Rw7G015580

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006403
Physical Location & Seq
Reverse (-)
15722490 .. 15723266
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015580.1

Sequence Viewer

Length: 777 bp
ATGAAGGCAGGAAAGTTACGCGAATACCAGTCCAACGGCCATGCCGATGGAGGTAGGGCAGCAGACAAGGTTGAAAGCAGAATCCCAACAAAAGGCACGGAACCGATCATCAGAGAAATATTGGCCATACATGGAGCCCCTTATACCGCTGTAGAGGAGGAAGTGCACTTGAGGTCGGAAACCCGCCAAGCAGAAAAGATTCGTCGAGTTTGCCAGATCACGGATAGCCCCTTGGCGGGGCAGAGCTCGGCCCCCACATCGGTAATTAGTTTCTCCGCGGCAGATACCATTGGCATCCAATTTCCCCACCGGGATGCCTTGGTGGTATCCACCCAAATAGCGGACGCCCTCGTGCGGCGGATAATGGTCGACGCTGGGAGCAGCGCCGATGTCATATTCTGGGAAGCATTTGAGCAGCTCGGATTAGACAAGACACTTATCCATCCCAGCAGAGCCCCGTTGACGGCCTTTGAAGGTTCCGAAATATGGCATGTGGGCGAGATTTCATTATCGGTAACGACGGGAGGGAAAACTGTGGAGGTCGATTTAGTCATTGTCAAGAGGCCATCGGCCTACAATGCCATCCTAGTCCGGGATTGGCTCCATAGGATGGGAGCCGAGGCTTCAACTAGGTGTCAGGTACTCAAGTTTATTTCAGATGACGGCCAGCAGGTGATATCGGTTCGAGGCGATCAACTGCTCTCCAAGAAGTTGTATGCCATGGAAATCAAGCGCTCTCCGCCGCCAAATAAGGGTGCGGAGGATCCATCGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.11

Weight (kDa)

6.4

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 661
Acc36I ACCTGC 1 cut(s) 661
AccB7I CCANNNNNTGG 1 cut(s) 610
AccI GTMKAC 1 cut(s) 369
AccII CGCG 2 cut(s) 21, 278
AclWI GGATC 2 cut(s) 758, 771
AcoI YGGCCR 3 cut(s) 37, 123, 664
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 1 cut(s) 642
AfeI AGCGCT 1 cut(s) 734
AgsI TTSAA 3 cut(s) 74, 473, 627
AluBI AGCT 2 cut(s) 246, 418
AluI AGCT 2 cut(s) 246, 418
Alw21I GWGCWC 2 cut(s) 168, 248
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 2 cut(s) 758, 771
Aor51HI AGCGCT 1 cut(s) 734
AoxI GGCC 7 cut(s) 37, 123, 249, 465, 563, 570, 664
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 3 cut(s) 59, 381, 415
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 2 cut(s) 386, 735
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 2 cut(s) 311, 593
AsuHPI GGTGA 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 632, 665
BalI TGGCCA 1 cut(s) 125
BamHI GGATCC 1 cut(s) 763
BanII GRGCYC 3 cut(s) 139, 248, 457
BauI CACGAG 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 168, 248
BbvI GCAGC 3 cut(s) 71, 393, 427
BccI CCATC 6 cut(s) 41, 450, 574, 590, 604, 775
BceAI ACGGC 3 cut(s) 52, 480, 679
BciVI GTATCC 1 cut(s) 337
BcnI CCSGG 2 cut(s) 311, 593
BfaI CTAG 2 cut(s) 587, 630
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 2 cut(s) 387, 736
BfuAI ACCTGC 1 cut(s) 661
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 6 cut(s) 60, 279, 356, 382, 416, 743
BlsI GCNGC 6 cut(s) 61, 280, 357, 383, 417, 744
Bme1390I CCNGG 2 cut(s) 311, 593
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 7 cut(s) 102, 136, 252, 478, 602, 616, 765
BmrFI CCNGG 2 cut(s) 311, 593
BmsI GCATC 2 cut(s) 303, 304
BpuEI CTTGAG 2 cut(s) 190, 629
BpuMI CCSGG 2 cut(s) 311, 593
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 5 cut(s) 231, 276, 318, 618, 720
Bse1I ACTGG 1 cut(s) 28
BseDI CCNNGG 5 cut(s) 231, 276, 318, 618, 720
BseGI GGATG 5 cut(s) 294, 319, 442, 582, 615
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 3 cut(s) 71, 393, 427
BseYI CCCAGC 2 cut(s) 374, 446
Bsh1236I CGCG 2 cut(s) 21, 278
BshFI GGCC 7 cut(s) 39, 125, 251, 467, 565, 572, 666
BsiHKAI GWGCWC 2 cut(s) 168, 248
BsiSI CCGG 2 cut(s) 310, 592
BsnI GGCC 7 cut(s) 39, 125, 251, 467, 565, 572, 666
Bsp1286I GDGCHC 4 cut(s) 139, 168, 248, 457
Bsp143I GATC 4 cut(s) 105, 216, 691, 763
Bsp19I CCATGG 1 cut(s) 720
BspANI GGCC 7 cut(s) 39, 125, 251, 467, 565, 572, 666
BspFNI CGCG 2 cut(s) 21, 278
BspLI GGNNCC 7 cut(s) 102, 136, 252, 478, 602, 616, 765
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 2 cut(s) 758, 771
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 5 cut(s) 231, 276, 318, 618, 720
BssMI GATC 4 cut(s) 105, 216, 691, 763
BssNI GRCGYC 1 cut(s) 345
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 3 cut(s) 231, 318, 720
Bst2BI CACGAG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 535
BstACI GRCGYC 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 668
BstDSI CCRYGG 2 cut(s) 276, 720
BstF5I GGATG 5 cut(s) 294, 319, 442, 582, 615
BstFNI CGCG 2 cut(s) 21, 278
BstH2I RGCGCY 2 cut(s) 387, 736
BstHHI GCGC 2 cut(s) 386, 735
BstKTI GATC 4 cut(s) 108, 219, 694, 766
BstMBI GATC 4 cut(s) 105, 216, 691, 763
BstMWI GCNNNNNNNGC 2 cut(s) 578, 739
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 309, 591
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 2 cut(s) 21, 278
BstV1I GCAGC 3 cut(s) 71, 393, 427
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 763
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 7 cut(s) 39, 125, 251, 467, 565, 572, 666
BtgI CCRYGG 2 cut(s) 276, 720
BtsCI GGATG 5 cut(s) 294, 319, 442, 582, 615
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 668
CfoI GCGC 2 cut(s) 386, 735
Cfr13I GGNCC 1 cut(s) 250
Cfr42I CCGCGG 1 cut(s) 279
CseI GACGC 2 cut(s) 353, 380
Csp6I GTAC 1 cut(s) 641
CviAII CATG 4 cut(s) 41, 131, 491, 721
CviQI GTAC 1 cut(s) 641
DpnI GATC 4 cut(s) 107, 218, 693, 765
DpnII GATC 4 cut(s) 105, 216, 691, 763
EaeI YGGCCR 3 cut(s) 37, 123, 664
EciI GGCGGA 2 cut(s) 373, 729
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 3 cut(s) 231, 318, 720
Eco24I GRGCYC 3 cut(s) 139, 248, 457
Eco32I GATATC 1 cut(s) 678
Eco47III AGCGCT 1 cut(s) 734
Eco53kI GAGCTC 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 246
EcoRV GATATC 1 cut(s) 678
EcoT14I CCWWGG 3 cut(s) 231, 318, 720
EcoT38I GRGCYC 3 cut(s) 139, 248, 457
ErhI CCWWGG 3 cut(s) 231, 318, 720
FaeI CATG 4 cut(s) 44, 134, 494, 724
FatI CATG 4 cut(s) 40, 130, 490, 720
FauI CCCGC 2 cut(s) 191, 229
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 6 cut(s) 60, 279, 356, 382, 416, 743
FokI GGATG 5 cut(s) 281, 326, 429, 569, 622
FriOI GRGCYC 3 cut(s) 139, 248, 457
Fsp4HI GCNGC 6 cut(s) 60, 279, 356, 382, 416, 743
FspBI CTAG 2 cut(s) 587, 630
GlaI GCGC 2 cut(s) 385, 734
GluI GCNGC 6 cut(s) 60, 279, 356, 382, 416, 743
GsaI CCCAGC 2 cut(s) 378, 450
HaeII RGCGCY 2 cut(s) 387, 736
HaeIII GGCC 7 cut(s) 39, 125, 251, 467, 565, 572, 666
HapII CCGG 2 cut(s) 310, 592
HgaI GACGC 2 cut(s) 353, 380
HhaI GCGC 2 cut(s) 386, 735
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 4 cut(s) 44, 134, 494, 724
Hin6I GCGC 2 cut(s) 384, 733
HinP1I GCGC 2 cut(s) 384, 733
HincII GTYRAC 2 cut(s) 370, 462
HindII GTYRAC 2 cut(s) 370, 462
HinfI GANTC 2 cut(s) 81, 199
HpaII CCGG 2 cut(s) 310, 592
HphI GGTGA 1 cut(s) 685
Hpy166II GTNNAC 3 cut(s) 166, 370, 462
Hpy188I TCNGA 5 cut(s) 113, 178, 422, 481, 658
Hpy188III TCNNGA 1 cut(s) 559
Hpy8I GTNNAC 3 cut(s) 166, 370, 462
Hpy99I CGWCG 3 cut(s) 207, 374, 523
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 578, 739
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 4 cut(s) 44, 134, 494, 724
HspAI GCGC 2 cut(s) 384, 733
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 4 cut(s) 105, 216, 691, 763
LmnI GCTCC 4 cut(s) 134, 378, 606, 614
Lsp1109I GCAGC 3 cut(s) 71, 393, 427
LweI GCATC 2 cut(s) 303, 304
MaeI CTAG 2 cut(s) 587, 630
MaeIII GTNAC 2 cut(s) 15, 514
MalI GATC 4 cut(s) 107, 218, 693, 765
MboI GATC 4 cut(s) 105, 216, 691, 763
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 4 cut(s) 139, 168, 248, 457
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 2 cut(s) 264, 299
MluNI TGGCCA 1 cut(s) 125
MmeI TCCRAC 2 cut(s) 57, 156
Mox20I TGGCCA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 198
MscI TGGCCA 1 cut(s) 125
MslI CAYNNNNRTG 2 cut(s) 45, 312
Msp20I TGGCCA 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 149, 278
MspI CCGG 2 cut(s) 310, 592
MspR9I CCNGG 2 cut(s) 311, 593
MvnI CGCG 2 cut(s) 21, 278
MwoI GCNNNNNNNGC 2 cut(s) 578, 739
NciI CCSGG 2 cut(s) 311, 593
NcoI CCATGG 1 cut(s) 720
NdeII GATC 4 cut(s) 105, 216, 691, 763
NlaIII CATG 4 cut(s) 44, 134, 494, 724
NlaIV GGNNCC 7 cut(s) 102, 136, 252, 478, 602, 616, 765
NmeAIII GCCGAG 2 cut(s) 227, 643
NspI RCATGY 1 cut(s) 494
PaqCI CACCTGC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 81, 199
PflMI CCANNNNNTGG 1 cut(s) 610
PfoI TCCNGGA 1 cut(s) 591
PkrI GCNGC 6 cut(s) 61, 280, 357, 383, 417, 744
Psp124BI GAGCTC 1 cut(s) 248
PspFI CCCAGC 2 cut(s) 374, 446
PspN4I GGNNCC 7 cut(s) 102, 136, 252, 478, 602, 616, 765
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 2 cut(s) 45, 312
SacI GAGCTC 1 cut(s) 248
SacII CCGCGG 1 cut(s) 279
SalI GTCGAC 1 cut(s) 368
SatI GCNGC 6 cut(s) 60, 279, 356, 382, 416, 743
Sau3AI GATC 4 cut(s) 105, 216, 691, 763
Sau96I GGNCC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 311, 593
SduI GDGCHC 4 cut(s) 139, 168, 248, 457
SfaNI GCATC 2 cut(s) 303, 304
SfcI CTRYAG 1 cut(s) 150
Sfr303I CCGCGG 1 cut(s) 279
SgrBI CCGCGG 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 45, 312
SmlI CTYRAG 2 cut(s) 169, 644
SmoI CTYRAG 2 cut(s) 169, 644
Sse9I AATT 2 cut(s) 264, 299
SspI AATATT 1 cut(s) 120
SspMI CTAG 2 cut(s) 587, 630
SstI GAGCTC 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 309, 591
StyI CCWWGG 3 cut(s) 231, 318, 720
TaaI ACNGT 1 cut(s) 535
TaqI TCGA 4 cut(s) 205, 369, 543, 685
TasI AATT 2 cut(s) 264, 299
TauI GCSGC 3 cut(s) 281, 358, 745
TfiI GAWTC 2 cut(s) 81, 199
TseI GCWGC 3 cut(s) 59, 381, 415
TspDTI ATGAA 2 cut(s) 17, 495
TspGWI ACGGA 2 cut(s) 113, 236
Van91I CCANNNNNTGG 1 cut(s) 610
VneI GTGCAC 1 cut(s) 164
XceI RCATGY 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 2 cut(s) 587, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.