FvH4_4g22761

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006403
Physical Location & Seq
Reverse (-)
25462264 .. 25464019
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22761.t4

Sequence Viewer

Length: 546 bp
ATGTCTGTCTCTCGCAATGACATAGAGTTTTTGGATAAGGACTTGATTGGACTTGAAGTCCCGCACAACGATGCACTTGTTGTGAGCATGATGGTGGCTAACACTAAGCTGGACAAGATTTTCTGTACCACAGGCTTCTCCCACAGTATCATTTACCTTTCCACTCTTGAGCGATTGGGGATCAGCAAGAAAGATATTAGCCCCCAGAAAGAGACTCTGAGGGGCAACTTGGGGGAAGAACTCAAGTCAGTGGGAAAAATAACTCTCAATGTCACAGCTGGTGAAAGGCCCCGATTTCGTACACTCGTGGTGGATTTTTTGGTGATGGACACCCCTTCAGTATATGACATCATTTTTGGGGCAAAAGGGTTAGCTGATATGAGGGCAATAGCCTCAACATACCATCTAGTCATCCGCTTCTGGACCGAAGCTGGAGTTGGAGAGGTCAGAGGAAGTCAGAAGATAGCTAGAGAATGTGAGAAGGCTCTCTTGGAAGAAGCAAGGCGCAAGGACCCTTCAATCAAAAAGGTGGCAGTGGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

182

Amino Acids

20.14

Weight (kDa)

8.52

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 62, 415
AclWI GGATC 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 2 cut(s) 127, 301
AgsI TTSAA 2 cut(s) 56, 519
AhdI GACNNNNNGTC 1 cut(s) 56
AjuI GAANNNNNNNTTGG 4 cut(s) 420, 452, 473, 505
AluBI AGCT 5 cut(s) 109, 278, 374, 431, 467
AluI AGCT 5 cut(s) 109, 278, 374, 431, 467
Alw26I GTCTC 2 cut(s) 13, 206
AlwI GGATC 1 cut(s) 188
AoxI GGCC 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 3 cut(s) 288, 423, 511
AsuHPI GGTGA 2 cut(s) 293, 334
AvaII GGWCC 2 cut(s) 423, 511
BauI CACGAG 1 cut(s) 305
BccI CCATC 3 cut(s) 85, 319, 411
BcoDI GTCTC 2 cut(s) 13, 206
BfaI CTAG 2 cut(s) 407, 468
Bme18I GGWCC 2 cut(s) 423, 511
BmeRI GACNNNNNGTC 1 cut(s) 56
BmgT120I GGNCC 3 cut(s) 288, 423, 511
BmiI GGNNCC 2 cut(s) 290, 513
BmsI GCATC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 188, 227
Bse3DI GCAATG 1 cut(s) 22
BseGI GGATG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 209
BshFI GGCC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 13, 206
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 62, 415
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 290, 513
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 22
BssMI GATC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 105, 218
BstF5I GGATG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 13, 206
BstMBI GATC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 2 cut(s) 255, 540
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 3 cut(s) 288, 423, 511
Csp6I GTAC 2 cut(s) 126, 300
CviAII CATG 1 cut(s) 88
CviQI GTAC 2 cut(s) 126, 300
DdeI CTNAG 2 cut(s) 105, 218
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DriI GACNNNNNGTC 1 cut(s) 56
Eam1105I GACNNNNNGTC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 423, 511
Eco57I CTGAAG 1 cut(s) 321
EcoO109I RGGNCCY 2 cut(s) 288, 511
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 23, 89, 343, 345, 380, 400, 542
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 69
FokI GGATG 1 cut(s) 398
FspBI CTAG 2 cut(s) 407, 468
GlaI GCGC 1 cut(s) 506
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 1 cut(s) 289
HhaI GCGC 1 cut(s) 507
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HinfI GANTC 1 cut(s) 214
HphI GGTGA 2 cut(s) 293, 334
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 3 cut(s) 219, 449, 459
Hpy188III TCNNGA 2 cut(s) 167, 421
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 345, 475, 525
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 105, 218
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 505
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 95, 117, 218, 264, 406, 417
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 407, 468
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 3 cut(s) 248, 472, 506
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 213, 375, 403, 436, 443
MslI CAYNNNNRTG 2 cut(s) 69, 92
MspA1I CMGCKG 1 cut(s) 278
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 290, 513
NmuCI GTSAC 1 cut(s) 271
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 290, 513
PspPI GGNCC 3 cut(s) 288, 423, 511
PspPPI RGGWCCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 2 cut(s) 127, 301
RsaNI GTAC 2 cut(s) 126, 300
RseI CAYNNNNRTG 2 cut(s) 69, 92
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 3 cut(s) 288, 423, 511
SchI GAGTC 1 cut(s) 208
SetI ASST 8 cut(s) 111, 159, 280, 376, 433, 447, 469, 531
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 2 cut(s) 423, 511
SmiMI CAYNNNNRTG 2 cut(s) 69, 92
SmlI CTYRAG 2 cut(s) 167, 242
SmoI CTYRAG 2 cut(s) 167, 242
SsiI CCGC 2 cut(s) 62, 415
SspMI CTAG 2 cut(s) 407, 468
TaaI ACNGT 1 cut(s) 146
TaqII GACCGA 1 cut(s) 440
TscAI CASTG 2 cut(s) 255, 540
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspRI CASTG 2 cut(s) 255, 540
VpaK11BI GGWCC 2 cut(s) 423, 511
XspI CTAG 2 cut(s) 407, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.