Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Forward (+)

34515574 .. 34519424

Gene Structure 3851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGGGAGTGGAAGGTCTCAATCTGGATCCTCCCGGCAAGACTAGATCTGGTGGATCACGGTATGACCAAAATGCGGACATTCTCAAAAAGATGAAAAAGATGGACGGAACGAGAATAAATCGTGGGACCAAAACGGTGGCGGGGGAAATCTTGAATGGGCATGGCTTTCAAGAGAGGCGAGGCCAAGTTCACAATTTCTCCGCAACAATCCTACTTGCACAAAAGCACGAGGGTGTATTCACCAAGCTGCCGTCCATGGTGACAGACCCAGCAAATGAGATCAATCCTTGTACTGCGAGTTCCATAAAGAATACTCACACCCTACCAATAATTGCTGGCACCCGAGGCAACAATTCGAGGATCCGATGGAGCATGGAAAACTCCTTCAATACAAAATCCACGGTGGAGAAAGAAGTAACCCAGCTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

9.86

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AciI	CCGC	3 cut(s)	77, 143, 204
AclWI	GGATC	5 cut(s)	23, 36, 64, 358, 371
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	157, 173, 391
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	250, 427
AluI	AGCT	2 cut(s)	250, 427
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	5 cut(s)	23, 36, 64, 358, 371
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	250, 427
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	235, 274
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	129
BamHI	GGATCC	2 cut(s)	28, 363
BanI	GGYRCC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	237, 414
BccI	CCATC	2 cut(s)	97, 363
BceAI	ACGGC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	2 cut(s)	251, 428
BlsI	GCNGC	2 cut(s)	252, 429
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	4 cut(s)	30, 130, 343, 365
BmrFI	CCNGG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	258, 346, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	258, 346, 402
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	237, 414
BseYI	CCCAGC	2 cut(s)	271, 423
BsgI	GTGCAG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	28, 47, 56, 282, 363
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	77, 143, 204
BspANI	GGCC	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	30, 130, 343, 365
BspPI	GGATC	5 cut(s)	23, 36, 64, 358, 371
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	258, 346, 402
BssMI	GATC	5 cut(s)	28, 47, 56, 282, 363
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	63, 139, 406
BstC8I	GCNNGC	1 cut(s)	340
BstDSI	CCRYGG	2 cut(s)	258, 402
BstKTI	GATC	5 cut(s)	31, 50, 59, 285, 366
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	5 cut(s)	28, 47, 56, 282, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	237, 414
BstX2I	RGATCY	3 cut(s)	28, 47, 363
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	3 cut(s)	28, 47, 363
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	2 cut(s)	258, 402
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	3 cut(s)	164, 259, 376
CviJI	RGCY	4 cut(s)	168, 186, 250, 427
CviKI_1	RGCY	4 cut(s)	168, 186, 250, 427
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	5 cut(s)	30, 49, 58, 284, 365
DpnII	GATC	5 cut(s)	28, 47, 56, 282, 363
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	167, 262, 379
FaiI	YATR	5 cut(s)	66, 165, 260, 308, 377
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	163, 258, 375
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	251, 428
Fsp4HI	GCNGC	2 cut(s)	251, 428
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	251, 428
GsaI	CCCAGC	2 cut(s)	275, 427
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	3 cut(s)	167, 262, 379
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	235, 274
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	3 cut(s)	26, 154, 173
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	8, 397
HpyCH4III	ACNGT	3 cut(s)	63, 139, 406
HpyCH4V	TGCA	2 cut(s)	221, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	167, 262, 379
Kzo9I	GATC	5 cut(s)	28, 47, 56, 282, 363
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	5 cut(s)	11, 36, 49, 285, 324
Lsp1109I	GCAGC	2 cut(s)	237, 414
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	262, 418
MalI	GATC	5 cut(s)	30, 49, 58, 284, 365
MboI	GATC	5 cut(s)	28, 47, 56, 282, 363
MflI	RGATCY	3 cut(s)	28, 47, 363
MluCI	AATT	3 cut(s)	196, 333, 355
MnlI	CCTC	6 cut(s)	42, 171, 176, 226, 341, 354
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	348
NciI	CCSGG	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	5 cut(s)	28, 47, 56, 282, 363
NlaIII	CATG	3 cut(s)	167, 262, 379
NlaIV	GGNNCC	4 cut(s)	30, 130, 343, 365
NmuCI	GTSAC	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	252, 429
PspFI	CCCAGC	2 cut(s)	271, 423
PspN4I	GGNNCC	4 cut(s)	30, 130, 343, 365
PspPI	GGNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PsuI	RGATCY	3 cut(s)	28, 47, 363
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	2 cut(s)	251, 428
Sau3AI	GATC	5 cut(s)	28, 47, 56, 282, 363
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	3 cut(s)	19, 252, 429
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	196, 333, 355
SsiI	CCGC	3 cut(s)	77, 143, 204
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	63, 139, 406
TaqI	TCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	196, 333, 355
TatI	WGTACW	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	250, 427
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	129
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.