Rh4AG049600
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
10394699 .. 10398071
3373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG049600.1

Sequence Viewer

Length: 1077 bp
ATGAAAATTCAAATTTCTGCAGATAAAAATACACTCGTGGCTTCTCAGATTTCAAAATCCAATCTTTCCTTTCTCTCAGTTTCTCTGGTTTTTTTTTTTTTCAAATCCCACCCAGAAATCCATCTCATGGCGACGAAATCCGATTCCCCAAAGAGGGAGTGGTCCCTGAACGACTTCGAGATCGGAAAGCCTCTCGGCAAAGGCAAATTCGGGCGGGTCTACGTGGCCCGAGAAGTCAAGGTACCTCGAATTCGGACTCACTCTCTTCCAAAATCGAATCTCGCATATATTAGGGTTTTGAAAAAATTTGGGGGGCAATTTTTTTTTTTTTTTTTTTTTTTGATGCAGAGCAAGTACGTGGTGGCGTTGAAGGTGTTGTTCAAGAAGCAGATAAAGAAGTACAAGATTCACCACCAGCTGAAGAGAGAGATGGAGATCCAGACCAGTCTCAGACACCCCAACATTCTTCGCCTCTACGGTTGGTTCCACGACGACGAACGCATCGTCTTGATCCTCGAGTACGCCCACGGCGGCGAGCTCTATGGGCTGCTCAGGGAGAACGCTCACCTCTCTGAGAACCAGACCGCCACGTATATACTGAGCCTGGCGCAGGCTTTGGCTTATTGTCACGAGAAGCATGTGATTCATAGGGATATCAAGCCGGAAAATTTGTTGCTTGATCATGAGGGTCGACTGAAAATTGCAGACTTTGGATGGTCTGTACAGTCAAGCAGCAAGAGACGAACAATGTGTGGAACGTTAGATTATTTAGCACCAGAAATGGTGGAGAACAGAGCTCATGATTATGCAGTGGATAACTGGACTTTGGGAATTCTCTGCTATGAGTTTCTTTATGGCACTCCTCCATTTGAGGCTGAAAGTCAAAGAGATACTTTCAAAAGGATTACTAACATTGACCTGAGCTTTCCTTCTAGCCCTCAAGTTTCTGCAGAAGCTAAACATCTCATTAGCCAGCTTCTGGTGAAGGACTCCTCTAAGAGGCTTTCTCTTCAGAAGATCATGGAACACCCTTGGATAATGAAGAATGCAGATCCTTCCGGTATCTGCAATAACTAG

Protein Analysis

358

Amino Acids

41.48

Weight (kDa)

9.47

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 116 - 346 2.4e-69 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 116 - 342 2.6e-39 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 187 - 292 1.9e-06 Kinase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 2 cut(s) 127, 979
AccI GTMKAC 2 cut(s) 219, 691
AciI CCGC 3 cut(s) 214, 531, 585
AclI AACGTT 1 cut(s) 758
AclWI GGATC 3 cut(s) 430, 505, 1046
AcsI RAATTY 7 cut(s) 6, 12, 206, 249, 305, 667, 831
AcuI CTGAAG 2 cut(s) 440, 995
AfaI GTAC 5 cut(s) 243, 356, 401, 521, 723
AfiI CCNNNNNNNGG 6 cut(s) 127, 153, 154, 610, 979, 999
AgsI TTSAA 7 cut(s) 11, 54, 103, 301, 370, 382, 898
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 6 cut(s) 418, 538, 797, 924, 956, 976
AluI AGCT 6 cut(s) 418, 538, 797, 924, 956, 976
Alw21I GWGCWC 2 cut(s) 540, 799
Alw26I GTCTC 2 cut(s) 452, 733
AlwI GGATC 3 cut(s) 430, 505, 1046
AlwNI CAGNNNCTG 1 cut(s) 979
Ama87I CYCGRG 2 cut(s) 228, 515
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 547, 732
ApoI RAATTY 7 cut(s) 6, 12, 206, 249, 305, 667, 831
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
Asp700I GAANNNNTTC 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 2 cut(s) 162, 226
AsuHPI GGTGA 3 cut(s) 401, 557, 994
AvaI CYCGRG 2 cut(s) 228, 515
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 2 cut(s) 540, 799
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BauI CACGAG 2 cut(s) 35, 629
Bbv12I GWGCWC 2 cut(s) 540, 799
BbvI GCAGC 2 cut(s) 534, 744
BccI CCATC 3 cut(s) 129, 424, 708
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 605
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 452, 733
BfaI CTAG 2 cut(s) 933, 1075
BfmI CTRYAG 2 cut(s) 18, 948
BisI GCNGC 3 cut(s) 532, 548, 733
BlsI GCNGC 3 cut(s) 533, 549, 734
Bme1390I CCNGG 1 cut(s) 605
Bme18I GGWCC 1 cut(s) 162
BmeT110I CYCGRG 2 cut(s) 228, 515
BmgT120I GGNCC 2 cut(s) 162, 226
BmiI GGNNCC 3 cut(s) 164, 243, 485
BmrFI CCNGG 1 cut(s) 605
BmsI GCATC 2 cut(s) 333, 510
BplI GAGNNNNNCTC 2 cut(s) 991, 1023
Bpu10I CCTNAGC 2 cut(s) 551, 920
BpuEI CTTGAG 1 cut(s) 924
BsaAI YACGTR 3 cut(s) 223, 358, 591
BsaBI GATNNNNATC 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 526, 1031
BsaWI WCCGGW 1 cut(s) 1058
Bsc4I CCNNNNNNNGG 6 cut(s) 127, 153, 154, 610, 979, 999
Bse1I ACTGG 2 cut(s) 444, 824
Bse8I GATNNNNATC 1 cut(s) 434
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 2 cut(s) 526, 1031
BseGI GGATG 1 cut(s) 719
BseJI GATNNNNATC 1 cut(s) 434
BseLI CCNNNNNNNGG 6 cut(s) 127, 153, 154, 610, 979, 999
BseMII CTCAG 7 cut(s) 59, 90, 463, 564, 565, 590, 911
BseNI ACTGG 2 cut(s) 444, 824
BseRI GAGGAG 2 cut(s) 852, 982
BseXI GCAGC 2 cut(s) 534, 744
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 540, 799
BsiHKCI CYCGRG 2 cut(s) 228, 515
BsiSI CCGG 2 cut(s) 662, 1059
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 6 cut(s) 127, 153, 154, 610, 979, 999
BsmAI GTCTC 2 cut(s) 452, 733
BsmBI CGTCTC 1 cut(s) 733
BsmFI GGGAC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 1 cut(s) 227
BsoBI CYCGRG 2 cut(s) 228, 515
Bsp1286I GDGCHC 2 cut(s) 540, 799
Bsp1407I TGTACA 1 cut(s) 721
Bsp143I GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
BspACI CCGC 3 cut(s) 214, 531, 585
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 7 cut(s) 58, 89, 462, 564, 565, 591, 912
BspHI TCATGA 2 cut(s) 682, 799
BspLI GGNNCC 3 cut(s) 164, 243, 485
BspMAI CTGCAG 2 cut(s) 22, 952
BspPI GGATC 3 cut(s) 430, 505, 1046
BspT107I GGYRCC 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 721
BsrI ACTGG 2 cut(s) 444, 824
BssECI CCNNGG 2 cut(s) 526, 1031
BssMI GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
BssSI CACGAG 2 cut(s) 35, 629
BssT1I CCWWGG 1 cut(s) 1031
Bst2BI CACGAG 2 cut(s) 35, 629
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 2 cut(s) 479, 726
Bst6I CTCTTC 3 cut(s) 270, 416, 1014
BstAUI TGTACA 1 cut(s) 721
BstBAI YACGTR 3 cut(s) 223, 358, 591
BstC8I GCNNGC 3 cut(s) 536, 612, 974
BstDEI CTNAG 8 cut(s) 45, 76, 449, 551, 573, 599, 920, 996
BstDSI CCRYGG 1 cut(s) 526
BstENI CCTNNNNNAGG 2 cut(s) 608, 997
BstF5I GGATG 1 cut(s) 719
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 6 cut(s) 183, 438, 513, 682, 1020, 1054
BstMAI GTCTC 2 cut(s) 452, 733
BstMBI GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 1 cut(s) 603
BstSFI CTRYAG 2 cut(s) 18, 948
BstV1I GCAGC 2 cut(s) 534, 744
BstX2I RGATCY 2 cut(s) 435, 1051
BstYI RGATCY 2 cut(s) 435, 1051
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 719
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 1 cut(s) 816
Cac8I GCNNGC 3 cut(s) 536, 612, 974
CaiI CAGNNNCTG 1 cut(s) 979
CciI TCATGA 2 cut(s) 682, 799
CfoI GCGC 1 cut(s) 610
Cfr13I GGNCC 2 cut(s) 162, 226
Csp6I GTAC 5 cut(s) 242, 355, 400, 520, 722
CviAII CATG 5 cut(s) 127, 638, 683, 800, 1021
CviQI GTAC 5 cut(s) 242, 355, 400, 520, 722
DdeI CTNAG 8 cut(s) 45, 76, 449, 551, 573, 599, 920, 996
DpnI GATC 6 cut(s) 182, 437, 512, 681, 1019, 1053
DpnII GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
Eam1104I CTCTTC 3 cut(s) 270, 416, 1014
EarI CTCTTC 3 cut(s) 270, 416, 1014
Ecl136II GAGCTC 2 cut(s) 538, 797
Eco130I CCWWGG 1 cut(s) 1031
Eco24I GRGCYC 2 cut(s) 540, 799
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 2 cut(s) 538, 797
Eco57I CTGAAG 2 cut(s) 440, 995
Eco88I CYCGRG 2 cut(s) 228, 515
EcoICRI GAGCTC 2 cut(s) 538, 797
EcoNI CCTNNNNNAGG 2 cut(s) 608, 997
EcoRI GAATTC 2 cut(s) 249, 831
EcoRII CCWGG 1 cut(s) 603
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 1031
EcoT38I GRGCYC 2 cut(s) 540, 799
ErhI CCWWGG 1 cut(s) 1031
Esp3I CGTCTC 1 cut(s) 733
FaeI CATG 5 cut(s) 130, 641, 686, 803, 1024
FalI AAGNNNNNCTT 2 cut(s) 877, 909
FaqI GGGAC 1 cut(s) 148
FatI CATG 5 cut(s) 126, 637, 682, 799, 1020
FauI CCCGC 1 cut(s) 207
FbaI TGATCA 1 cut(s) 679
FblI GTMKAC 2 cut(s) 219, 691
Fnu4HI GCNGC 3 cut(s) 532, 548, 733
FokI GGATG 1 cut(s) 726
FriOI GRGCYC 2 cut(s) 540, 799
Fsp4HI GCNGC 3 cut(s) 532, 548, 733
FspBI CTAG 2 cut(s) 933, 1075
GlaI GCGC 1 cut(s) 609
GluI GCNGC 3 cut(s) 532, 548, 733
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 662, 1059
HhaI GCGC 1 cut(s) 610
Hin1II CATG 5 cut(s) 130, 641, 686, 803, 1024
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HinfI GANTC 6 cut(s) 143, 256, 277, 406, 643, 989
HpaII CCGG 2 cut(s) 662, 1059
HphI GGTGA 3 cut(s) 401, 557, 994
Hpy166II GTNNAC 2 cut(s) 220, 692
Hpy188I TCNGA 7 cut(s) 48, 142, 185, 255, 452, 574, 1014
Hpy188III TCNNGA 7 cut(s) 178, 382, 439, 508, 629, 683, 800
Hpy8I GTNNAC 2 cut(s) 220, 692
Hpy99I CGWCG 3 cut(s) 136, 494, 497
HpyAV CCTTC 4 cut(s) 364, 939, 979, 1065
HpyCH4III ACNGT 2 cut(s) 479, 726
HpyCH4IV ACGT 4 cut(s) 222, 357, 590, 758
HpyCH4V TGCA 7 cut(s) 20, 346, 704, 809, 950, 1049, 1068
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 8 cut(s) 45, 76, 449, 551, 573, 599, 920, 996
HpySE526I ACGT 4 cut(s) 222, 357, 590, 758
Hsp92II CATG 5 cut(s) 130, 641, 686, 803, 1024
HspAI GCGC 1 cut(s) 608
KpnI GGTACC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
Lsp1109I GCAGC 2 cut(s) 534, 744
LweI GCATC 2 cut(s) 333, 510
MaeI CTAG 2 cut(s) 933, 1075
MaeII ACGT 4 cut(s) 222, 357, 590, 758
MaeIII GTNAC 1 cut(s) 626
MalI GATC 6 cut(s) 182, 437, 512, 681, 1019, 1053
MboI GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
MboII GAAGA 6 cut(s) 257, 433, 458, 1001, 1027, 1054
MflI RGATCY 2 cut(s) 435, 1051
MhlI GDGCHC 2 cut(s) 540, 799
MluCI AATT 9 cut(s) 6, 12, 206, 249, 305, 317, 667, 699, 831
MlyI GAGTC 2 cut(s) 250, 983
MroXI GAANNNNTTC 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 804
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 2 cut(s) 662, 1059
MspR9I CCNGG 1 cut(s) 605
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 1 cut(s) 605
MwoI GCNNNNNNNGC 1 cut(s) 544
NdeII GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
NlaIII CATG 5 cut(s) 130, 641, 686, 803, 1024
NlaIV GGNNCC 3 cut(s) 164, 243, 485
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 626
NspI RCATGY 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 515
PagI TCATGA 2 cut(s) 682, 799
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 4 cut(s) 143, 277, 406, 643
PflMI CCANNNNNTGG 2 cut(s) 127, 979
PkrI GCNGC 3 cut(s) 533, 549, 734
PleI GAGTC 2 cut(s) 250, 983
PpsI GAGTC 2 cut(s) 250, 983
Ppu21I YACGTR 3 cut(s) 223, 358, 591
Psp124BI GAGCTC 2 cut(s) 540, 799
Psp1406I AACGTT 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 3 cut(s) 164, 243, 485
PspPI GGNCC 2 cut(s) 162, 226
PspXI VCTCGAGB 1 cut(s) 515
PstI CTGCAG 2 cut(s) 22, 952
PstNI CAGNNNCTG 1 cut(s) 979
PsuI RGATCY 2 cut(s) 435, 1051
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 5 cut(s) 243, 356, 401, 521, 723
RsaNI GTAC 5 cut(s) 242, 355, 400, 520, 722
RseI CAYNNNNRTG 1 cut(s) 804
SacI GAGCTC 2 cut(s) 540, 799
SalI GTCGAC 1 cut(s) 690
SatI GCNGC 3 cut(s) 532, 548, 733
Sau3AI GATC 6 cut(s) 180, 435, 510, 679, 1017, 1051
Sau96I GGNCC 2 cut(s) 162, 226
SchI GAGTC 2 cut(s) 250, 983
ScrFI CCNGG 1 cut(s) 605
SduI GDGCHC 2 cut(s) 540, 799
SfaNI GCATC 2 cut(s) 333, 510
SfcI CTRYAG 2 cut(s) 18, 948
Sfr274I CTCGAG 1 cut(s) 515
SinI GGWCC 1 cut(s) 162
SlaI CTCGAG 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 804
SmlI CTYRAG 2 cut(s) 515, 939
SmoI CTYRAG 2 cut(s) 515, 939
Sse9I AATT 9 cut(s) 6, 12, 206, 249, 305, 317, 667, 699, 831
SsiI CCGC 3 cut(s) 214, 531, 585
SspMI CTAG 2 cut(s) 933, 1075
SstI GAGCTC 2 cut(s) 540, 799
StyD4I CCNGG 1 cut(s) 603
StyI CCWWGG 1 cut(s) 1031
TaaI ACNGT 2 cut(s) 479, 726
TaiI ACGT 4 cut(s) 225, 360, 593, 761
TaqI TCGA 5 cut(s) 177, 247, 275, 516, 691
TasI AATT 9 cut(s) 6, 12, 206, 249, 305, 317, 667, 699, 831
TatI WGTACW 2 cut(s) 399, 721
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 4 cut(s) 143, 277, 406, 643
TscAI CASTG 1 cut(s) 816
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 2 cut(s) 547, 732
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 3 cut(s) 17, 635, 1055
TspRI CASTG 1 cut(s) 816
Van91I CCANNNNNTGG 2 cut(s) 127, 979
VpaK11BI GGWCC 1 cut(s) 162
XagI CCTNNNNNAGG 2 cut(s) 608, 997
XapI RAATTY 7 cut(s) 6, 12, 206, 249, 305, 667, 831
XceI RCATGY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 515
XmiI GTMKAC 2 cut(s) 219, 691
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 933, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.