Rroxscaffold_3G00251940

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006403
Physical Location & Seq
Forward (+)
45926659 .. 45928258
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251940.1

Sequence Viewer

Length: 696 bp
ATGGTGGGAGTGGAAGGTTTCAATTCGGATCCACCCGACGAGACCGGATCTGGTGGATGGCAACACGACCAAAATACAAACATTCTCGAAAAAATGAAAAAGATGAAGGAGGAACTCGCTCAACGCAAAAGAAGGAGGAGCTCCGAGAGGCCGCGGGGACAAATCCCGAATGGCCGAGGCTTTCAAGAGAGGCAGTCCAAATTCACAATTTCTCCGGGGGCAATCCCGCTCGCACACAAGCACGTGGGTGTATTCACCAAGCCGCCACCCATGATGATAGACCGAGCGAAGCGGGATCAATCACAATACCGCGAGTTCCACGAGGAATACTCACACACTACCAATAATTTCCGGCAGCCGAGACAACAAATCAAGGATCTAATGAAGCAAGGCAAGCTCCTCCAATACAAAATCCGAATGGAGAAAGAAACGGCCCAGCCGCACCAACCAACCCAACTCCCCCCCCCCAAGAATGGACCAATACGTGAAATCTTGGCTATTCACAAAAGGCCACTTTCCTCTCGGGAGGAGGAAACAAGGTTAAGATCAGAAATTAGGCAAGCCGAGAAAATCGGGAGAGTGTGCAAAGTTGAAAAAGGAGTAAATATGGAGGCATTACGGTACAATGAACCGGTGGTAAGCTTCTCCGTGGAAGTACTATGCATGATGACAATGCAACTAAAAGCACGGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.86

Weight (kDa)

10.0

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 2 cut(s) 154, 312
AciI CCGC 7 cut(s) 152, 154, 227, 263, 292, 310, 440
AclWI GGATC 5 cut(s) 23, 36, 55, 303, 384
AcoI YGGCCR 2 cut(s) 172, 689
AcsI RAATTY 1 cut(s) 200
AcvI CACGTG 1 cut(s) 244
AfaI GTAC 2 cut(s) 623, 657
AfiI CCNNNNNNNGG 1 cut(s) 473
AgeI ACCGGT 1 cut(s) 631
AgsI TTSAA 3 cut(s) 22, 185, 593
AleI CACNNNNGTG 2 cut(s) 246, 691
AluBI AGCT 3 cut(s) 141, 397, 642
AluI AGCT 3 cut(s) 141, 397, 642
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 35, 355
AlwI GGATC 5 cut(s) 23, 36, 55, 303, 384
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 5 cut(s) 149, 172, 432, 509, 689
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 631
AspS9I GGNCC 2 cut(s) 433, 476
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 1 cut(s) 476
BamHI GGATCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 143
BauI CACGAG 1 cut(s) 320
BbrPI CACGTG 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 51
BceAI ACGGC 2 cut(s) 447, 676
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 35, 355
BisI GCNGC 4 cut(s) 152, 263, 356, 440
BlsI GCNGC 4 cut(s) 153, 264, 357, 441
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 433, 476
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpuMI CCSGG 1 cut(s) 216
BsaAI YACGTR 2 cut(s) 244, 485
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 4 cut(s) 152, 175, 215, 648
BsaWI WCCGGW 2 cut(s) 44, 631
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse118I RCCGGY 1 cut(s) 631
BseDI CCNNGG 4 cut(s) 152, 175, 215, 648
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 473
BseRI GAGGAG 3 cut(s) 151, 389, 542
BseX3I CGGCCG 1 cut(s) 689
BseXI GCAGC 1 cut(s) 367
BseYI CCCAGC 1 cut(s) 435
Bsh1236I CGCG 2 cut(s) 154, 312
Bsh1285I CGRYCG 1 cut(s) 692
BshFI GGCC 5 cut(s) 151, 174, 434, 511, 691
BshTI ACCGGT 1 cut(s) 631
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 4 cut(s) 45, 215, 352, 632
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 2 cut(s) 35, 355
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 5 cut(s) 151, 174, 434, 511, 691
Bso31I GGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 5 cut(s) 28, 47, 295, 376, 545
BspACI CCGC 7 cut(s) 152, 154, 227, 263, 292, 310, 440
BspANI GGCC 5 cut(s) 151, 174, 434, 511, 691
BspFNI CGCG 2 cut(s) 154, 312
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 5 cut(s) 23, 36, 55, 303, 384
BspTNI GGTCTC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 631
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 4 cut(s) 152, 175, 215, 648
BssMI GATC 5 cut(s) 28, 47, 295, 376, 545
BssSI CACGAG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 621
BstBAI YACGTR 2 cut(s) 244, 485
BstC8I GCNNGC 3 cut(s) 231, 395, 561
BstDSI CCRYGG 2 cut(s) 152, 648
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 2 cut(s) 154, 312
BstKTI GATC 5 cut(s) 31, 50, 298, 379, 548
BstMAI GTCTC 2 cut(s) 35, 355
BstMBI GATC 5 cut(s) 28, 47, 295, 376, 545
BstMCI CGRYCG 1 cut(s) 692
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 214
BstUI CGCG 2 cut(s) 154, 312
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 3 cut(s) 28, 47, 376
BstYI RGATCY 3 cut(s) 28, 47, 376
BstZI CGGCCG 1 cut(s) 689
BsuRI GGCC 5 cut(s) 151, 174, 434, 511, 691
BtgI CCRYGG 2 cut(s) 152, 648
BtsCI GGATG 1 cut(s) 62
Cac8I GCNNGC 3 cut(s) 231, 395, 561
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 2 cut(s) 433, 476
Cfr42I CCGCGG 1 cut(s) 155
Csp6I GTAC 2 cut(s) 622, 656
CspAI ACCGGT 1 cut(s) 631
CviAII CATG 2 cut(s) 271, 664
CviQI GTAC 2 cut(s) 622, 656
DpnI GATC 5 cut(s) 30, 49, 297, 378, 547
DpnII GATC 5 cut(s) 28, 47, 295, 376, 545
EaeI YGGCCR 2 cut(s) 172, 689
EagI CGGCCG 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 689
Eco24I GRGCYC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 476
Eco52I CGGCCG 1 cut(s) 689
Eco53kI GAGCTC 1 cut(s) 141
Eco72I CACGTG 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 665
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 2 cut(s) 274, 667
FaiI YATR 4 cut(s) 272, 608, 661, 665
FaqI GGGAC 1 cut(s) 171
FatI CATG 2 cut(s) 270, 663
FauI CCCGC 3 cut(s) 147, 234, 285
Fnu4HI GCNGC 4 cut(s) 152, 263, 356, 440
FokI GGATG 1 cut(s) 69
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 4 cut(s) 152, 263, 356, 440
GluI GCNGC 4 cut(s) 152, 263, 356, 440
GsaI CCCAGC 1 cut(s) 439
HaeIII GGCC 5 cut(s) 151, 174, 434, 511, 691
HapII CCGG 4 cut(s) 45, 215, 352, 632
Hin1II CATG 2 cut(s) 274, 667
HindIII AAGCTT 1 cut(s) 640
HpaII CCGG 4 cut(s) 45, 215, 352, 632
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 4 cut(s) 28, 145, 416, 550
Hpy188III TCNNGA 5 cut(s) 86, 166, 185, 524, 574
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 8, 100, 126
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 2 cut(s) 243, 484
HpyCH4V TGCA 3 cut(s) 585, 663, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpySE526I ACGT 2 cut(s) 243, 484
Hsp92II CATG 2 cut(s) 274, 667
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 5 cut(s) 28, 47, 295, 376, 545
LmnI GCTCC 3 cut(s) 138, 146, 402
LpnPI CCDG 6 cut(s) 36, 58, 228, 365, 449, 645
Lsp1109I GCAGC 1 cut(s) 367
MaeII ACGT 2 cut(s) 243, 484
MalI GATC 5 cut(s) 30, 49, 297, 378, 547
MbiI CCGCTC 1 cut(s) 229
MboI GATC 5 cut(s) 28, 47, 295, 376, 545
MflI RGATCY 3 cut(s) 28, 47, 376
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 5 cut(s) 22, 200, 207, 346, 552
Mph1103I ATGCAT 1 cut(s) 665
MseI TTAA 1 cut(s) 542
MslI CAYNNNNRTG 2 cut(s) 246, 691
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 4 cut(s) 45, 215, 352, 632
MspR9I CCNGG 1 cut(s) 216
MvnI CGCG 2 cut(s) 154, 312
MwoI GCNNNNNNNGC 1 cut(s) 394
NciI CCSGG 1 cut(s) 216
NdeII GATC 5 cut(s) 28, 47, 295, 376, 545
NlaIII CATG 2 cut(s) 274, 667
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 3 cut(s) 200, 384, 589
NsiI ATGCAT 1 cut(s) 665
OliI CACNNNNGTG 2 cut(s) 246, 691
PinAI ACCGGT 1 cut(s) 631
PkrI GCNGC 4 cut(s) 153, 264, 357, 441
PmaCI CACGTG 1 cut(s) 244
PmlI CACGTG 1 cut(s) 244
Ppu21I YACGTR 2 cut(s) 244, 485
Psp124BI GAGCTC 1 cut(s) 143
PspCI CACGTG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 433, 476
PsuI RGATCY 3 cut(s) 28, 47, 376
RsaI GTAC 2 cut(s) 623, 657
RsaNI GTAC 2 cut(s) 622, 656
RseI CAYNNNNRTG 2 cut(s) 246, 691
SacI GAGCTC 1 cut(s) 143
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 4 cut(s) 152, 263, 356, 440
Sau3AI GATC 5 cut(s) 28, 47, 295, 376, 545
Sau96I GGNCC 2 cut(s) 433, 476
ScaI AGTACT 1 cut(s) 657
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 19, 143, 246, 399, 487, 542, 644
Sfr303I CCGCGG 1 cut(s) 155
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 2 cut(s) 246, 691
Sse9I AATT 5 cut(s) 22, 200, 207, 346, 552
SsiI CCGC 7 cut(s) 152, 154, 227, 263, 292, 310, 440
SstI GAGCTC 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 2 cut(s) 246, 487
TaqI TCGA 1 cut(s) 87
TaqII GACCGA 1 cut(s) 297
TasI AATT 5 cut(s) 22, 200, 207, 346, 552
TatI WGTACW 1 cut(s) 655
TauI GCSGC 3 cut(s) 154, 265, 442
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 4 cut(s) 110, 119, 398, 642
TspGWI ACGGA 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.