Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Forward (+)

41439323 .. 41440099

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAGGCAGGGAAGTTGCGTGAATACCAATCCAACAGCCATGCCGATGGAGAAAGGGGAGCGGACAAGGTTGAAAGTAGAATCCCAGCGAAAGGCACAGAACCGATCATCAGAGAAATATTGGCCATACATGGAGCCCCTTATACCGCTGTGGAGGAGGAAGTGCGCTTAAGGTCGGAAACTCGCCAAGCAGAAAAGATTCGTCGAGTATGCCAGATCTCGGATAGCCCCTTGGTGGGGCAGAACTCGGCCCCCACATCGGTAATTAGTTTCTCCGCGGCAGACACAGTTGGCATCCAGTTTCCCCACCGGGATGCCTTGGTGGTGTCCACCCAAATCGCGGACGCCCTCGTGCGACGGATAATGGTTGACGCCGGGAGCAGCGCCGATGTCATATTCTGGGAAGCATTTGAACAGCTCGGATTAGACAAGACACTCATCCATCCCAGCAGAGCCCCGTTGACGGCCTTTGAAGGTTCTGAAATCTGGCCTGTGGGCGAGATTTCATTACCAGTGACGACAGGAGGGAAAACCGTGGAGGTCGATTTCGTCATTGTCAAAAGGCCATCGGCCTACAACGCCATCCTAGGCAGGGATTGGCTCCATAGGATGGGAGCTGAGGCTTCAACTAGGTGTCAGGTACTCAAGTTTATTTCCGATGACGGCCAGCAGGTGATATCGGTTCGAGGCGATCAACTGCTCTCCAAGAAGTTGTATGCCATGGAAATCAAACGCTCTCCGCCGCCAAATAAGGGTGAGGAGGGTCCATCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.17

Weight (kDa)

6.25

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	2 cut(s)	278, 341
AciI	CCGC	7 cut(s)	62, 147, 276, 278, 341, 740, 743
AcoI	YGGCCR	2 cut(s)	123, 664
AcyI	GRCGYC	2 cut(s)	345, 372
AfaI	GTAC	1 cut(s)	642
AflII	CTTAAG	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	74, 413, 473, 627
AluBI	AGCT	2 cut(s)	418, 617
AluI	AGCT	2 cut(s)	418, 617
AoxI	GGCC	7 cut(s)	123, 249, 465, 488, 563, 570, 664
ApeKI	GCWGC	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	198
AspA2I	CCTAGG	1 cut(s)	586
AspLEI	GCGC	2 cut(s)	168, 386
AspS9I	GGNCC	2 cut(s)	250, 764
AsuC2I	CCSGG	2 cut(s)	311, 376
AsuHPI	GGTGA	2 cut(s)	685, 767
AvaII	GGWCC	1 cut(s)	764
AvrII	CCTAGG	1 cut(s)	586
BaeI	ACNNNNGTAYC	2 cut(s)	632, 665
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	139, 457
BauI	CACGAG	1 cut(s)	350
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	6 cut(s)	41, 450, 574, 590, 604, 775
BceAI	ACGGC	2 cut(s)	480, 679
BcnI	CCSGG	2 cut(s)	311, 376
BfaI	CTAG	2 cut(s)	587, 630
BfoI	RGCGCY	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	3 cut(s)	279, 382, 743
BlnI	CCTAGG	1 cut(s)	586
BlsI	GCNGC	3 cut(s)	280, 383, 744
Bme1390I	CCNGG	2 cut(s)	311, 376
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	2 cut(s)	250, 764
BmiI	GGNNCC	4 cut(s)	136, 252, 602, 765
BmrFI	CCNGG	2 cut(s)	311, 376
BmsI	GCATC	2 cut(s)	303, 304
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	629
BpuMI	CCSGG	2 cut(s)	311, 376
BsaHI	GRCGYC	2 cut(s)	345, 372
BsaJI	CCNNGG	6 cut(s)	231, 276, 318, 534, 586, 720
Bse1I	ACTGG	2 cut(s)	298, 512
BseDI	CCNNGG	6 cut(s)	231, 276, 318, 534, 586, 720
BseGI	GGATG	6 cut(s)	294, 319, 438, 442, 582, 615
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	2 cut(s)	298, 512
BseRI	GAGGAG	2 cut(s)	170, 773
BseXI	GCAGC	1 cut(s)	393
BseYI	CCCAGC	2 cut(s)	85, 446
Bsh1236I	CGCG	2 cut(s)	278, 341
BshFI	GGCC	7 cut(s)	125, 251, 467, 490, 565, 572, 666
BsiSI	CCGG	2 cut(s)	310, 375
BsnI	GGCC	7 cut(s)	125, 251, 467, 490, 565, 572, 666
Bsp1286I	GDGCHC	2 cut(s)	139, 457
Bsp143I	GATC	3 cut(s)	105, 216, 691
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	7 cut(s)	62, 147, 276, 278, 341, 740, 743
BspANI	GGCC	7 cut(s)	125, 251, 467, 490, 565, 572, 666
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	2 cut(s)	278, 341
BspLI	GGNNCC	4 cut(s)	136, 252, 602, 765
BspMI	ACCTGC	1 cut(s)	661
BspTI	CTTAAG	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	298, 512
BssECI	CCNNGG	6 cut(s)	231, 276, 318, 534, 586, 720
BssMI	GATC	3 cut(s)	105, 216, 691
BssNI	GRCGYC	2 cut(s)	345, 372
BssSI	CACGAG	1 cut(s)	350
BssT1I	CCWWGG	4 cut(s)	231, 318, 586, 720
Bst2BI	CACGAG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	289, 535
BstACI	GRCGYC	2 cut(s)	345, 372
BstAFI	CTTAAG	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	3 cut(s)	276, 534, 720
BstF5I	GGATG	6 cut(s)	294, 319, 438, 442, 582, 615
BstFNI	CGCG	2 cut(s)	278, 341
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	2 cut(s)	168, 386
BstKTI	GATC	3 cut(s)	108, 219, 694
BstMBI	GATC	3 cut(s)	105, 216, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	309, 374
BstUI	CGCG	2 cut(s)	278, 341
BstV1I	GCAGC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	7 cut(s)	125, 251, 467, 490, 565, 572, 666
BtgI	CCRYGG	3 cut(s)	276, 534, 720
BtsCI	GGATG	6 cut(s)	294, 319, 438, 442, 582, 615
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	668
CfoI	GCGC	2 cut(s)	168, 386
Cfr13I	GGNCC	2 cut(s)	250, 764
Cfr42I	CCGCGG	1 cut(s)	279
CseI	GACGC	2 cut(s)	353, 380
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	3 cut(s)	41, 131, 721
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	107, 218, 693
DpnII	GATC	3 cut(s)	105, 216, 691
EaeI	YGGCCR	2 cut(s)	123, 664
EciI	GGCGGA	1 cut(s)	729
Eco130I	CCWWGG	4 cut(s)	231, 318, 586, 720
Eco24I	GRGCYC	2 cut(s)	139, 457
Eco32I	GATATC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	764
EcoRV	GATATC	1 cut(s)	678
EcoT14I	CCWWGG	4 cut(s)	231, 318, 586, 720
EcoT38I	GRGCYC	2 cut(s)	139, 457
ErhI	CCWWGG	4 cut(s)	231, 318, 586, 720
FaeI	CATG	3 cut(s)	44, 134, 724
FatI	CATG	3 cut(s)	40, 130, 720
Fnu4HI	GCNGC	3 cut(s)	279, 382, 743
FokI	GGATG	6 cut(s)	281, 326, 425, 429, 569, 622
FriOI	GRGCYC	2 cut(s)	139, 457
Fsp4HI	GCNGC	3 cut(s)	279, 382, 743
FspBI	CTAG	2 cut(s)	587, 630
GlaI	GCGC	2 cut(s)	167, 385
GluI	GCNGC	3 cut(s)	279, 382, 743
GsaI	CCCAGC	2 cut(s)	89, 450
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	7 cut(s)	125, 251, 467, 490, 565, 572, 666
HapII	CCGG	2 cut(s)	310, 375
HgaI	GACGC	2 cut(s)	353, 380
HhaI	GCGC	2 cut(s)	168, 386
Hin1I	GRCGYC	2 cut(s)	345, 372
Hin1II	CATG	3 cut(s)	44, 134, 724
Hin6I	GCGC	2 cut(s)	166, 384
HinP1I	GCGC	2 cut(s)	166, 384
HincII	GTYRAC	2 cut(s)	370, 462
HindII	GTYRAC	2 cut(s)	370, 462
HinfI	GANTC	2 cut(s)	81, 199
HpaII	CCGG	2 cut(s)	310, 375
HphI	GGTGA	2 cut(s)	685, 767
Hpy166II	GTNNAC	3 cut(s)	330, 370, 462
Hpy188I	TCNGA	6 cut(s)	113, 178, 223, 422, 481, 658
Hpy8I	GTNNAC	3 cut(s)	330, 370, 462
Hpy99I	CGWCG	2 cut(s)	207, 360
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	289, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	1 cut(s)	618
Hsp92I	GRCGYC	2 cut(s)	345, 372
Hsp92II	CATG	3 cut(s)	44, 134, 724
HspAI	GCGC	2 cut(s)	166, 384
KspI	CCGCGG	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	105, 216, 691
LmnI	GCTCC	5 cut(s)	59, 134, 378, 606, 614
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	2 cut(s)	303, 304
MaeI	CTAG	2 cut(s)	587, 630
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	107, 218, 693
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	3 cut(s)	105, 216, 691
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	139, 457
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	264
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	57, 156
MnlI	CCTC	9 cut(s)	148, 151, 359, 518, 532, 613, 680, 751, 754
Mox20I	TGGCCA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	2 cut(s)	45, 312
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	149, 278
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	2 cut(s)	310, 375
MspR9I	CCNGG	2 cut(s)	311, 376
MvnI	CGCG	2 cut(s)	278, 341
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	2 cut(s)	311, 376
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	3 cut(s)	105, 216, 691
NlaIII	CATG	3 cut(s)	44, 134, 724
NlaIV	GGNNCC	4 cut(s)	136, 252, 602, 765
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	514
PaqCI	CACCTGC	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	81, 199
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	280, 383, 744
PspFI	CCCAGC	2 cut(s)	85, 446
PspN4I	GGNNCC	4 cut(s)	136, 252, 602, 765
PspPI	GGNCC	2 cut(s)	250, 764
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
RseI	CAYNNNNRTG	2 cut(s)	45, 312
SacII	CCGCGG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	3 cut(s)	279, 382, 743
Sau3AI	GATC	3 cut(s)	105, 216, 691
Sau96I	GGNCC	2 cut(s)	250, 764
ScrFI	CCNGG	2 cut(s)	311, 376
SduI	GDGCHC	2 cut(s)	139, 457
SetI	ASST	9 cut(s)	72, 176, 420, 478, 543, 619, 635, 642, 675
SfaNI	GCATC	2 cut(s)	303, 304
Sfr303I	CCGCGG	1 cut(s)	279
SgrBI	CCGCGG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	2 cut(s)	45, 312
SmlI	CTYRAG	2 cut(s)	169, 644
SmoI	CTYRAG	2 cut(s)	169, 644
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	7 cut(s)	62, 147, 276, 278, 341, 740, 743
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	2 cut(s)	587, 630
StyD4I	CCNGG	2 cut(s)	309, 374
StyI	CCWWGG	4 cut(s)	231, 318, 586, 720
TaaI	ACNGT	2 cut(s)	289, 535
TaqI	TCGA	3 cut(s)	205, 543, 685
TasI	AATT	1 cut(s)	264
TauI	GCSGC	2 cut(s)	281, 745
TfiI	GAWTC	2 cut(s)	81, 199
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	17, 495
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	610
Vha464I	CTTAAG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	764
XmaJI	CCTAGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	587, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.