Rh4CG309400

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006403
Physical Location & Seq
Reverse (-)
57125478 .. 57125795
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG309400.1

Sequence Viewer

Length: 318 bp
ATGTCACATGCTAGTGATAGGCCCCGATTCCGTACATTCATGGTGGAATTTGTGGTGATGGACAAGCCTTCAGCATATGACATCATTTTTGGAATGAAAGGGTTAGCTGAGATGGGGGCAGTAATCTCTGCAGGATATCATCTACTCATCCGCTTCAGGACTGAAGCTGGAATTGGAGACGTCAGAGGAAGTCAACAGATAGCTAGAGACTGTGAGAAGGCTATCTTGGAAGAAGCAAGGCTCAAGGACCCTTCAATCAAAAAGGTGGCAGTGGTTATGAAGTTGCACAGCAGAAAGACTCCTTGGTTTGGACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

9.66

Isoelectric Point (pI)

25.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AciI CCGC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 3 cut(s) 54, 139, 183
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 255
AjuI GAANNNNNNNTTGG 6 cut(s) 156, 188, 209, 241, 286, 318
AluBI AGCT 3 cut(s) 107, 167, 203
AluI AGCT 3 cut(s) 107, 167, 203
Alw26I GTCTC 2 cut(s) 171, 201
AoxI GGCC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspS9I GGNCC 3 cut(s) 21, 247, 311
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 2 cut(s) 247, 311
BccI CCATC 2 cut(s) 52, 106
BcoDI GTCTC 2 cut(s) 171, 201
BfaI CTAG 3 cut(s) 12, 204, 316
BfmI CTRYAG 1 cut(s) 129
Bme18I GGWCC 2 cut(s) 247, 311
BmgT120I GGNCC 3 cut(s) 21, 247, 311
BmiI GGNNCC 3 cut(s) 23, 249, 313
BpuEI CTTGAG 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 171, 201
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 22
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 3 cut(s) 23, 249, 313
BspMAI CTGCAG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 302
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 147
BstMAI GTCTC 2 cut(s) 171, 201
BstNSI RCATGY 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cfr13I GGNCC 3 cut(s) 21, 247, 311
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 8, 40
CviJI RGCY 7 cut(s) 22, 67, 107, 167, 203, 221, 241
CviKI_1 RGCY 7 cut(s) 22, 67, 107, 167, 203, 221, 241
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 302
Eco32I GATATC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 247, 311
Eco57I CTGAAG 3 cut(s) 54, 139, 183
EcoO109I RGGNCCY 2 cut(s) 21, 247
EcoRV GATATC 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 2 cut(s) 11, 43
FaiI YATR 5 cut(s) 9, 41, 76, 78, 278
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 2 cut(s) 7, 39
FauNDI CATATG 1 cut(s) 76
FokI GGATG 1 cut(s) 134
FspBI CTAG 3 cut(s) 12, 204, 316
HaeIII GGCC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 11, 43
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HinfI GANTC 2 cut(s) 27, 298
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 78, 211, 261
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 131, 286
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 11, 43
LpnPI CCDG 3 cut(s) 117, 142, 153
MaeI CTAG 3 cut(s) 12, 204, 316
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 1 cut(s) 242
MluCI AATT 2 cut(s) 47, 171
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 12
NdeI CATATG 1 cut(s) 76
NlaIII CATG 2 cut(s) 11, 43
NlaIV GGNNCC 3 cut(s) 23, 249, 313
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 11
PfeI GAWTC 1 cut(s) 27
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 23, 249, 313
PspPI GGNCC 3 cut(s) 21, 247, 311
PspPPI RGGWCCY 1 cut(s) 247
PstI CTGCAG 1 cut(s) 133
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 12
Sau96I GGNCC 3 cut(s) 21, 247, 311
SchI GAGTC 1 cut(s) 292
SetI ASST 5 cut(s) 109, 169, 183, 205, 267
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 2 cut(s) 247, 311
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 47, 171
SsiI CCGC 1 cut(s) 151
SspMI CTAG 3 cut(s) 12, 204, 316
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 183
TasI AATT 2 cut(s) 47, 171
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 28, 110, 293
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 2 cut(s) 247, 311
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 11
XspI CTAG 3 cut(s) 12, 204, 316
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.