 cut(s)	129, 193, 681
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	196, 197
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	915
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	129, 681
SlaI	CTCGAG	1 cut(s)	374
SmaI	CCCGGG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	374, 798
SmoI	CTYRAG	2 cut(s)	374, 798
Sse9I	AATT	1 cut(s)	558
SsiI	CCGC	4 cut(s)	74, 158, 390, 444
SspMI	CTAG	1 cut(s)	934
StyD4I	CCNGG	2 cut(s)	194, 195
StyI	CCWWGG	2 cut(s)	684, 890
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	2 cut(s)	192, 219
TaqI	TCGA	4 cut(s)	144, 375, 550, 587
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	558
TatI	WGTACW	2 cut(s)	258, 580
TauI	GCSGC	3 cut(s)	160, 393, 446
TfiI	GAWTC	4 cut(s)	68, 295, 370, 502
Tru1I	TTAA	1 cut(s)	900
Tru9I	TTAA	1 cut(s)	900
TscAI	CASTG	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	335, 494
TspMI	CCCGGG	1 cut(s)	195
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	129, 681
XagI	CCTNNNNNAGG	1 cut(s)	856
XhoI	CTCGAG	1 cut(s)	374
XmaI	CCCGGG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.