Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Reverse (-)

44847305 .. 44848069

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAACAGGGAAAGCTCCTCCAATACAAAGTCCAAGATGGGGGAAGCATTAATCCGGCACCGCCGGTTGGCCTGGCTCCTCCCACAAACGGACCAATGCGGGAAATACTAGCTATTCATGGGAGACCACTTTCCCTGGGGGAAGACGAAATGCGATTGCGGTCAGAAATCAGACAAGCAGAGAAAGTCAGAAGAGTTTGCAAGATCGAAAAAGAGGTACGGGAGGAGGCACTGCAGTGCAAGAAAATAGTGATAAGCTTCTCCAAGCGAGATGCAGTCGGGGTTATGTTCCTGAATGCGTTCAAAAAACTAAAGCTCAACTACAGCTACATCAGGCCAAGCAGGGCACCGCTTACTGGTTTCGAGGGGACGGAAACATGGCCAATAGGAGAGATCACGATGTTAGTAACCACGGCAGGAAAAACGGTTGAGGTCGAATTTGTTGTCATGCATAAGATGGAAGCAGAGGCCTTAACCAGATATCAGGTCCTGAAATTCCTTTCTCCCAGAGGAAATTGTATAACCTCCGTCAGAGGAGACCAACTCTTAGCCAAAAAACTCTATGCCATGGAGTTCAAGAAAAACAAACCAGCTACCCAAGGGGAGCAGGAAGAGCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.31

Weight (kDa)

9.56

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 346
AciI	CCGC	4 cut(s)	62, 100, 160, 350
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	2 cut(s)	437, 494
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	4 cut(s)	40, 68, 89, 356
AgsI	TTSAA	2 cut(s)	304, 577
AjnI	CCWGG	2 cut(s)	72, 135
AleI	CACNNNNGTG	1 cut(s)	235
AluBI	AGCT	6 cut(s)	16, 113, 258, 316, 327, 593
AluI	AGCT	6 cut(s)	16, 113, 258, 316, 327, 593
Alw26I	GTCTC	2 cut(s)	118, 531
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	4 cut(s)	70, 335, 380, 468
ApoI	RAATTY	2 cut(s)	437, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AseI	ATTAAT	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	92, 487
AvaII	GGWCC	2 cut(s)	92, 487
BaeGI	GKGCMC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	382
BanI	GGYRCC	2 cut(s)	58, 346
BbsI	GAAGAC	1 cut(s)	150
BccI	CCATC	2 cut(s)	32, 451
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	2 cut(s)	74, 137
BcoDI	GTCTC	2 cut(s)	118, 531
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	2 cut(s)	233, 322
Bme1390I	CCNGG	2 cut(s)	74, 137
Bme18I	GGWCC	2 cut(s)	92, 487
BmgT120I	GGNCC	2 cut(s)	92, 487
BmiI	GGNNCC	3 cut(s)	60, 78, 348
BmrFI	CCNGG	2 cut(s)	74, 137
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	528, 560
BsaI	GGTCTC	2 cut(s)	118, 531
BsaJI	CCNNGG	5 cut(s)	135, 136, 411, 567, 598
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 68, 89, 356
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	74, 137
BseDI	CCNNGG	5 cut(s)	135, 136, 411, 567, 598
BseLI	CCNNNNNNNGG	4 cut(s)	40, 68, 89, 356
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	4 cut(s)	8, 69, 239, 549
BseSI	GKGCMC	1 cut(s)	349
BshFI	GGCC	4 cut(s)	72, 337, 382, 470
BshNI	GGYRCC	2 cut(s)	58, 346
BsiSI	CCGG	2 cut(s)	56, 65
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	4 cut(s)	40, 68, 89, 356
BsmAI	GTCTC	2 cut(s)	118, 531
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	4 cut(s)	72, 337, 382, 470
Bso31I	GGTCTC	2 cut(s)	118, 531
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	204, 393
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	4 cut(s)	62, 100, 160, 350
BspANI	GGCC	4 cut(s)	72, 337, 382, 470
BspLI	GGNNCC	3 cut(s)	60, 78, 348
BspMAI	CTGCAG	1 cut(s)	237
BspQI	GCTCTTC	1 cut(s)	606
BspT107I	GGYRCC	2 cut(s)	58, 346
BspTNI	GGTCTC	2 cut(s)	118, 531
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	5 cut(s)	135, 136, 411, 567, 598
BssMI	GATC	2 cut(s)	204, 393
BssT1I	CCWWGG	2 cut(s)	567, 598
Bst2UI	CCWGG	2 cut(s)	74, 137
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	2 cut(s)	187, 606
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	547
BstDSI	CCRYGG	2 cut(s)	411, 567
BstKTI	GATC	2 cut(s)	207, 396
BstMAI	GTCTC	2 cut(s)	118, 531
BstMBI	GATC	2 cut(s)	204, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNI	CCWGG	2 cut(s)	74, 137
BstSCI	CCNGG	2 cut(s)	72, 135
BstSFI	CTRYAG	2 cut(s)	233, 322
BstSLI	GKGCMC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	72, 337, 382, 470
BtgI	CCRYGG	2 cut(s)	411, 567
BtsI	GCAGTG	2 cut(s)	230, 242
BtsIMutI	CAGTG	2 cut(s)	230, 242
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	92, 487
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	4 cut(s)	119, 378, 448, 568
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	547
DpnI	GATC	2 cut(s)	206, 395
DpnII	GATC	2 cut(s)	204, 393
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	2 cut(s)	187, 606
EarI	CTCTTC	2 cut(s)	187, 606
Eco130I	CCWWGG	2 cut(s)	567, 598
Eco147I	AGGCCT	1 cut(s)	470
Eco31I	GGTCTC	2 cut(s)	118, 531
Eco32I	GATATC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	92, 487
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	72, 135
EcoRV	GATATC	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	567, 598
EcoT22I	ATGCAT	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	567, 598
FaeI	CATG	4 cut(s)	122, 381, 451, 571
FaiI	YATR	9 cut(s)	120, 287, 379, 449, 453, 521, 564, 569, 622
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	4 cut(s)	118, 377, 447, 567
FauI	CCCGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	72, 337, 382, 470
HapII	CCGG	2 cut(s)	56, 65
Hin1II	CATG	4 cut(s)	122, 381, 451, 571
HindIII	AAGCTT	1 cut(s)	256
HpaII	CCGG	2 cut(s)	56, 65
Hpy188I	TCNGA	4 cut(s)	166, 173, 191, 533
Hpy188III	TCNNGA	4 cut(s)	292, 397, 490, 577
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	201, 235, 240, 275, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpyF3I	CTNAG	1 cut(s)	547
Hsp92II	CATG	4 cut(s)	122, 381, 451, 571
Kzo9I	GATC	2 cut(s)	204, 393
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	3 cut(s)	21, 82, 604
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	206, 395
MboI	GATC	2 cut(s)	204, 393
MboII	GAAGA	3 cut(s)	155, 204, 623
MhlI	GDGCHC	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	3 cut(s)	437, 494, 514
MluNI	TGGCCA	1 cut(s)	382
Mox20I	TGGCCA	1 cut(s)	382
Mph1103I	ATGCAT	1 cut(s)	453
MroXI	GAANNNNTTC	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	2 cut(s)	51, 473
MslI	CAYNNNNRTG	1 cut(s)	235
Msp20I	TGGCCA	1 cut(s)	382
MspI	CCGG	2 cut(s)	56, 65
MspR9I	CCNGG	2 cut(s)	74, 137
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	2 cut(s)	74, 137
MwoI	GCNNNNNNNGC	1 cut(s)	613
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	204, 393
NlaIII	CATG	4 cut(s)	122, 381, 451, 571
NlaIV	GGNNCC	3 cut(s)	60, 78, 348
NsiI	ATGCAT	1 cut(s)	453
OliI	CACNNNNGTG	1 cut(s)	235
PasI	CCCWGGG	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	2 cut(s)	72, 135
PspGI	CCWGG	2 cut(s)	72, 135
PspN4I	GGNNCC	3 cut(s)	60, 78, 348
PspPI	GGNCC	2 cut(s)	92, 487
PspPPI	RGGWCCY	1 cut(s)	487
PstI	CTGCAG	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	51, 473
Sau3AI	GATC	2 cut(s)	204, 393
Sau96I	GGNCC	2 cut(s)	92, 487
ScrFI	CCNGG	2 cut(s)	74, 137
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	233, 322
SinI	GGWCC	2 cut(s)	92, 487
SmiMI	CAYNNNNRTG	1 cut(s)	235
Sse9I	AATT	3 cut(s)	437, 494, 514
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	4 cut(s)	62, 100, 160, 350
SspMI	CTAG	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	2 cut(s)	72, 135
StyI	CCWWGG	2 cut(s)	567, 598
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	207, 363, 435
TasI	AATT	3 cut(s)	437, 494, 514
Tru1I	TTAA	2 cut(s)	51, 473
Tru9I	TTAA	2 cut(s)	51, 473
TscAI	CASTG	2 cut(s)	237, 242
TspDTI	ATGAA	2 cut(s)	17, 107
TspGWI	ACGGA	3 cut(s)	105, 386, 517
TspRI	CASTG	2 cut(s)	237, 242
VpaK11BI	GGWCC	2 cut(s)	92, 487
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	2 cut(s)	437, 494
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.