Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003316

Physical Location & Seq

Genomic Coordinates Reverse (-)

7591382 .. 7594198

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG046600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGACGAAATCCGATTCCCCAAAGAGGGAGTGGTCTCTGAACGACTTCGAGATCGGAAAGCCTCTCGGCAAAGGCAAATTCGGGCGGGTCTACGTGGCCCGAGAAGTCAAGAGCAAGTACGTGGTGGCGTTGAAGGTGTTGTTCAAGAAGCAGATAAAGAAGTACAAGATTCACCACCAGCTGAAGAGAGAGATGGAGATCCAGACCAGTCTCAGGCACCCCAACATTCTTCGCCTCTACGGTTGGTTCCACGACGACGAACGCATCGTCTTGATCCTCGAGTACGCCCACGGCGGCGAGCTGTATGGGCTGCTCAGGGAGAATACTCATCTCTCTGAGAAACAGGCCGCCACGTATATACTGAGCCTGGCGCAGGCTTTGGCTTATTGTCACGAGAAGCATGTGATTCATAGGGATATCAAGCCGGAAAATTTGTTGCTTGATCATGAGGGTCGACTGAAAATTGCAGACTTTGGATGGTCTGTACAGTCAAGCAGCAAGAGACGAACAATGTGTGGAACGTTAGATTATTTAGCACCAGAGATGGTGGAGAACAGAGCTCATGATTATGCAGTGGATAACTGGACTTTGGGAATTCTCTGCTATGAGTTTCTTTATGGCACTCCTCCATTTGAGGCTGAAAGTCAAAGAGATACTTTCAAAAGGATTACGAACATTGACCTGAGCTTTCCTTCTAGCCCTCAAGTTTCTGCAGAAGCTAAACATCTCATTAGCCAGCTTCTGGTGAAGGACTCCTCTAAGAGGCTTTCTCTTCAGAAGATCATGGAACACCCTTGGATAATGAAGAATGCAGATCCTTCCGGTATCTGCAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

280

Amino Acids

32.39

Weight (kDa)

9.07

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 268	1.4e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 264	4.5e-45	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	107 - 214	4.4e-07	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45490 AT2G45490
fragaria_vesca	FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_4g03900 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170 FvH4_7g12170
malus_domestica	MD02G1200900.v1.1
prunus_persica	Prupe.2G148200_v2.0.a1 Prupe.2G148200_v2.0.a1
pyrus_communis	pycom02g16420
rosa_chinensis	RchiOBHm_Chr1g0350921 RchiOBHm_Chr4g0393931
rosa_laevigata	RLG00000028441
rosa_multiflora	Rmu_sc0002665.1_g000020 Rmu_sc0014584.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304300 Rroxscaffold_5G00339010
rosa_rugosa	Rorug01G0215300 Rorug03G0370400 Rorug03G0370500
rosa_samantha	Rh1AG230000 Rh1BG199900 Rh1CG214400 Rh1DG227700 Rh4AG049600 Rh4BG046000 Rh4CG053100 Rh4DG046600
rosa_wichuraiana	Rw1G019910 Rw1G019940 Rw4G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	745
AccI	GTMKAC	2 cut(s)	93, 457
AciI	CCGC	3 cut(s)	88, 297, 351
AclI	AACGTT	1 cut(s)	524
AclWI	GGATC	3 cut(s)	196, 271, 812
AcsI	RAATTY	3 cut(s)	80, 433, 597
AcuI	CTGAAG	2 cut(s)	206, 761
AfaI	GTAC	4 cut(s)	122, 167, 287, 489
AfiI	CCNNNNNNNGG	6 cut(s)	27, 28, 216, 376, 745, 765
AgsI	TTSAA	3 cut(s)	136, 148, 664
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	6 cut(s)	184, 304, 563, 690, 722, 742
AluI	AGCT	6 cut(s)	184, 304, 563, 690, 722, 742
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	3 cut(s)	42, 218, 499
AlwI	GGATC	3 cut(s)	196, 271, 812
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	2 cut(s)	102, 281
AoxI	GGCC	2 cut(s)	99, 348
ApeKI	GCWGC	2 cut(s)	313, 498
ApoI	RAATTY	3 cut(s)	80, 433, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	167, 760
AvaI	CYCGRG	2 cut(s)	102, 281
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	300, 510
BccI	CCATC	3 cut(s)	190, 474, 541
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	42, 218, 499
BfaI	CTAG	2 cut(s)	699, 841
BfmI	CTRYAG	1 cut(s)	714
BisI	GCNGC	4 cut(s)	298, 314, 351, 499
BlsI	GCNGC	4 cut(s)	299, 315, 352, 500
Bme1390I	CCNGG	1 cut(s)	371
BmeT110I	CYCGRG	2 cut(s)	102, 281
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	221, 251
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
Bpu10I	CCTNAGC	2 cut(s)	317, 686
BpuEI	CTTGAG	1 cut(s)	690
BsaAI	YACGTR	3 cut(s)	97, 124, 357
BsaBI	GATNNNNATC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	292, 797
BsaWI	WCCGGW	1 cut(s)	824
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 28, 216, 376, 745, 765
Bse1I	ACTGG	2 cut(s)	210, 590
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	292, 797
BseGI	GGATG	1 cut(s)	485
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	6 cut(s)	27, 28, 216, 376, 745, 765
BseMII	CTCAG	5 cut(s)	229, 330, 331, 356, 677
BseNI	ACTGG	2 cut(s)	210, 590
BseRI	GAGGAG	2 cut(s)	618, 748
BseXI	GCAGC	2 cut(s)	300, 510
BshFI	GGCC	2 cut(s)	101, 350
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	565
BsiHKCI	CYCGRG	2 cut(s)	102, 281
BsiSI	CCGG	2 cut(s)	428, 825
BslI	CCNNNNNNNGG	6 cut(s)	27, 28, 216, 376, 745, 765
BsmAI	GTCTC	3 cut(s)	42, 218, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	101, 350
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	2 cut(s)	102, 281
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
BspACI	CCGC	3 cut(s)	88, 297, 351
BspANI	GGCC	2 cut(s)	101, 350
BspCNI	CTCAG	5 cut(s)	228, 330, 331, 357, 678
BspHI	TCATGA	2 cut(s)	448, 565
BspLI	GGNNCC	2 cut(s)	221, 251
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	3 cut(s)	196, 271, 812
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	210, 590
BssECI	CCNNGG	2 cut(s)	292, 797
BssMI	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	797
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	245, 492
Bst6I	CTCTTC	2 cut(s)	182, 780
BstAUI	TGTACA	1 cut(s)	487
BstBAI	YACGTR	3 cut(s)	97, 124, 357
BstC8I	GCNNGC	3 cut(s)	302, 378, 740
BstDEI	CTNAG	6 cut(s)	215, 317, 339, 365, 686, 762
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	2 cut(s)	374, 763
BstF5I	GGATG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	6 cut(s)	57, 204, 279, 448, 786, 820
BstMAI	GTCTC	3 cut(s)	42, 218, 499
BstMBI	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	300, 510
BstX2I	RGATCY	2 cut(s)	201, 817
BstYI	RGATCY	2 cut(s)	201, 817
BsuRI	GGCC	2 cut(s)	101, 350
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	3 cut(s)	302, 378, 740
CaiI	CAGNNNCTG	1 cut(s)	745
CciI	TCATGA	2 cut(s)	448, 565
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	4 cut(s)	121, 166, 286, 488
CviAII	CATG	4 cut(s)	404, 449, 566, 787
CviQI	GTAC	4 cut(s)	121, 166, 286, 488
DdeI	CTNAG	6 cut(s)	215, 317, 339, 365, 686, 762
DpnI	GATC	6 cut(s)	56, 203, 278, 447, 785, 819
DpnII	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
Eam1104I	CTCTTC	2 cut(s)	182, 780
EarI	CTCTTC	2 cut(s)	182, 780
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	797
Eco24I	GRGCYC	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	206, 761
Eco88I	CYCGRG	2 cut(s)	102, 281
EcoICRI	GAGCTC	1 cut(s)	563
EcoNI	CCTNNNNNAGG	2 cut(s)	374, 763
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	797
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	797
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	4 cut(s)	407, 452, 569, 790
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FatI	CATG	4 cut(s)	403, 448, 565, 786
FauI	CCCGC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	2 cut(s)	93, 457
Fnu4HI	GCNGC	4 cut(s)	298, 314, 351, 499
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	4 cut(s)	298, 314, 351, 499
FspBI	CTAG	2 cut(s)	699, 841
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	4 cut(s)	298, 314, 351, 499
HaeIII	GGCC	2 cut(s)	101, 350
HapII	CCGG	2 cut(s)	428, 825
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	4 cut(s)	407, 452, 569, 790
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HinfI	GANTC	4 cut(s)	17, 172, 409, 755
HpaII	CCGG	2 cut(s)	428, 825
HphI	GGTGA	2 cut(s)	167, 760
Hpy166II	GTNNAC	2 cut(s)	94, 458
Hpy188I	TCNGA	5 cut(s)	16, 42, 59, 340, 780
Hpy188III	TCNNGA	8 cut(s)	52, 112, 148, 205, 274, 395, 449, 566
Hpy8I	GTNNAC	2 cut(s)	94, 458
Hpy99I	CGWCG	3 cut(s)	10, 260, 263
HpyAV	CCTTC	4 cut(s)	130, 705, 745, 831
HpyCH4III	ACNGT	2 cut(s)	245, 492
HpyCH4IV	ACGT	4 cut(s)	96, 123, 356, 524
HpyCH4V	TGCA	5 cut(s)	470, 575, 716, 815, 834
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	6 cut(s)	215, 317, 339, 365, 686, 762
HpySE526I	ACGT	4 cut(s)	96, 123, 356, 524
Hsp92II	CATG	4 cut(s)	407, 452, 569, 790
HspAI	GCGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
Lsp1109I	GCAGC	2 cut(s)	300, 510
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	699, 841
MaeII	ACGT	4 cut(s)	96, 123, 356, 524
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	6 cut(s)	56, 203, 278, 447, 785, 819
MboI	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
MboII	GAAGA	5 cut(s)	199, 224, 767, 793, 820
MflI	RGATCY	2 cut(s)	201, 817
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	4 cut(s)	80, 433, 465, 597
MlyI	GAGTC	1 cut(s)	749
MroXI	GAANNNNTTC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	2 cut(s)	428, 825
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
NlaIII	CATG	4 cut(s)	407, 452, 569, 790
NlaIV	GGNNCC	2 cut(s)	221, 251
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	2 cut(s)	448, 565
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	17, 172, 409
PflMI	CCANNNNNTGG	1 cut(s)	745
PkrI	GCNGC	4 cut(s)	299, 315, 352, 500
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
Ppu21I	YACGTR	3 cut(s)	97, 124, 357
Psp124BI	GAGCTC	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	221, 251
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	201, 817
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	4 cut(s)	122, 167, 287, 489
RsaNI	GTAC	4 cut(s)	121, 166, 286, 488
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	565
SalI	GTCGAC	1 cut(s)	456
SatI	GCNGC	4 cut(s)	298, 314, 351, 499
Sau3AI	GATC	6 cut(s)	54, 201, 276, 445, 783, 817
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	714
Sfr274I	CTCGAG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	281, 705
SmoI	CTYRAG	2 cut(s)	281, 705
Sse9I	AATT	4 cut(s)	80, 433, 465, 597
SsiI	CCGC	3 cut(s)	88, 297, 351
SspMI	CTAG	2 cut(s)	699, 841
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	797
TaaI	ACNGT	2 cut(s)	245, 492
TaiI	ACGT	4 cut(s)	99, 126, 359, 527
TaqI	TCGA	3 cut(s)	51, 282, 457
TasI	AATT	4 cut(s)	80, 433, 465, 597
TatI	WGTACW	2 cut(s)	165, 487
TauI	GCSGC	2 cut(s)	300, 353
TfiI	GAWTC	3 cut(s)	17, 172, 409
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	313, 498
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	401, 821
TspRI	CASTG	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	745
XagI	CCTNNNNNAGG	2 cut(s)	374, 763
XapI	RAATTY	3 cut(s)	80, 433, 597
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	281
XmiI	GTMKAC	2 cut(s)	93, 457
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	699, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.