Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Reverse (-)

5094504 .. 5095295

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05724.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCAAATAGAGGATCACATGAGAAAAGGAAAGCTTACACAGTACATAGTGCAAGGAAATGGTTCGGTCCCAACAGTTAATCCAAACACACCAGCTAACCAAGTTTCCCAGAAGAGCGGGTCCGTACGTGAGATCCTAGCTATTCATGGAAGGCCAATCTCCCCTGGAGAAGATGAAACAAGGTTGCGGTCAGAAATAAGGCGGGAAGAAAAAATAAGGAGGGTATGTGCCATTGAGAAAGAAGTTAATTTGGAAGCACGACCAGGACAGGAGCTAGTCATTAGCTTCTCAAAGCAAGACGCGGTCGGGGTGCAATTTTCACATAGAGATGCGCTGGTAGTCTCAGTCCAAGTTGCCAACTGCCTCATGAGGAGGGTAATGATCGATGAAGGGAGCAGCGCGGAAGTCATGTTCCTTGACGCATTCAGGCAACTCAAACTTGGCGACAACCATATCAAGCCTAGCAGAGCACCACTTACCGGTTTCGAGGGAACCGAGACATGGCCTATGGGAGAAATCACGTTGTTGGTGACTATTGCAGATAAAACGGTGGAGATCGATTTTGTGGTGGTTGATAGGCCATCGTCATATAATGCAATTCTCGGAAGAGATTGGATGCATAAAATGGAAGCAGAAGCGTCATCCAGGAAAAAGAGTTCTGCTCCTCGTGAAGAGCAAGAAATGCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.77

Weight (kDa)

6.25

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	2 cut(s)	302, 401
AciI	CCGC	5 cut(s)	117, 187, 202, 302, 401
AclWI	GGATC	2 cut(s)	21, 127
AfaI	GTAC	2 cut(s)	44, 126
AfiI	CCNNNNNNNGG	2 cut(s)	479, 501
AgeI	ACCGGT	1 cut(s)	479
AjnI	CCWGG	3 cut(s)	163, 262, 644
AloI	GAACNNNNNNTCC	4 cut(s)	395, 427, 640, 672
AluBI	AGCT	5 cut(s)	34, 95, 140, 274, 285
AluI	AGCT	5 cut(s)	34, 95, 140, 274, 285
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	346, 491
AlwI	GGATC	2 cut(s)	21, 127
AoxI	GGCC	3 cut(s)	152, 503, 578
ApeKI	GCWGC	1 cut(s)	396
AsiGI	ACCGGT	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	2 cut(s)	334, 401
AspS9I	GGNCC	2 cut(s)	67, 120
AsuHPI	GGTGA	1 cut(s)	541
AvaII	GGWCC	2 cut(s)	67, 120
BauI	CACGAG	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	589
BciT130I	CCWGG	3 cut(s)	165, 264, 646
BcoDI	GTCTC	2 cut(s)	346, 491
BfaI	CTAG	3 cut(s)	137, 275, 462
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	165, 264, 646
Bme18I	GGWCC	2 cut(s)	67, 120
BmgT120I	GGNCC	2 cut(s)	67, 120
BmiI	GGNNCC	3 cut(s)	69, 121, 493
BmrFI	CCNGG	3 cut(s)	165, 264, 646
BmsI	GCATC	2 cut(s)	319, 606
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BpmI	CTGGAG	1 cut(s)	186
Bsa29I	ATCGAT	2 cut(s)	384, 558
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 501
Bse118I	RCCGGY	1 cut(s)	479
BseBI	CCWGG	3 cut(s)	165, 264, 646
BseCI	ATCGAT	2 cut(s)	384, 558
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	621, 641
BseLI	CCNNNNNNNGG	2 cut(s)	479, 501
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	385, 654
BseXI	GCAGC	1 cut(s)	408
Bsh1236I	CGCG	2 cut(s)	302, 401
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	154, 505, 580
BshTI	ACCGGT	1 cut(s)	479
BshVI	ATCGAT	2 cut(s)	384, 558
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	480
BsiWI	CGTACG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	479, 501
BsmAI	GTCTC	2 cut(s)	346, 491
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	154, 505, 580
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	13, 132, 381, 555
BspACI	CCGC	5 cut(s)	117, 187, 202, 302, 401
BspANI	GGCC	3 cut(s)	154, 505, 580
BspCNI	CTCAG	1 cut(s)	356
BspDI	ATCGAT	2 cut(s)	384, 558
BspFNI	CGCG	2 cut(s)	302, 401
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	69, 121, 493
BspPI	GGATC	2 cut(s)	21, 127
BspQI	GCTCTTC	2 cut(s)	107, 666
BsrBI	CCGCTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	13, 132, 381, 555
BssSI	CACGAG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	3 cut(s)	165, 264, 646
Bst4CI	ACNGT	3 cut(s)	42, 76, 550
Bst6I	CTCTTC	3 cut(s)	107, 601, 666
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	621, 641
BstFNI	CGCG	2 cut(s)	302, 401
BstHHI	GCGC	2 cut(s)	334, 401
BstKTI	GATC	4 cut(s)	16, 135, 384, 558
BstMAI	GTCTC	2 cut(s)	346, 491
BstMBI	GATC	4 cut(s)	13, 132, 381, 555
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	682
BstNI	CCWGG	3 cut(s)	165, 264, 646
BstSCI	CCNGG	3 cut(s)	163, 262, 644
BstUI	CGCG	2 cut(s)	302, 401
BstV1I	GCAGC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu15I	ATCGAT	2 cut(s)	384, 558
BsuRI	GGCC	3 cut(s)	154, 505, 580
BsuTUI	ATCGAT	2 cut(s)	384, 558
BtsCI	GGATG	2 cut(s)	621, 641
Cac8I	GCNNGC	1 cut(s)	687
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	334, 401
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	67, 120
ClaI	ATCGAT	2 cut(s)	384, 558
CseI	GACGC	3 cut(s)	308, 428, 627
Csp6I	GTAC	2 cut(s)	43, 125
CspAI	ACCGGT	1 cut(s)	479
CviAII	CATG	5 cut(s)	19, 146, 367, 409, 501
CviJI	RGCY	9 cut(s)	34, 95, 140, 154, 274, 285, 460, 505, 580
CviKI_1	RGCY	9 cut(s)	34, 95, 140, 154, 274, 285, 460, 505, 580
CviQI	GTAC	2 cut(s)	43, 125
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	4 cut(s)	15, 134, 383, 557
DpnII	GATC	4 cut(s)	13, 132, 381, 555
Eam1104I	CTCTTC	3 cut(s)	107, 601, 666
EarI	CTCTTC	3 cut(s)	107, 601, 666
Eco47I	GGWCC	2 cut(s)	67, 120
EcoRII	CCWGG	3 cut(s)	163, 262, 644
EcoT22I	ATGCAT	1 cut(s)	621
FaeI	CATG	5 cut(s)	22, 149, 370, 412, 504
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	5 cut(s)	18, 145, 366, 408, 500
FauI	CCCGC	2 cut(s)	110, 195
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	2 cut(s)	628, 628
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	3 cut(s)	137, 275, 462
GlaI	GCGC	2 cut(s)	333, 400
GluI	GCNGC	1 cut(s)	397
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	154, 505, 580
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	3 cut(s)	308, 428, 627
HhaI	GCGC	2 cut(s)	334, 401
Hin1II	CATG	5 cut(s)	22, 149, 370, 412, 504
Hin6I	GCGC	2 cut(s)	332, 399
HinP1I	GCGC	2 cut(s)	332, 399
HindIII	AAGCTT	1 cut(s)	32
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	541
Hpy188I	TCNGA	2 cut(s)	193, 605
Hpy188III	TCNNGA	2 cut(s)	367, 668
HpyAV	CCTTC	2 cut(s)	144, 383
HpyCH4III	ACNGT	3 cut(s)	42, 76, 550
HpyCH4IV	ACGT	2 cut(s)	127, 521
HpyCH4V	TGCA	7 cut(s)	4, 52, 313, 539, 596, 619, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	682
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	2 cut(s)	127, 521
Hsp92II	CATG	5 cut(s)	22, 149, 370, 412, 504
HspAI	GCGC	2 cut(s)	332, 399
Kzo9I	GATC	4 cut(s)	13, 132, 381, 555
LguI	GCTCTTC	2 cut(s)	107, 666
LmnI	GCTCC	3 cut(s)	271, 393, 667
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	2 cut(s)	319, 606
MaeI	CTAG	3 cut(s)	137, 275, 462
MaeII	ACGT	2 cut(s)	127, 521
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	4 cut(s)	15, 134, 383, 557
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	4 cut(s)	13, 132, 381, 555
MboII	GAAGA	5 cut(s)	124, 182, 218, 618, 683
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	3 cut(s)	247, 314, 597
MnlI	CCTC	7 cut(s)	4, 213, 363, 366, 374, 481, 675
Mph1103I	ATGCAT	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	2 cut(s)	78, 246
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	3 cut(s)	165, 264, 646
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	3 cut(s)	165, 264, 646
MvnI	CGCG	2 cut(s)	302, 401
MwoI	GCNNNNNNNGC	1 cut(s)	682
NdeII	GATC	4 cut(s)	13, 132, 381, 555
NlaIII	CATG	5 cut(s)	22, 149, 370, 412, 504
NlaIV	GGNNCC	3 cut(s)	69, 121, 493
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	621
PagI	TCATGA	1 cut(s)	366
PciSI	GCTCTTC	2 cut(s)	107, 666
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	61
Pfl23II	CGTACG	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	644
PinAI	ACCGGT	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	3 cut(s)	163, 262, 644
PspGI	CCWGG	3 cut(s)	163, 262, 644
PspLI	CGTACG	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	69, 121, 493
PspPI	GGNCC	2 cut(s)	67, 120
PsuI	RGATCY	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	44, 126
RsaNI	GTAC	2 cut(s)	43, 125
RseI	CAYNNNNRTG	1 cut(s)	327
SapI	GCTCTTC	2 cut(s)	107, 666
SaqAI	TTAA	2 cut(s)	78, 246
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	4 cut(s)	13, 132, 381, 555
Sau96I	GGNCC	2 cut(s)	67, 120
ScrFI	CCNGG	3 cut(s)	165, 264, 646
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	8 cut(s)	36, 97, 130, 142, 185, 276, 287, 524
SfaNI	GCATC	2 cut(s)	319, 606
SinI	GGWCC	2 cut(s)	67, 120
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	247, 314, 597
SsiI	CCGC	5 cut(s)	117, 187, 202, 302, 401
SspMI	CTAG	3 cut(s)	137, 275, 462
StyD4I	CCNGG	3 cut(s)	163, 262, 644
TaaI	ACNGT	3 cut(s)	42, 76, 550
TaiI	ACGT	2 cut(s)	130, 524
TaqI	TCGA	3 cut(s)	384, 486, 558
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	3 cut(s)	247, 314, 597
TatI	WGTACW	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	78, 246
Tru9I	TTAA	2 cut(s)	78, 246
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	134, 189, 402
TspGWI	ACGGA	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	67, 120
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	3 cut(s)	137, 275, 462
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.