Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Reverse (-)

29293699 .. 29294475

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAGACAGGGAAGTTGCATCAGTATCAATCTGACGGTCAGGCTGATGAAGGCAGGGTGGCAGACAAGGTTGAAAGTAGAACCCCAGCAAAAGGCATAGAACCGATCATCAGAGAAATACTGGCCATCCATAGAGCCCCAAATACCGCTGTAAAGGAGGAAGTGCGTTTGAGATCAGAAACCCGCCAGGGGAAGAAGATACGTAGATTATGCCAGATCACGGGCAGCCCCTCAGCGGGACAGAGCTCATTCACCACGCCGGTCATTAGTTTCTCTACATCCGATACAATCGGCATCCAGTTTCCCCATCAGGACGCCTTAATCATCTCTACTCAAATCGCAGACGCCCTTGTGCGGTGGGTAATGGTCGATGCTGGGAGCAGCGCATACGTCATATTTTGGGAAGCGTTTGAACAACTCAGACTAGACAAGACGTTAATCCACCCCAGCAGAGCGCCGCTGACGACCTTTGAGGGTTCGGAAACATGGCCTATGGGCGAGATTTCCCTACCAGTGACGACGGGAGGGAAAACCGTGGAGGTCAACTTCGTCATTGTCAAGAAGCAGTCGGCCTACAACGCCATTCTAGGCAGGGATTGGCTCAATAGGATGGGAGCTGAGGCTTCAACCAGATGTCAGGTACTCAAGTTTATTTCCGACAATGGCCAGCAAGTGATATCGGTTCGCGGCGATCAACTACTCTCTAAAAAGTTGTATGCCATGGAGATCAAGCGTTCTCCGCCAACGCATAAGGGAAAAGAGGATCCATCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.53

Weight (kDa)

9.32

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	687
AciI	CCGC	7 cut(s)	147, 184, 236, 355, 458, 687, 740
AclWI	GGATC	2 cut(s)	758, 771
AcoI	YGGCCR	2 cut(s)	123, 664
AcyI	GRCGYC	2 cut(s)	315, 345
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	6 cut(s)	92, 189, 220, 235, 236, 354
AgsI	TTSAA	3 cut(s)	74, 413, 627
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	246, 617
AluI	AGCT	2 cut(s)	246, 617
Alw21I	GWGCWC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	758, 771
AoxI	GGCC	4 cut(s)	123, 488, 570, 664
ApeKI	GCWGC	2 cut(s)	225, 381
AspLEI	GCGC	2 cut(s)	386, 457
AsuHPI	GGTGA	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	632, 665
BalI	TGGCCA	2 cut(s)	125, 666
BamHI	GGATCC	1 cut(s)	763
BanII	GRGCYC	2 cut(s)	139, 248
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	248
BbvCI	CCTCAGC	2 cut(s)	232, 618
BbvI	GCAGC	2 cut(s)	237, 393
BccI	CCATC	4 cut(s)	134, 315, 604, 775
BciT130I	CCWGG	1 cut(s)	188
BfaI	CTAG	2 cut(s)	425, 587
BfoI	RGCGCY	1 cut(s)	458
BisI	GCNGC	4 cut(s)	226, 382, 458, 688
BlsI	GCNGC	4 cut(s)	227, 383, 459, 689
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	28, 303, 361
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	2 cut(s)	232, 618
BpuEI	CTTGAG	1 cut(s)	629
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	315, 345
BsaJI	CCNNGG	3 cut(s)	187, 534, 720
Bsc4I	CCNNNNNNNGG	6 cut(s)	92, 189, 220, 235, 236, 354
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	126, 298, 512
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	187, 534, 720
BseGI	GGATG	4 cut(s)	126, 278, 294, 615
BseLI	CCNNNNNNNGG	6 cut(s)	92, 189, 220, 235, 236, 354
BseMII	CTCAG	3 cut(s)	246, 433, 609
BseNI	ACTGG	3 cut(s)	126, 298, 512
BseXI	GCAGC	2 cut(s)	237, 393
BseYI	CCCAGC	3 cut(s)	85, 374, 446
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	4 cut(s)	125, 490, 572, 666
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	6 cut(s)	92, 189, 220, 235, 236, 354
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	4 cut(s)	125, 490, 572, 666
Bsp1286I	GDGCHC	2 cut(s)	139, 248
Bsp143I	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	7 cut(s)	147, 184, 236, 355, 458, 687, 740
BspANI	GGCC	4 cut(s)	125, 490, 572, 666
BspCNI	CTCAG	3 cut(s)	245, 432, 610
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	1 cut(s)	765
BspPI	GGATC	2 cut(s)	758, 771
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	3 cut(s)	126, 298, 512
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	187, 534, 720
BssMI	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
BssNI	GRCGYC	2 cut(s)	315, 345
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	38, 535
BstACI	GRCGYC	2 cut(s)	315, 345
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	3 cut(s)	232, 419, 618
BstDSI	CCRYGG	2 cut(s)	534, 720
BstF5I	GGATG	4 cut(s)	126, 278, 294, 615
BstFNI	CGCG	1 cut(s)	687
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	2 cut(s)	386, 457
BstKTI	GATC	6 cut(s)	108, 176, 219, 694, 729, 766
BstMBI	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	578, 739
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	203
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	2 cut(s)	237, 393
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	4 cut(s)	125, 490, 572, 666
BtgI	CCRYGG	2 cut(s)	534, 720
BtsCI	GGATG	4 cut(s)	126, 278, 294, 615
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	668
CfoI	GCGC	2 cut(s)	386, 457
Cfr10I	RCCGGY	1 cut(s)	259
CseI	GACGC	2 cut(s)	323, 353
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	2 cut(s)	486, 721
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	3 cut(s)	232, 419, 618
DpnI	GATC	6 cut(s)	107, 175, 218, 693, 728, 765
DpnII	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
EaeI	YGGCCR	2 cut(s)	123, 664
EciI	GGCGGA	1 cut(s)	729
Ecl136II	GAGCTC	1 cut(s)	246
Eco105I	TACGTA	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	2 cut(s)	139, 248
Eco32I	GATATC	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	678
EcoT14I	CCWWGG	1 cut(s)	720
EcoT38I	GRGCYC	2 cut(s)	139, 248
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	2 cut(s)	489, 724
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	2 cut(s)	485, 720
FauI	CCCGC	2 cut(s)	191, 229
Fnu4HI	GCNGC	4 cut(s)	226, 382, 458, 688
FokI	GGATG	4 cut(s)	113, 265, 281, 622
FriOI	GRGCYC	2 cut(s)	139, 248
Fsp4HI	GCNGC	4 cut(s)	226, 382, 458, 688
FspBI	CTAG	2 cut(s)	425, 587
GlaI	GCGC	2 cut(s)	385, 456
GluI	GCNGC	4 cut(s)	226, 382, 458, 688
GsaI	CCCAGC	3 cut(s)	89, 378, 450
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	4 cut(s)	125, 490, 572, 666
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	2 cut(s)	323, 353
HhaI	GCGC	2 cut(s)	386, 457
Hin1I	GRCGYC	2 cut(s)	315, 345
Hin1II	CATG	2 cut(s)	489, 724
Hin6I	GCGC	2 cut(s)	384, 455
HinP1I	GCGC	2 cut(s)	384, 455
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	7 cut(s)	34, 113, 178, 283, 422, 481, 658
Hpy188III	TCNNGA	2 cut(s)	311, 559
Hpy8I	GTNNAC	1 cut(s)	544
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	38, 535
HpyCH4IV	ACGT	3 cut(s)	202, 390, 434
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	2 cut(s)	578, 739
HpyF3I	CTNAG	3 cut(s)	232, 419, 618
HpySE526I	ACGT	3 cut(s)	202, 390, 434
Hsp92I	GRCGYC	2 cut(s)	315, 345
Hsp92II	CATG	2 cut(s)	489, 724
HspAI	GCGC	2 cut(s)	384, 455
Kzo9I	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
LmnI	GCTCC	2 cut(s)	378, 614
Lsp1109I	GCAGC	2 cut(s)	237, 393
LweI	GCATC	3 cut(s)	28, 303, 361
MaeI	CTAG	2 cut(s)	425, 587
MaeII	ACGT	3 cut(s)	202, 390, 434
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	6 cut(s)	107, 175, 218, 693, 728, 765
MboI	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
MboII	GAAGA	3 cut(s)	16, 205, 208
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	2 cut(s)	139, 248
MlsI	TGGCCA	2 cut(s)	125, 666
MluNI	TGGCCA	2 cut(s)	125, 666
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	7 cut(s)	151, 241, 466, 518, 532, 613, 754
Mox20I	TGGCCA	2 cut(s)	125, 666
MscI	TGGCCA	2 cut(s)	125, 666
MseI	TTAA	2 cut(s)	320, 437
Msp20I	TGGCCA	2 cut(s)	125, 666
MspA1I	CMGCKG	3 cut(s)	149, 236, 460
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	2 cut(s)	578, 739
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
NlaIII	CATG	2 cut(s)	489, 724
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	514
PkrI	GCNGC	4 cut(s)	227, 383, 459, 689
Ppu21I	YACGTR	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	3 cut(s)	85, 374, 446
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	765
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	320, 437
SatI	GCNGC	4 cut(s)	226, 382, 458, 688
Sau3AI	GATC	6 cut(s)	105, 173, 216, 691, 726, 763
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	139, 248
SetI	ASST	9 cut(s)	72, 205, 248, 393, 437, 470, 543, 619, 642
SfaNI	GCATC	3 cut(s)	28, 303, 361
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SnaBI	TACGTA	1 cut(s)	203
SsiI	CCGC	7 cut(s)	147, 184, 236, 355, 458, 687, 740
SspMI	CTAG	2 cut(s)	425, 587
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	38, 535
TaiI	ACGT	3 cut(s)	205, 393, 437
TaqI	TCGA	1 cut(s)	369
TauI	GCSGC	2 cut(s)	460, 690
Tru1I	TTAA	2 cut(s)	320, 437
Tru9I	TTAA	2 cut(s)	320, 437
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	2 cut(s)	225, 381
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	17, 63
TspRI	CASTG	1 cut(s)	519
XspI	CTAG	2 cut(s)	425, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.