RLG00000007107

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006403
Physical Location & Seq
Forward (+)
13613349 .. 13615177
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007107

Sequence Viewer

Length: 747 bp
ATGAACTCATATTATGATCCTTCTAAAAAGAGTTTTTCTAGACTTTCCTTCATGAACTGGAGGCGTTCAAGGTTACGGTCATTGATCGAGCGCCACCCTAGGGTTTCCCAGAACCAAAATCTCCTCTCCATCGTCTGCCATAGCAAACAAGCTCGACACTCCGCAACTCCCATAAGTCAAGAAGCAGGTGAATCATGTCTGGCTCTGACGAGTGACGATGACATAAAGTTTTCAAATGAGGACTTGAGGGGACTTGAAGTCCCCCACAACGATGCACTTGTTGTGAGCATGATGGTGGCAAACACTAGGCTGGACAAGATTTTCTGTACCACGGGCTTCTCCCACAGTATCATTTATCTTTCCACTCTGAAGCGATTGGGAATCAGCAAAAAAGATCTTCGCCCCCAGAAAGAGACTGTGCGAGGTGCCTTGGGGGAAGAACACAAGTCGGTGGGGAAAATAACTCTCAATGTCACAGCTGGTGATAGGCCCCGATTCTGTACATTCATGGTGGAATTTGTGGTGATGGACAAGCCTTCAGCATGTGACATCATTTTTGGAGTGAAAGGGTTAGCTGAGAAGGGAGCAGTAATCTCAGGATATCATCTACTCATCCGCTTCAGGACTGAAGCTGGAATTGGAGAGGTCAGAGCAAGTCAGCAGATAGCTAGAGACTGTGAGAAGGCTATCTTGGAAGAAGCAAGGCGCAAGGACCCTTCAGTCAAAAAGGTGGCAGTGGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

249

Amino Acids

27.8

Weight (kDa)

9.51

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
AasI GACNNNNNNGTC 1 cut(s) 719
Acc36I ACCTGC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 2 cut(s) 162, 616
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 5 cut(s) 389, 522, 604, 648, 702
AfaI GTAC 2 cut(s) 328, 502
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 3 cut(s) 69, 234, 257
AhdI GACNNNNNGTC 1 cut(s) 257
AjuI GAANNNNNNNTTGG 4 cut(s) 621, 653, 674, 706
AluBI AGCT 5 cut(s) 152, 479, 575, 632, 668
AluI AGCT 5 cut(s) 152, 479, 575, 632, 668
Alw26I GTCTC 2 cut(s) 407, 666
AlwI GGATC 1 cut(s) 11
AoxI GGCC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 515
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 2 cut(s) 93, 708
AspS9I GGNCC 2 cut(s) 489, 712
AsuHPI GGTGA 3 cut(s) 200, 494, 535
AvaII GGWCC 1 cut(s) 712
AvrII CCTAGG 1 cut(s) 98
BanI GGYRCC 1 cut(s) 425
BccI CCATC 3 cut(s) 137, 286, 520
BcoDI GTCTC 2 cut(s) 407, 666
BfaI CTAG 4 cut(s) 39, 99, 306, 669
BfoI RGCGCY 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 176
BglII AGATCT 1 cut(s) 394
BlnI CCTAGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 712
BmeRI GACNNNNNGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 489, 712
BmiI GGNNCC 3 cut(s) 427, 491, 714
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 98, 330, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 98, 330, 429
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 567, 609
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 490
BshNI GGYRCC 1 cut(s) 425
BslFI GGGAC 2 cut(s) 245, 264
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 407, 666
BsmFI GGGAC 2 cut(s) 245, 264
BsnI GGCC 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 3 cut(s) 16, 84, 394
BspACI CCGC 2 cut(s) 162, 616
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 2 cut(s) 568, 608
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 427, 491, 714
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 425
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 98, 330, 429
BssMI GATC 3 cut(s) 16, 84, 394
BssT1I CCWWGG 2 cut(s) 98, 429
Bst4CI ACNGT 4 cut(s) 78, 347, 418, 677
BstAUI TGTACA 1 cut(s) 500
BstDEI CTNAG 2 cut(s) 576, 595
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 612
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 708
BstKTI GATC 3 cut(s) 19, 87, 397
BstMAI GTCTC 2 cut(s) 407, 666
BstMBI GATC 3 cut(s) 16, 84, 394
BstNSI RCATGY 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 490
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 612
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
BveI ACCTGC 1 cut(s) 176
CciI TCATGA 1 cut(s) 51
CfoI GCGC 2 cut(s) 93, 708
Cfr13I GGNCC 2 cut(s) 489, 712
Csp6I GTAC 2 cut(s) 327, 501
CviAII CATG 5 cut(s) 52, 195, 289, 508, 543
CviQI GTAC 2 cut(s) 327, 501
DdeI CTNAG 2 cut(s) 576, 595
DpnI GATC 3 cut(s) 18, 86, 396
DpnII GATC 3 cut(s) 16, 84, 394
DrdI GACNNNNNNGTC 1 cut(s) 719
DriI GACNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 719
Eam1105I GACNNNNNGTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 98, 429
Eco32I GATATC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 712
Eco57I CTGAAG 5 cut(s) 389, 522, 604, 648, 702
EcoO109I RGGNCCY 2 cut(s) 489, 712
EcoRV GATATC 1 cut(s) 602
EcoT14I CCWWGG 2 cut(s) 98, 429
ErhI CCWWGG 2 cut(s) 98, 429
FaeI CATG 5 cut(s) 55, 198, 292, 511, 546
FalI AAGNNNNNCTT 2 cut(s) 674, 706
FaqI GGGAC 2 cut(s) 245, 264
FatI CATG 5 cut(s) 51, 194, 288, 507, 542
FokI GGATG 1 cut(s) 599
FspBI CTAG 4 cut(s) 39, 99, 306, 669
GlaI GCGC 2 cut(s) 92, 707
GsuI CTGGAG 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 490
HhaI GCGC 2 cut(s) 93, 708
Hin1II CATG 5 cut(s) 55, 198, 292, 511, 546
Hin6I GCGC 2 cut(s) 91, 706
HinP1I GCGC 2 cut(s) 91, 706
HinfI GANTC 3 cut(s) 191, 381, 495
HphI GGTGA 3 cut(s) 200, 494, 535
Hpy188I TCNGA 3 cut(s) 207, 369, 650
Hpy188III TCNNGA 5 cut(s) 39, 52, 179, 597, 622
HpyAV CCTTC 6 cut(s) 30, 58, 546, 574, 676, 726
HpyCH4III ACNGT 4 cut(s) 78, 347, 418, 677
HpyCH4V TGCA 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 576, 595
Hsp92II CATG 5 cut(s) 55, 198, 292, 511, 546
HspAI GCGC 2 cut(s) 91, 706
Kzo9I GATC 3 cut(s) 16, 84, 394
LmnI GCTCC 1 cut(s) 584
LweI GCATC 1 cut(s) 262
MaeI CTAG 4 cut(s) 39, 99, 306, 669
MaeIII GTNAC 4 cut(s) 72, 212, 472, 545
MalI GATC 3 cut(s) 18, 86, 396
MboI GATC 3 cut(s) 16, 84, 394
MboII GAAGA 3 cut(s) 389, 449, 707
MflI RGATCY 1 cut(s) 394
MluCI AATT 2 cut(s) 515, 636
MnlI CCTC 6 cut(s) 54, 134, 232, 240, 416, 637
MslI CAYNNNNRTG 2 cut(s) 270, 293
MspA1I CMGCKG 1 cut(s) 479
NdeII GATC 3 cut(s) 16, 84, 394
NlaIII CATG 5 cut(s) 55, 198, 292, 511, 546
NlaIV GGNNCC 3 cut(s) 427, 491, 714
NmuCI GTSAC 3 cut(s) 212, 472, 545
NspI RCATGY 1 cut(s) 546
PagI TCATGA 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 176
PfeI GAWTC 3 cut(s) 191, 381, 495
PpuMI RGGWCCY 1 cut(s) 712
Psp5II RGGWCCY 1 cut(s) 712
PspN4I GGNNCC 3 cut(s) 427, 491, 714
PspPI GGNCC 2 cut(s) 489, 712
PspPPI RGGWCCY 1 cut(s) 712
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 2 cut(s) 328, 502
RsaNI GTAC 2 cut(s) 327, 501
RseI CAYNNNNRTG 2 cut(s) 270, 293
Sau3AI GATC 3 cut(s) 16, 84, 394
Sau96I GGNCC 2 cut(s) 489, 712
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 2 cut(s) 270, 293
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 515, 636
SsiI CCGC 2 cut(s) 162, 616
SspMI CTAG 4 cut(s) 39, 99, 306, 669
StyI CCWWGG 2 cut(s) 98, 429
TaaI ACNGT 4 cut(s) 78, 347, 418, 677
TaqI TCGA 2 cut(s) 87, 154
TasI AATT 2 cut(s) 515, 636
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 3 cut(s) 191, 381, 495
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 3 cut(s) 212, 472, 545
Tsp45I GTSAC 3 cut(s) 212, 472, 545
TspDTI ATGAA 4 cut(s) 17, 40, 68, 496
TspRI CASTG 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 1 cut(s) 546
XmaJI CCTAGG 1 cut(s) 98
XspI CTAG 4 cut(s) 39, 99, 306, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.