Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00361

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Forward (+)

17815 .. 18591

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGACAGGAAAGTTGCGTCAATATCAATCTGACGGTCAAGCTAATGAAGGCAGGGTGGCAGACAAAGTTGAAAGTAGAACCCCAGCAAAGGGCACAGAACCGATCATCAGAGAAATACTGGCCATCCATGGGCCCCCGTATACCGCTGTAGAGGAGGAAGTGCGTTTGAGATCAGAAACCCGCCAGGCGGAGAAGATACGTAGAGTATGCCAGATCACGGGCAGCCCCTCAGCGGGACAGAACGCGTTCCCCACGCCGGTCATTAGTTTCTCAGCATCCGATACAATCGGCATCAAGTTTCCCCATAGGGACGCCTTAATCATTTCTACTCAAATCGCGGACGCCCTTGTGCGGCGCGTAATGGTCGATGCTGGGAGCAGCGCAGACGTCATCTTTTGGGAAGCGTTTGAACAGCTCGGACTAGACAAGACGTTAATCCACCCCAGCAGAGCACCGCTGACGGCCTTTGAGGGTTCAGAAACATGGCCTGTGCGCGAGATTTCCCTACCAGTGACGACGGGAGGGAAAACCGTGGAGGCCTACAACGCCATTCTAGGCAGGGATTGGCTCCATAGGATGGGAGCTGAGGCTTCAACCAGATGTCAGGTACTCAAGTTTATTTTCGACAATGGCCAGCAGGTGATATCGGTTCGCGGCGATCAACTACTCTCTAAAAAGTTGTACGCCATGGAAATCAAGCGCTCTCCACCAACGCATAATGGCAAAGAGGATCCACTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.33

Weight (kDa)

8.52

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
AatII	GACGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	5 cut(s)	248, 341, 360, 498, 657
AciI	CCGC	8 cut(s)	147, 184, 191, 236, 341, 355, 458, 657
AclWI	GGATC	2 cut(s)	728, 741
AcoI	YGGCCR	2 cut(s)	123, 634
AcyI	GRCGYC	3 cut(s)	315, 345, 390
AfaI	GTAC	2 cut(s)	612, 686
AfeI	AGCGCT	1 cut(s)	704
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	74, 413, 597
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	44, 418, 587
AluI	AGCT	3 cut(s)	44, 418, 587
Alw21I	GWGCWC	1 cut(s)	457
AlwI	GGATC	2 cut(s)	728, 741
Aor51HI	AGCGCT	1 cut(s)	704
AoxI	GGCC	6 cut(s)	123, 134, 465, 488, 540, 634
ApaI	GGGCCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	225, 381
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	360, 386, 498, 705
AspS9I	GGNCC	2 cut(s)	134, 135
AsuHPI	GGTGA	1 cut(s)	655
BaeGI	GKGCMC	2 cut(s)	98, 138
BaeI	ACNNNNGTAYC	2 cut(s)	602, 635
BalI	TGGCCA	2 cut(s)	125, 636
BamHI	GGATCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	457
BbvCI	CCTCAGC	2 cut(s)	232, 588
BbvI	GCAGC	2 cut(s)	237, 393
BccI	CCATC	2 cut(s)	134, 574
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	188
BfaI	CTAG	3 cut(s)	425, 557, 740
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	4 cut(s)	226, 356, 382, 658
BlsI	GCNGC	4 cut(s)	227, 357, 383, 659
Bme1390I	CCNGG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	134, 135
BmiI	GGNNCC	4 cut(s)	136, 137, 572, 735
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	287, 303, 361
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	2 cut(s)	232, 588
BpuEI	CTTGAG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	3 cut(s)	315, 345, 390
BsaJI	CCNNGG	3 cut(s)	130, 534, 690
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	126, 512
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	130, 534, 690
BseGI	GGATG	3 cut(s)	126, 278, 585
BseMII	CTCAG	3 cut(s)	246, 288, 579
BseNI	ACTGG	2 cut(s)	126, 512
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	2 cut(s)	98, 138
BseXI	GCAGC	2 cut(s)	237, 393
BseYI	CCCAGC	3 cut(s)	85, 374, 446
Bsh1236I	CGCG	5 cut(s)	248, 341, 360, 498, 657
BshFI	GGCC	6 cut(s)	125, 136, 467, 490, 542, 636
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	2 cut(s)	252, 326
BsmFI	GGGAC	2 cut(s)	252, 326
BsnI	GGCC	6 cut(s)	125, 136, 467, 490, 542, 636
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	98, 138, 457
Bsp143I	GATC	5 cut(s)	105, 173, 216, 661, 733
Bsp19I	CCATGG	2 cut(s)	130, 690
BspACI	CCGC	8 cut(s)	147, 184, 191, 236, 341, 355, 458, 657
BspANI	GGCC	6 cut(s)	125, 136, 467, 490, 542, 636
BspCNI	CTCAG	3 cut(s)	245, 287, 580
BspFNI	CGCG	5 cut(s)	248, 341, 360, 498, 657
BspLI	GGNNCC	4 cut(s)	136, 137, 572, 735
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	728, 741
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	126, 512
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	130, 534, 690
BssMI	GATC	5 cut(s)	105, 173, 216, 661, 733
BssNAI	GTATAC	1 cut(s)	144
BssNI	GRCGYC	3 cut(s)	315, 345, 390
BssT1I	CCWWGG	2 cut(s)	130, 690
Bst1107I	GTATAC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	38, 535
BstACI	GRCGYC	3 cut(s)	315, 345, 390
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	3 cut(s)	232, 274, 588
BstDSI	CCRYGG	3 cut(s)	130, 534, 690
BstF5I	GGATG	3 cut(s)	126, 278, 585
BstFNI	CGCG	5 cut(s)	248, 341, 360, 498, 657
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	4 cut(s)	360, 386, 498, 705
BstKTI	GATC	5 cut(s)	108, 176, 219, 664, 736
BstMBI	GATC	5 cut(s)	105, 173, 216, 661, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	2 cut(s)	98, 138
BstSNI	TACGTA	1 cut(s)	203
BstUI	CGCG	5 cut(s)	248, 341, 360, 498, 657
BstV1I	GCAGC	2 cut(s)	237, 393
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BstZ17I	GTATAC	1 cut(s)	144
BsuRI	GGCC	6 cut(s)	125, 136, 467, 490, 542, 636
BtgI	CCRYGG	3 cut(s)	130, 534, 690
BtsCI	GGATG	3 cut(s)	126, 278, 585
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	638
CfoI	GCGC	4 cut(s)	360, 386, 498, 705
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	134, 135
CseI	GACGC	3 cut(s)	8, 323, 353
Csp6I	GTAC	2 cut(s)	611, 685
CviAII	CATG	3 cut(s)	131, 486, 691
CviQI	GTAC	2 cut(s)	611, 685
DdeI	CTNAG	3 cut(s)	232, 274, 588
DpnI	GATC	5 cut(s)	107, 175, 218, 663, 735
DpnII	GATC	5 cut(s)	105, 173, 216, 661, 733
EaeI	YGGCCR	2 cut(s)	123, 634
EciI	GGCGGA	1 cut(s)	206
Eco105I	TACGTA	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	130, 690
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	648
Eco47III	AGCGCT	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	648
EcoT14I	CCWWGG	2 cut(s)	130, 690
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	130, 690
FaeI	CATG	3 cut(s)	134, 489, 694
FaiI	YATR	9 cut(s)	132, 144, 211, 309, 487, 576, 692, 720, 745
FaqI	GGGAC	2 cut(s)	252, 326
FatI	CATG	3 cut(s)	130, 485, 690
FauI	CCCGC	2 cut(s)	191, 229
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	226, 356, 382, 658
FokI	GGATG	3 cut(s)	113, 265, 592
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	226, 356, 382, 658
FspBI	CTAG	3 cut(s)	425, 557, 740
GlaI	GCGC	4 cut(s)	359, 385, 497, 704
GluI	GCNGC	4 cut(s)	226, 356, 382, 658
GsaI	CCCAGC	3 cut(s)	89, 378, 450
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	6 cut(s)	125, 136, 467, 490, 542, 636
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	3 cut(s)	8, 323, 353
HhaI	GCGC	4 cut(s)	360, 386, 498, 705
Hin1I	GRCGYC	3 cut(s)	315, 345, 390
Hin1II	CATG	3 cut(s)	134, 489, 694
Hin6I	GCGC	4 cut(s)	358, 384, 496, 703
HinP1I	GCGC	4 cut(s)	358, 384, 496, 703
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	6 cut(s)	34, 113, 178, 283, 422, 481
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	38, 535
HpyCH4IV	ACGT	3 cut(s)	202, 390, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	3 cut(s)	232, 274, 588
HpySE526I	ACGT	3 cut(s)	202, 390, 434
Hsp92I	GRCGYC	3 cut(s)	315, 345, 390
Hsp92II	CATG	3 cut(s)	134, 489, 694
HspAI	GCGC	4 cut(s)	358, 384, 496, 703
Kzo9I	GATC	5 cut(s)	105, 173, 216, 661, 733
LmnI	GCTCC	3 cut(s)	378, 576, 584
Lsp1109I	GCAGC	2 cut(s)	237, 393
LweI	GCATC	3 cut(s)	287, 303, 361
MaeI	CTAG	3 cut(s)	425, 557, 740
MaeII	ACGT	3 cut(s)	202, 390, 434
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	107, 175, 218, 663, 735
MboI	GATC	5 cut(s)	105, 173, 216, 661, 733
MboII	GAAGA	2 cut(s)	16, 208
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	3 cut(s)	98, 138, 457
MlsI	TGGCCA	2 cut(s)	125, 636
MluI	ACGCGT	1 cut(s)	246
MluNI	TGGCCA	2 cut(s)	125, 636
MnlI	CCTC	8 cut(s)	148, 151, 241, 466, 518, 532, 583, 724
Mox20I	TGGCCA	2 cut(s)	125, 636
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	2 cut(s)	125, 636
MseI	TTAA	2 cut(s)	320, 437
Msp20I	TGGCCA	2 cut(s)	125, 636
MspA1I	CMGCKG	3 cut(s)	149, 236, 460
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	5 cut(s)	248, 341, 360, 498, 657
MwoI	GCNNNNNNNGC	1 cut(s)	548
NcoI	CCATGG	2 cut(s)	130, 690
NdeII	GATC	5 cut(s)	105, 173, 216, 661, 733
NlaIII	CATG	3 cut(s)	134, 489, 694
NlaIV	GGNNCC	4 cut(s)	136, 137, 572, 735
NmuCI	GTSAC	1 cut(s)	514
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	227, 357, 383, 659
Ppu21I	YACGTR	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	3 cut(s)	85, 374, 446
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	4 cut(s)	136, 137, 572, 735
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	134, 135
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	2 cut(s)	612, 686
RsaNI	GTAC	2 cut(s)	611, 685
SaqAI	TTAA	2 cut(s)	320, 437
SatI	GCNGC	4 cut(s)	226, 356, 382, 658
Sau3AI	GATC	5 cut(s)	105, 173, 216, 661, 733
Sau96I	GGNCC	2 cut(s)	134, 135
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	98, 138, 457
SetI	ASST	8 cut(s)	46, 205, 393, 420, 437, 589, 612, 645
SfaNI	GCATC	3 cut(s)	287, 303, 361
SfcI	CTRYAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SnaBI	TACGTA	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	8 cut(s)	147, 184, 191, 236, 341, 355, 458, 657
SspMI	CTAG	3 cut(s)	425, 557, 740
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	130, 690
TaaI	ACNGT	2 cut(s)	38, 535
TaiI	ACGT	3 cut(s)	205, 393, 437
TaqI	TCGA	2 cut(s)	369, 627
TauI	GCSGC	2 cut(s)	358, 660
Tru1I	TTAA	2 cut(s)	320, 437
Tru9I	TTAA	2 cut(s)	320, 437
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	2 cut(s)	225, 381
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	17, 63
TspRI	CASTG	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	3 cut(s)	425, 557, 740
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.