Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000588.1

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Reverse (-)

30628 .. 31101

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000588.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgatgatagacccaacgaagggagatcaatcaaggtactgcgagttctatgagagatactcgcacactaccaataattgccagcacttgagacaacaaatcgaggatctgatgaagcaaggaaagctcctccaatacaaaatccaaagcggagaaagagacagcccggccgcgctgaacaacccagctccccccaagaatggaccattacgtgaaatcttggctattcatggaaggccactttcctctggggatgaggaaacaaggttaagatatgaaatcaggcaagctaagaaaatcaggagagtgtgcaaggttgaaaaagaagtaaatgttgaggcattacggtacaatgaagcagtgataagcttctccaagaaagacgcgatcggggtgcaattcccacaccgagatgcattagtgatctccgtacaggtcgctaattgcctcatgagaaaggtaatggtggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

18.1

Weight (kDa)

9.21

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	173, 386
AciI	CCGC	2 cut(s)	150, 171
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	3 cut(s)	38, 350, 432
AfiI	CCNNNNNNNGG	3 cut(s)	19, 20, 200
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	4 cut(s)	127, 188, 290, 369
AluI	AGCT	4 cut(s)	127, 188, 290, 369
Alw26I	GTCTC	2 cut(s)	85, 153
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	168, 236
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	85, 153
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpuEI	CTTGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 20, 200
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	19, 20, 200
BseRI	GAGGAG	1 cut(s)	119
BseX3I	CGGCCG	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	173, 386
Bsh1285I	CGRYCG	2 cut(s)	171, 390
BshFI	GGCC	2 cut(s)	170, 238
BsiEI	CGRYCG	2 cut(s)	171, 390
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	19, 20, 200
BsmAI	GTCTC	2 cut(s)	85, 153
BsnI	GGCC	2 cut(s)	170, 238
Bsp143I	GATC	4 cut(s)	25, 106, 387, 423
BspACI	CCGC	2 cut(s)	150, 171
BspANI	GGCC	2 cut(s)	170, 238
BspFNI	CGCG	2 cut(s)	173, 386
BspHI	TCATGA	1 cut(s)	450
BspPI	GGATC	1 cut(s)	114
BssMI	GATC	4 cut(s)	25, 106, 387, 423
Bst4CI	ACNGT	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	83, 288
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	173, 386
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	28, 109, 390, 426
BstMAI	GTCTC	2 cut(s)	85, 153
BstMBI	GATC	4 cut(s)	25, 106, 387, 423
BstMCI	CGRYCG	2 cut(s)	171, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	2 cut(s)	173, 386
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	170, 238
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	83, 288
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	37, 349, 431
CviAII	CATG	2 cut(s)	230, 451
CviJI	RGCY	8 cut(s)	127, 165, 170, 188, 224, 238, 290, 369
CviKI_1	RGCY	8 cut(s)	127, 165, 170, 188, 224, 238, 290, 369
CviQI	GTAC	3 cut(s)	37, 349, 431
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	27, 108, 389, 425
DpnII	GATC	4 cut(s)	25, 106, 387, 423
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	203
Eco52I	CGGCCG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	418
FaeI	CATG	2 cut(s)	233, 454
FaiI	YATR	4 cut(s)	51, 231, 276, 452
FatI	CATG	2 cut(s)	229, 450
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	171
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	170, 238
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	233, 454
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	367
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	301, 451
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	13, 228
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	312, 397, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	233, 454
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	25, 106, 387, 423
LmnI	GCTCC	2 cut(s)	132, 193
LpnPI	CCDG	7 cut(s)	95, 180, 198, 234, 268, 286, 419
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	211
MalI	GATC	4 cut(s)	27, 108, 389, 425
MboI	GATC	4 cut(s)	25, 106, 387, 423
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	3 cut(s)	76, 398, 442
MnlI	CCTC	6 cut(s)	97, 140, 250, 256, 331, 458
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	167
MvnI	CGCG	2 cut(s)	173, 386
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	4 cut(s)	25, 106, 387, 423
NlaIII	CATG	2 cut(s)	233, 454
NsiI	ATGCAT	1 cut(s)	418
PagI	TCATGA	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	172
Ple19I	CGATCG	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	203
PsrI	GAACNNNNNNTAC	2 cut(s)	29, 61
PsuI	RGATCY	1 cut(s)	106
PvuI	CGATCG	1 cut(s)	390
RsaI	GTAC	3 cut(s)	38, 350, 432
RsaNI	GTAC	3 cut(s)	37, 349, 431
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	25, 106, 387, 423
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	3 cut(s)	76, 398, 442
SsiI	CCGC	2 cut(s)	150, 171
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	76, 398, 442
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	366
TspDTI	ATGAA	4 cut(s)	128, 218, 291, 369
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.