Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Forward (+)

44898757 .. 44899540

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G021060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAGGCAGGGAAGTTACGTCAATACCAATCTGACGGCCAGGCCGATGAAGGTAGGGCAACAGACAAGGTTGAAAGCAGAATCCCTACAAAAGGCACGGAACTGATCATCAGAGAAATATTGGCCATACATGGAGCCCCTTATACCGCTATGGAGGAGGAACTACGCTTGAGGTCGGAAACCCGCCAGGCAGAGAATATTCGTAGGGTATGCCAGATCGCGGTTTCTCCACGGCAGTCGGCAGATACCATTGGCATCCAGTTTCCCCACCGAGACGCCTTGGTCGTGTCTACCCAAATCGAGGATGCCCTCGTGCGAAGGAAAATGGTTGACGCCAGGAGCAGCGCCGAAGTCATATTCTGGGAGGCGTTTGAGCAGCTCGGATTAGACAAGACACTTATCCATCCCAGCAGAGCACCGTTGACGGCCTTTGAAGGTTCCGAAACATGGCCTGTGGGCGAGGTTTCATTACCAGTGACGACGGGAAGGAAATTTGTGGAGGTCGATTTCGTCATTGTCAAGAAGCCATCGGCCTACAACTCCATTCTAGGCTGGGATTGGCTCCATAGGATGGGAGCCGAGGCTTCGACTAGGTGTCAGGTACTCCAATTTATTTCCGACGATGGCCAGCAGGTGATATCGGTTCGTGGCGATCAGCTGCTCTCCAAGAAGTTGTATGGCATGGAAATCAAGCGCTCTCCGCCGCCTAATAAAGGCGAGGAGGGTTCATCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.35

Weight (kDa)

6.47

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
AasI	GACNNNNNNGTC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	622
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	1 cut(s)	221
AciI	CCGC	5 cut(s)	147, 184, 221, 701, 704
AcoI	YGGCCR	3 cut(s)	37, 123, 625
AcsI	RAATTY	1 cut(s)	491
AcyI	GRCGYC	2 cut(s)	276, 333
AfaI	GTAC	1 cut(s)	603
AfeI	AGCGCT	1 cut(s)	695
AfiI	CCNNNNNNNGG	6 cut(s)	92, 220, 301, 447, 571, 713
AgsI	TTSAA	2 cut(s)	74, 434
AhdI	GACNNNNNGTC	1 cut(s)	594
AjnI	CCWGG	3 cut(s)	39, 186, 335
AluBI	AGCT	2 cut(s)	379, 658
AluI	AGCT	2 cut(s)	379, 658
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	267
Aor51HI	AGCGCT	1 cut(s)	695
AoxI	GGCC	7 cut(s)	37, 42, 123, 426, 449, 531, 625
ApeKI	GCWGC	3 cut(s)	342, 376, 658
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	347, 696
AsuHPI	GGTGA	1 cut(s)	646
BalI	TGGCCA	2 cut(s)	125, 627
BanII	GRGCYC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	354, 388, 645
BccI	CCATC	4 cut(s)	411, 535, 565, 617
BceAI	ACGGC	3 cut(s)	52, 248, 441
BciT130I	CCWGG	3 cut(s)	41, 188, 337
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	2 cut(s)	548, 591
BfoI	RGCGCY	2 cut(s)	348, 697
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	4 cut(s)	343, 377, 659, 704
BlsI	GCNGC	4 cut(s)	344, 378, 660, 705
Bme1390I	CCNGG	3 cut(s)	41, 188, 337
BmeRI	GACNNNNNGTC	1 cut(s)	594
BmiI	GGNNCC	4 cut(s)	136, 439, 563, 577
BmrFI	CCNGG	3 cut(s)	41, 188, 337
BmsI	GCATC	2 cut(s)	264, 295
BpuEI	CTTGAG	1 cut(s)	190
BsaHI	GRCGYC	2 cut(s)	276, 333
BsaJI	CCNNGG	3 cut(s)	230, 279, 579
Bsc4I	CCNNNNNNNGG	6 cut(s)	92, 220, 301, 447, 571, 713
Bse1I	ACTGG	2 cut(s)	259, 473
BseBI	CCWGG	3 cut(s)	41, 188, 337
BseDI	CCNNGG	3 cut(s)	230, 279, 579
BseGI	GGATG	4 cut(s)	255, 310, 403, 576
BseLI	CCNNNNNNNGG	6 cut(s)	92, 220, 301, 447, 571, 713
BseNI	ACTGG	2 cut(s)	259, 473
BseRI	GAGGAG	2 cut(s)	170, 734
BseXI	GCAGC	3 cut(s)	354, 388, 645
BseYI	CCCAGC	2 cut(s)	407, 552
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	7 cut(s)	39, 44, 125, 428, 451, 533, 627
BsiHKAI	GWGCWC	1 cut(s)	418
BslI	CCNNNNNNNGG	6 cut(s)	92, 220, 301, 447, 571, 713
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsnI	GGCC	7 cut(s)	39, 44, 125, 428, 451, 533, 627
Bsp1286I	GDGCHC	2 cut(s)	139, 418
Bsp143I	GATC	3 cut(s)	105, 216, 652
BspACI	CCGC	5 cut(s)	147, 184, 221, 701, 704
BspANI	GGCC	7 cut(s)	39, 44, 125, 428, 451, 533, 627
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	136, 439, 563, 577
BspMI	ACCTGC	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	259, 473
BssECI	CCNNGG	3 cut(s)	230, 279, 579
BssMI	GATC	3 cut(s)	105, 216, 652
BssNI	GRCGYC	2 cut(s)	276, 333
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	3 cut(s)	41, 188, 337
Bst4CI	ACNGT	1 cut(s)	420
BstACI	GRCGYC	2 cut(s)	276, 333
BstC8I	GCNNGC	1 cut(s)	629
BstDSI	CCRYGG	1 cut(s)	230
BstENI	CCTNNNNNAGG	2 cut(s)	90, 711
BstF5I	GGATG	4 cut(s)	255, 310, 403, 576
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	2 cut(s)	348, 697
BstHHI	GCGC	2 cut(s)	347, 696
BstKTI	GATC	3 cut(s)	108, 219, 655
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	3 cut(s)	105, 216, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	3 cut(s)	41, 188, 337
BstSCI	CCNGG	3 cut(s)	39, 186, 335
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	354, 388, 645
BsuRI	GGCC	7 cut(s)	39, 44, 125, 428, 451, 533, 627
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	255, 310, 403, 576
BtsIMutI	CAGTG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	2 cut(s)	347, 696
CseI	GACGC	2 cut(s)	284, 341
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	3 cut(s)	131, 447, 682
CviQI	GTAC	1 cut(s)	602
DpnI	GATC	3 cut(s)	107, 218, 654
DpnII	GATC	3 cut(s)	105, 216, 652
DrdI	GACNNNNNNGTC	1 cut(s)	281
DriI	GACNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	3 cut(s)	37, 123, 625
Eam1105I	GACNNNNNGTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	639
Eco47III	AGCGCT	1 cut(s)	695
EcoNI	CCTNNNNNAGG	2 cut(s)	90, 711
EcoRII	CCWGG	3 cut(s)	39, 186, 335
EcoRV	GATATC	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	3 cut(s)	134, 450, 685
FatI	CATG	3 cut(s)	130, 446, 681
FauI	CCCGC	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	4 cut(s)	343, 377, 659, 704
FokI	GGATG	4 cut(s)	242, 317, 390, 583
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	4 cut(s)	343, 377, 659, 704
FspBI	CTAG	2 cut(s)	548, 591
GlaI	GCGC	2 cut(s)	346, 695
GluI	GCNGC	4 cut(s)	343, 377, 659, 704
GsaI	CCCAGC	2 cut(s)	411, 556
HaeII	RGCGCY	2 cut(s)	348, 697
HaeIII	GGCC	7 cut(s)	39, 44, 125, 428, 451, 533, 627
HgaI	GACGC	2 cut(s)	284, 341
HhaI	GCGC	2 cut(s)	347, 696
Hin1I	GRCGYC	2 cut(s)	276, 333
Hin1II	CATG	3 cut(s)	134, 450, 685
Hin6I	GCGC	2 cut(s)	345, 694
HinP1I	GCGC	2 cut(s)	345, 694
HincII	GTYRAC	2 cut(s)	331, 423
HindII	GTYRAC	2 cut(s)	331, 423
HinfI	GANTC	1 cut(s)	81
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	3 cut(s)	291, 331, 423
Hpy188I	TCNGA	6 cut(s)	34, 113, 178, 383, 442, 619
Hpy188III	TCNNGA	1 cut(s)	520
Hpy8I	GTNNAC	3 cut(s)	291, 331, 423
Hpy99I	CGWCG	2 cut(s)	484, 623
HpyAV	CCTTC	4 cut(s)	44, 312, 428, 480
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	2 cut(s)	276, 333
Hsp92II	CATG	3 cut(s)	134, 450, 685
HspAI	GCGC	2 cut(s)	345, 694
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	105, 216, 652
LmnI	GCTCC	4 cut(s)	134, 339, 567, 575
Lsp1109I	GCAGC	3 cut(s)	354, 388, 645
LweI	GCATC	2 cut(s)	264, 295
MaeI	CTAG	2 cut(s)	548, 591
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	15, 475
MalI	GATC	3 cut(s)	107, 218, 654
MboI	GATC	3 cut(s)	105, 216, 652
MhlI	GDGCHC	2 cut(s)	139, 418
MlsI	TGGCCA	2 cut(s)	125, 627
MluCI	AATT	2 cut(s)	491, 608
MluNI	TGGCCA	2 cut(s)	125, 627
MmeI	TCCRAC	2 cut(s)	156, 642
Mox20I	TGGCCA	2 cut(s)	125, 627
MscI	TGGCCA	2 cut(s)	125, 627
Msp20I	TGGCCA	2 cut(s)	125, 627
MspA1I	CMGCKG	1 cut(s)	658
MspR9I	CCNGG	3 cut(s)	41, 188, 337
MvaI	CCWGG	3 cut(s)	41, 188, 337
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	700
NdeII	GATC	3 cut(s)	105, 216, 652
NlaIII	CATG	3 cut(s)	134, 450, 685
NlaIV	GGNNCC	4 cut(s)	136, 439, 563, 577
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 282
PfeI	GAWTC	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	344, 378, 660, 705
Psp6I	CCWGG	3 cut(s)	39, 186, 335
PspFI	CCCAGC	2 cut(s)	407, 552
PspGI	CCWGG	3 cut(s)	39, 186, 335
PspN4I	GGNNCC	4 cut(s)	136, 439, 563, 577
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
SatI	GCNGC	4 cut(s)	343, 377, 659, 704
Sau3AI	GATC	3 cut(s)	105, 216, 652
ScrFI	CCNGG	3 cut(s)	41, 188, 337
SduI	GDGCHC	2 cut(s)	139, 418
SfaNI	GCATC	2 cut(s)	264, 295
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	491, 608
SsiI	CCGC	5 cut(s)	147, 184, 221, 701, 704
SspI	AATATT	2 cut(s)	120, 199
SspMI	CTAG	2 cut(s)	548, 591
StyD4I	CCNGG	3 cut(s)	39, 186, 335
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	3 cut(s)	300, 504, 587
TasI	AATT	2 cut(s)	491, 608
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	3 cut(s)	342, 376, 658
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	4 cut(s)	17, 63, 456, 717
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	480
Van91I	CCANNNNNTGG	1 cut(s)	571
XagI	CCTNNNNNAGG	2 cut(s)	90, 711
XapI	RAATTY	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	2 cut(s)	548, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.