Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Reverse (-)

22968874 .. 22970116

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G216400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAAGAGGAAGGCCAAAACACTTGTTTTCCTACTCACGCTCTCATTATTTTTATGCAAGCTGCCGGGGCTCCATGGAAAACAAAGCGACAACGATGGCCCACAGAGCAACACAATCACCTTCACGGATGAAGACCTCAGGGGAATTGAAGTCCCTCATAACGACCGCCTTGTGGTCTCCATGACCGTCGCAAACTCTACAAGACTAGACAAGATTCTCGTGGCCAACGGCGCTTCAGCCAACGTTCTTTTCTTCCACTCCTTAAAGCGATTAGGGTTTACAGAGAGAGACGTGGAGAAGGTGGAGATTCCCCGTGATTATGTAGACCCTAAGTCGTTTTTGGGGATAATAGCTCTCCCAGTGACGATTGGGGACGAGCCGAGATCGAGCACGGTCATGGTGGACTTCTGGGTGCATGCGAGCTACTCCTTTGCAGCATACGACGCCATTTTTGGCATACCGGGGTTAAGCGCACTGCGGGGAGTATCGTCTACTTACCACCTTCTCCTCCGGTTCCCCACTGAAGCCGGAATCGGACAAGTTCGAGGCGATCAGCTGCTAGCTAGAAAGTTGGTGAAGAAGCTCCTGCAGATGCAAGTGAAGGCCGGGGACGTTGACACCCATTTGAACTGGTTGGTGGCTTTAATACCGTTACTTATTATGGTTTTTGCAAGAGGCAATGTCCATCCCTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.66

Weight (kDa)

9.21

Isoelectric Point (pI)

25.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	324, 491
AciI	CCGC	2 cut(s)	166, 478
AclI	AACGTT	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	222
AcuI	CTGAAG	2 cut(s)	219, 543
AcyI	GRCGYC	1 cut(s)	444
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	149, 628
AhdI	GACNNNNNGTC	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	6 cut(s)	61, 353, 423, 556, 563, 583
AluI	AGCT	6 cut(s)	61, 353, 423, 556, 563, 583
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	181, 282
AoxI	GGCC	4 cut(s)	12, 97, 222, 603
ApeKI	GCWGC	3 cut(s)	61, 434, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspLEI	GCGC	2 cut(s)	233, 473
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	3 cut(s)	66, 462, 607
AsuHPI	GGTGA	2 cut(s)	109, 586
AsuNHI	GCTAGC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	48, 446, 543
BccI	CCATC	2 cut(s)	89, 693
BceAI	ACGGC	1 cut(s)	244
BcnI	CCSGG	3 cut(s)	66, 462, 607
BcoDI	GTCTC	2 cut(s)	181, 282
BfaI	CTAG	3 cut(s)	206, 560, 564
BfmI	CTRYAG	1 cut(s)	587
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	3 cut(s)	62, 435, 557
BlsI	GCNGC	3 cut(s)	63, 436, 558
Bme1390I	CCNGG	3 cut(s)	66, 462, 607
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	71, 515
BmrFI	CCNGG	3 cut(s)	66, 462, 607
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	582
BmtI	GCTAGC	1 cut(s)	563
BmuI	ACTGGG	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	138
BpuMI	CCSGG	3 cut(s)	66, 462, 607
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	65, 73, 461, 606
BsaWI	WCCGGW	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	359, 635
Bse21I	CCTNAGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	685
BseDI	CCNNGG	4 cut(s)	65, 73, 461, 606
BseGI	GGATG	2 cut(s)	133, 685
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	359, 635
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	48, 446, 543
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	4 cut(s)	14, 99, 224, 605
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	5 cut(s)	65, 461, 511, 528, 606
BslFI	GGGAC	3 cut(s)	137, 386, 623
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	181, 282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	3 cut(s)	137, 386, 623
BsnI	GGCC	4 cut(s)	14, 99, 224, 605
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	72, 392
Bsp143I	GATC	2 cut(s)	383, 550
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	2 cut(s)	166, 478
BspANI	GGCC	4 cut(s)	14, 99, 224, 605
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	71, 515
BspMAI	CTGCAG	1 cut(s)	591
BspOI	GCTAGC	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	359, 635
BssECI	CCNNGG	4 cut(s)	65, 73, 461, 606
BssMI	GATC	2 cut(s)	383, 550
BssNI	GRCGYC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	218
Bst4CI	ACNGT	3 cut(s)	187, 394, 651
BstACI	GRCGYC	1 cut(s)	444
BstC8I	GCNNGC	4 cut(s)	59, 417, 421, 561
BstDEI	CTNAG	2 cut(s)	137, 330
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	133, 685
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	233, 473
BstKTI	GATC	2 cut(s)	386, 553
BstMAI	GTCTC	2 cut(s)	181, 282
BstMBI	GATC	2 cut(s)	383, 550
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 105, 230, 443
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	64, 460, 605
BstSFI	CTRYAG	1 cut(s)	587
BstV1I	GCAGC	3 cut(s)	48, 446, 543
BstV2I	GAAGAC	1 cut(s)	138
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	4 cut(s)	14, 99, 224, 605
BtgI	CCRYGG	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	133, 685
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	3 cut(s)	366, 473, 519
Cac8I	GCNNGC	4 cut(s)	59, 417, 421, 561
CfoI	GCGC	2 cut(s)	233, 473
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	452
CviAII	CATG	4 cut(s)	74, 181, 397, 416
DdeI	CTNAG	2 cut(s)	137, 330
DpnI	GATC	2 cut(s)	385, 552
DpnII	GATC	2 cut(s)	383, 550
DriI	GACNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	219, 543
Eco81I	CCTNAGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	4 cut(s)	77, 184, 400, 419
FaqI	GGGAC	3 cut(s)	137, 386, 623
FatI	CATG	4 cut(s)	73, 180, 396, 415
FauI	CCCGC	1 cut(s)	471
FblI	GTMKAC	2 cut(s)	324, 491
Fnu4HI	GCNGC	3 cut(s)	62, 435, 557
FokI	GGATG	2 cut(s)	140, 672
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	3 cut(s)	62, 435, 557
FspBI	CTAG	3 cut(s)	206, 560, 564
GlaI	GCGC	2 cut(s)	232, 472
GluI	GCNGC	3 cut(s)	62, 435, 557
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	14, 99, 224, 605
HapII	CCGG	5 cut(s)	65, 461, 511, 528, 606
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	2 cut(s)	233, 473
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	77, 184, 400, 419
Hin6I	GCGC	2 cut(s)	231, 471
HinP1I	GCGC	2 cut(s)	231, 471
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	3 cut(s)	214, 307, 531
HpaII	CCGG	5 cut(s)	65, 461, 511, 528, 606
HphI	GGTGA	2 cut(s)	109, 586
Hpy166II	GTNNAC	5 cut(s)	279, 325, 403, 492, 616
Hpy188I	TCNGA	1 cut(s)	536
Hpy8I	GTNNAC	5 cut(s)	279, 325, 403, 492, 616
Hpy99I	CGWCG	2 cut(s)	191, 446
HpyAV	CCTTC	5 cut(s)	4, 130, 292, 512, 595
HpyCH4III	ACNGT	3 cut(s)	187, 394, 651
HpyCH4IV	ACGT	3 cut(s)	243, 291, 612
HpyCH4V	TGCA	6 cut(s)	57, 415, 434, 589, 595, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 105, 230, 443
HpyF3I	CTNAG	2 cut(s)	137, 330
HpySE526I	ACGT	3 cut(s)	243, 291, 612
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	77, 184, 400, 419
HspAI	GCGC	2 cut(s)	231, 471
Kzo9I	GATC	2 cut(s)	383, 550
LmnI	GCTCC	2 cut(s)	75, 588
Lsp1109I	GCAGC	3 cut(s)	48, 446, 543
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	3 cut(s)	206, 560, 564
MaeII	ACGT	3 cut(s)	243, 291, 612
MaeIII	GTNAC	2 cut(s)	361, 651
MalI	GATC	2 cut(s)	385, 552
MboI	GATC	2 cut(s)	383, 550
MboII	GAAGA	4 cut(s)	16, 143, 244, 589
MhlI	GDGCHC	2 cut(s)	72, 392
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	224
MnlI	CCTC	5 cut(s)	146, 165, 518, 539, 668
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	3 cut(s)	263, 467, 644
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	5 cut(s)	65, 461, 511, 528, 606
MspR9I	CCNGG	3 cut(s)	66, 462, 607
MwoI	GCNNNNNNNGC	4 cut(s)	67, 105, 230, 443
NciI	CCSGG	3 cut(s)	66, 462, 607
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	2 cut(s)	383, 550
NheI	GCTAGC	1 cut(s)	559
NlaIII	CATG	4 cut(s)	77, 184, 400, 419
NlaIV	GGNNCC	2 cut(s)	71, 515
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	419
PfeI	GAWTC	3 cut(s)	214, 307, 531
PkrI	GCNGC	3 cut(s)	63, 436, 558
Psp1406I	AACGTT	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	71, 515
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	591
PvuII	CAGCTG	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	263, 467, 644
SatI	GCNGC	3 cut(s)	62, 435, 557
Sau3AI	GATC	2 cut(s)	383, 550
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	66, 462, 607
SduI	GDGCHC	2 cut(s)	72, 392
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	2 cut(s)	166, 478
SspMI	CTAG	3 cut(s)	206, 560, 564
StyD4I	CCNGG	3 cut(s)	64, 460, 605
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	187, 394, 651
TaiI	ACGT	3 cut(s)	246, 294, 615
TaqI	TCGA	2 cut(s)	386, 544
TasI	AATT	1 cut(s)	144
TfiI	GAWTC	3 cut(s)	214, 307, 531
Tru1I	TTAA	3 cut(s)	263, 467, 644
Tru9I	TTAA	3 cut(s)	263, 467, 644
TscAI	CASTG	3 cut(s)	366, 480, 526
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	3 cut(s)	61, 434, 556
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	17, 144
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	3 cut(s)	366, 480, 526
XceI	RCATGY	1 cut(s)	419
XmiI	GTMKAC	2 cut(s)	324, 491
XspI	CTAG	3 cut(s)	206, 560, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.