transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 |
| prunus_persica | Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1 |
| pyrus_communis | pycom13g06290 pycom16g14440 |
| rosa_laevigata | RLG00000007107 |
| rosa_multiflora | Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009 |
| rosa_roxburghii | Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840 |
| rosa_samantha | Rh4AG287800 Rh4BG293800 Rh4CG309400 |
| rosa_wichuraiana | Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 296 |
| AciI | CCGC | 1 cut(s) | 197 |
| AcuI | CTGAAG | 1 cut(s) | 300 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AgsI | TTSAA | 2 cut(s) | 113, 304 |
| AhlI | ACTAGT | 1 cut(s) | 151 |
| AluBI | AGCT | 1 cut(s) | 162 |
| AluI | AGCT | 1 cut(s) | 162 |
| Alw26I | GTCTC | 1 cut(s) | 245 |
| AoxI | GGCC | 2 cut(s) | 29, 81 |
| AsuC2I | CCSGG | 1 cut(s) | 43 |
| BanI | GGYRCC | 1 cut(s) | 296 |
| BcnI | CCSGG | 1 cut(s) | 43 |
| BcoDI | GTCTC | 1 cut(s) | 245 |
| BcuI | ACTAGT | 1 cut(s) | 151 |
| BfaI | CTAG | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 298 |
| BmrFI | CCNGG | 1 cut(s) | 43 |
| BpuMI | CCSGG | 1 cut(s) | 43 |
| BsaJI | CCNNGG | 2 cut(s) | 42, 292 |
| Bse1I | ACTGG | 1 cut(s) | 264 |
| BseDI | CCNNGG | 2 cut(s) | 42, 292 |
| BseNI | ACTGG | 1 cut(s) | 264 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BshFI | GGCC | 2 cut(s) | 31, 83 |
| BshNI | GGYRCC | 1 cut(s) | 296 |
| BsiSI | CCGG | 1 cut(s) | 42 |
| BsmAI | GTCTC | 1 cut(s) | 245 |
| BsnI | GGCC | 2 cut(s) | 31, 83 |
| Bsp143I | GATC | 1 cut(s) | 216 |
| BspACI | CCGC | 1 cut(s) | 197 |
| BspANI | GGCC | 2 cut(s) | 31, 83 |
| BspLI | GGNNCC | 1 cut(s) | 298 |
| BspT107I | GGYRCC | 1 cut(s) | 296 |
| BsrI | ACTGG | 1 cut(s) | 264 |
| BssECI | CCNNGG | 2 cut(s) | 42, 292 |
| BssMI | GATC | 1 cut(s) | 216 |
| BssT1I | CCWWGG | 1 cut(s) | 292 |
| Bst4CI | ACNGT | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 1 cut(s) | 81 |
| BstKTI | GATC | 1 cut(s) | 219 |
| BstMAI | GTCTC | 1 cut(s) | 245 |
| BstMBI | GATC | 1 cut(s) | 216 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 196 |
| BstSCI | CCNGG | 1 cut(s) | 41 |
| BsuRI | GGCC | 2 cut(s) | 31, 83 |
| Cac8I | GCNNGC | 1 cut(s) | 81 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CviAII | CATG | 3 cut(s) | 5, 23, 244 |
| CviJI | RGCY | 6 cut(s) | 17, 31, 61, 83, 162, 278 |
| CviKI_1 | RGCY | 6 cut(s) | 17, 31, 61, 83, 162, 278 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DpnI | GATC | 1 cut(s) | 218 |
| DpnII | GATC | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 1 cut(s) | 292 |
| Eco57I | CTGAAG | 1 cut(s) | 300 |
| EcoT14I | CCWWGG | 1 cut(s) | 292 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 292 |
| FaeI | CATG | 3 cut(s) | 8, 26, 247 |
| FaiI | YATR | 5 cut(s) | 6, 24, 139, 224, 245 |
| FatI | CATG | 3 cut(s) | 4, 22, 243 |
| FauI | CCCGC | 1 cut(s) | 204 |
| FspBI | CTAG | 1 cut(s) | 152 |
| HaeIII | GGCC | 2 cut(s) | 31, 83 |
| HapII | CCGG | 1 cut(s) | 42 |
| Hin1II | CATG | 3 cut(s) | 8, 26, 247 |
| HindIII | AAGCTT | 1 cut(s) | 160 |
| HpaII | CCGG | 1 cut(s) | 42 |
| Hpy188I | TCNGA | 1 cut(s) | 70 |
| HpyAV | CCTTC | 2 cut(s) | 243, 260 |
| HpyCH4III | ACNGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 105, 179, 190 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 196 |
| Hsp92II | CATG | 3 cut(s) | 8, 26, 247 |
| Kzo9I | GATC | 1 cut(s) | 216 |
| LpnPI | CCDG | 5 cut(s) | 55, 65, 169, 212, 245 |
| MaeI | CTAG | 1 cut(s) | 152 |
| MalI | GATC | 1 cut(s) | 218 |
| MboI | GATC | 1 cut(s) | 216 |
| MluCI | AATT | 3 cut(s) | 90, 174, 191 |
| MnlI | CCTC | 5 cut(s) | 21, 40, 43, 49, 124 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MspI | CCGG | 1 cut(s) | 42 |
| MspR9I | CCNGG | 1 cut(s) | 43 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 196 |
| NciI | CCSGG | 1 cut(s) | 43 |
| NdeII | GATC | 1 cut(s) | 216 |
| NlaIII | CATG | 3 cut(s) | 8, 26, 247 |
| NlaIV | GGNNCC | 1 cut(s) | 298 |
| NmeAIII | GCCGAG | 1 cut(s) | 109 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PspN4I | GGNNCC | 1 cut(s) | 298 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| Sau3AI | GATC | 1 cut(s) | 216 |
| ScrFI | CCNGG | 1 cut(s) | 43 |
| SetI | ASST | 3 cut(s) | 111, 164, 231 |
| SpeI | ACTAGT | 1 cut(s) | 151 |
| Sse9I | AATT | 3 cut(s) | 90, 174, 191 |
| SsiI | CCGC | 1 cut(s) | 197 |
| SspMI | CTAG | 1 cut(s) | 152 |
| StyD4I | CCNGG | 1 cut(s) | 41 |
| StyI | CCWWGG | 1 cut(s) | 292 |
| TaaI | ACNGT | 1 cut(s) | 239 |
| TasI | AATT | 3 cut(s) | 90, 174, 191 |
| TspDTI | ATGAA | 2 cut(s) | 11, 21 |
| XspI | CTAG | 1 cut(s) | 152 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |