Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Forward (+)

17868216 .. 17872637

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCCGACCGCAATATCCGCCGTGAGAGGTCCGCAAAACTCCCAAAAACTAGTTGGGAGCCTATTACCTTCTCGGAGGAGGAACAGCGCGGAGTACACCTACCCCACGACGACCCATTCTTGATCGACGCCATACTCGATAAAAGGTCGGTGGGAAGGGTCCTTGTTGACGGCGGCTCCGCCGTAAATGTCATCTTCAACGGTTGCTACGACAAACTTCGGCGAAATAGGAAACTACTACGGGATCGGGAGCCGTTGCTTAGCTTCTCCGATGATGTCACACGGCCGTTGGGTTCCGACTACATGCGACCGGTTATCGACACCGGTCCACGCTCGGCGGAAATCCACACAAAATTCATCATTGTGGACTACTTGAGTTCATATAATGCCATCATTGGTCGGCCGGCACTTAACAAGCTCAAGTGCATCATCGCCGGATACATGCTCCTCATGAAGTTCCCTACTCCCGACGGGACGGTGTGTGAAGGAAGTCAAACGGGGCACGCAAATGGTATTCAACAACCGTGTCGTGGTCGACGCGCGACCACGAGATCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3

Protein Analysis

186

Amino Acids

20.96

Weight (kDa)

9.44

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	3 cut(s)	90, 540, 542
AciI	CCGC	7 cut(s)	10, 19, 33, 90, 174, 180, 338
AclWI	GGATC	2 cut(s)	252, 546
AcoI	YGGCCR	2 cut(s)	284, 401
AcsI	RAATTY	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgeI	ACCGGT	2 cut(s)	310, 323
AgsI	TTSAA	2 cut(s)	199, 518
AhlI	ACTAGT	1 cut(s)	50
AluBI	AGCT	2 cut(s)	264, 418
AluI	AGCT	2 cut(s)	264, 418
AlwI	GGATC	2 cut(s)	252, 546
AoxI	GGCC	2 cut(s)	284, 401
ApoI	RAATTY	1 cut(s)	353
AsiGI	ACCGGT	2 cut(s)	310, 323
AspLEI	GCGC	2 cut(s)	90, 542
AspS9I	GGNCC	3 cut(s)	30, 160, 326
AvaII	GGWCC	3 cut(s)	30, 160, 326
BaeGI	GKGCMC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	547
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	6 cut(s)	6, 167, 187, 238, 271, 299
BciVI	GTATCC	1 cut(s)	431
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	1 cut(s)	175
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	176
Bme18I	GGWCC	3 cut(s)	30, 160, 326
BmgT120I	GGNCC	3 cut(s)	30, 160, 326
BmiI	GGNNCC	5 cut(s)	60, 161, 178, 252, 295
BmsI	GCATC	1 cut(s)	435
BoxI	GACNNNNGTC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	394, 404
BsaHI	GRCGYC	1 cut(s)	129
BsaWI	WCCGGW	2 cut(s)	310, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	3 cut(s)	310, 323, 403
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseRI	GAGGAG	2 cut(s)	92, 437
BseSI	GKGCMC	1 cut(s)	504
BseX3I	CGGCCG	2 cut(s)	284, 401
Bsh1236I	CGCG	3 cut(s)	90, 540, 542
Bsh1285I	CGRYCG	4 cut(s)	10, 287, 311, 404
BshFI	GGCC	2 cut(s)	286, 403
BshTI	ACCGGT	2 cut(s)	310, 323
BsiEI	CGRYCG	4 cut(s)	10, 287, 311, 404
BsiSI	CCGG	4 cut(s)	311, 324, 404, 435
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	286, 403
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	123, 244, 551
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	7 cut(s)	10, 19, 33, 90, 174, 180, 338
BspANI	GGCC	2 cut(s)	286, 403
BspFNI	CGCG	3 cut(s)	90, 540, 542
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	5 cut(s)	60, 161, 178, 252, 295
BspPI	GGATC	2 cut(s)	252, 546
BsrFI	RCCGGY	3 cut(s)	310, 323, 403
BssAI	RCCGGY	3 cut(s)	310, 323, 403
BssMI	GATC	3 cut(s)	123, 244, 551
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	547
Bst2BI	CACGAG	1 cut(s)	547
Bst4CI	ACNGT	3 cut(s)	203, 478, 525
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	405, 504
BstDEI	CTNAG	1 cut(s)	260
BstFNI	CGCG	3 cut(s)	90, 540, 542
BstHHI	GCGC	2 cut(s)	90, 542
BstKTI	GATC	3 cut(s)	126, 247, 554
BstMBI	GATC	3 cut(s)	123, 244, 551
BstMCI	CGRYCG	4 cut(s)	10, 287, 311, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNSI	RCATGY	2 cut(s)	307, 445
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	504
BstUI	CGCG	3 cut(s)	90, 540, 542
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BstZI	CGGCCG	2 cut(s)	284, 401
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	286, 403
BtgZI	GCGATG	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	405, 504
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	2 cut(s)	90, 542
Cfr10I	RCCGGY	3 cut(s)	310, 323, 403
Cfr13I	GGNCC	3 cut(s)	30, 160, 326
CseI	GACGC	2 cut(s)	137, 546
Csp6I	GTAC	1 cut(s)	95
CspAI	ACCGGT	2 cut(s)	310, 323
CviAII	CATG	3 cut(s)	304, 442, 451
CviJI	RGCY	7 cut(s)	61, 177, 253, 264, 286, 403, 418
CviKI_1	RGCY	7 cut(s)	61, 177, 253, 264, 286, 403, 418
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	125, 246, 553
DpnII	GATC	3 cut(s)	123, 244, 551
EaeI	YGGCCR	2 cut(s)	284, 401
EagI	CGGCCG	2 cut(s)	284, 401
EciI	GGCGGA	3 cut(s)	8, 169, 353
EclXI	CGGCCG	2 cut(s)	284, 401
Eco47I	GGWCC	3 cut(s)	30, 160, 326
Eco52I	CGGCCG	2 cut(s)	284, 401
EcoO109I	RGGNCCY	1 cut(s)	160
FaeI	CATG	3 cut(s)	307, 445, 454
FaiI	YATR	7 cut(s)	134, 305, 382, 384, 443, 452, 559
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	3 cut(s)	303, 441, 450
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	2 cut(s)	89, 541
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	286, 403
HapII	CCGG	4 cut(s)	311, 324, 404, 435
HgaI	GACGC	2 cut(s)	137, 546
HhaI	GCGC	2 cut(s)	90, 542
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	307, 445, 454
Hin6I	GCGC	2 cut(s)	88, 540
HinP1I	GCGC	2 cut(s)	88, 540
HincII	GTYRAC	2 cut(s)	169, 536
HindII	GTYRAC	2 cut(s)	169, 536
HpaII	CCGG	4 cut(s)	311, 324, 404, 435
Hpy166II	GTNNAC	5 cut(s)	97, 169, 329, 367, 536
Hpy188I	TCNGA	3 cut(s)	76, 271, 298
Hpy188III	TCNNGA	4 cut(s)	121, 248, 451, 467
Hpy8I	GTNNAC	5 cut(s)	97, 169, 329, 367, 536
Hpy99I	CGWCG	4 cut(s)	113, 131, 473, 540
HpyAV	CCTTC	3 cut(s)	79, 150, 479
HpyCH4III	ACNGT	3 cut(s)	203, 478, 525
HpyCH4V	TGCA	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	307, 445, 454
HspAI	GCGC	2 cut(s)	88, 540
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	123, 244, 551
LmnI	GCTCC	4 cut(s)	58, 182, 250, 450
LpnPI	CCDG	4 cut(s)	324, 337, 417, 448
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	125, 246, 553
MboI	GATC	3 cut(s)	123, 244, 551
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	4 cut(s)	21, 70, 73, 458
MroNI	GCCGGC	1 cut(s)	403
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	362, 507
MspI	CCGG	4 cut(s)	311, 324, 404, 435
MvnI	CGCG	3 cut(s)	90, 540, 542
MwoI	GCNNNNNNNGC	1 cut(s)	18
NaeI	GCCGGC	1 cut(s)	405
NdeII	GATC	3 cut(s)	123, 244, 551
NgoMIV	GCCGGC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	307, 445, 454
NlaIV	GGNNCC	5 cut(s)	60, 161, 178, 252, 295
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	2 cut(s)	307, 445
PagI	TCATGA	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 207
PdiI	GCCGGC	1 cut(s)	405
PinAI	ACCGGT	2 cut(s)	310, 323
PkrI	GCNGC	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	5 cut(s)	60, 161, 178, 252, 295
PspPI	GGNCC	3 cut(s)	30, 160, 326
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	362, 507
SalI	GTCGAC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	3 cut(s)	123, 244, 551
Sau96I	GGNCC	3 cut(s)	30, 160, 326
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	6 cut(s)	32, 71, 102, 149, 266, 420
SfaNI	GCATC	1 cut(s)	435
SinI	GGWCC	3 cut(s)	30, 160, 326
SmiMI	CAYNNNNRTG	2 cut(s)	362, 507
SmlI	CTYRAG	2 cut(s)	373, 419
SmoI	CTYRAG	2 cut(s)	373, 419
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	7 cut(s)	10, 19, 33, 90, 174, 180, 338
SspMI	CTAG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	203, 478, 525
TaqI	TCGA	4 cut(s)	126, 138, 318, 535
TasI	AATT	1 cut(s)	353
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	346, 369, 467
VpaK11BI	GGWCC	3 cut(s)	30, 160, 326
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	2 cut(s)	307, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.