Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Forward (+)

15257597 .. 15259859

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCAATCTCCAAAGGAAGACATGGTGGCTTGTGTGAAGGCACTAGAGGATGCTTTGCTTCCATGCTTGCCTGCCAGAGAGCTTCAAGCAATTGACCGCTCTCCCCATCCTTCTCATCACATTGATGTGGAGAGACATGCCAGAGATTTTATGGACGCTGCCAAAAAGCTTCAGCTGTATTTTCTTGGTCTGCAACGTGAGGATCAGCCAACAAGTGCTGAACAAATTAAACAGGAGATCGGTGTGATGGAAGAGGAGTTGAACATAAAGACTGAGATTATCAAGAAGCATGAAAGGCTAATCCAGGGGTGGAAAAAGGAGTTAAAAGACCAATTGAACAAGCACAATACGGAGCTTCAGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

14.2

Weight (kDa)

6.07

Isoelectric Point (pI)

74.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	11 - 108	1.5e-25	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	99
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	210
AcuI	CTGAAG	2 cut(s)	155, 341
AgsI	TTSAA	3 cut(s)	86, 262, 337
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	82, 169, 175, 355
AluI	AGCT	4 cut(s)	82, 169, 175, 355
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	114, 241
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	2 cut(s)	55, 106
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	202, 237
BspACI	CCGC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	210
BsrBI	CCGCTC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	202, 237
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	68, 72
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	55, 106
BstKTI	GATC	2 cut(s)	205, 240
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	202, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	55, 106
Cac8I	GCNNGC	2 cut(s)	68, 72
CseI	GACGC	1 cut(s)	164
CviAII	CATG	4 cut(s)	22, 63, 137, 290
CviJI	RGCY	7 cut(s)	29, 82, 169, 175, 208, 298, 355
CviKI_1	RGCY	7 cut(s)	29, 82, 169, 175, 208, 298, 355
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	204, 239
DpnII	GATC	2 cut(s)	202, 237
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	155, 341
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	25, 66, 140, 293
FaiI	YATR	6 cut(s)	23, 64, 138, 152, 266, 291
FatI	CATG	4 cut(s)	21, 62, 136, 289
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	62, 93
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	159
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	4 cut(s)	25, 66, 140, 293
HindIII	AAGCTT	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	31, 120
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	4, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	25, 66, 140, 293
Kzo9I	GATC	2 cut(s)	202, 237
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	6 cut(s)	84, 88, 154, 218, 290, 317
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	196
MalI	GATC	2 cut(s)	204, 239
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	2 cut(s)	202, 237
MboII	GAAGA	2 cut(s)	29, 263
MfeI	CAATTG	2 cut(s)	90, 332
MluCI	AATT	3 cut(s)	90, 225, 332
MnlI	CCTC	3 cut(s)	40, 193, 247
MseI	TTAA	2 cut(s)	228, 323
MslI	CAYNNNNRTG	2 cut(s)	123, 125
MspA1I	CMGCKG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	2 cut(s)	90, 332
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	2 cut(s)	202, 237
NlaIII	CATG	4 cut(s)	25, 66, 140, 293
NspI	RCATGY	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	175
RseI	CAYNNNNRTG	2 cut(s)	123, 125
SaqAI	TTAA	2 cut(s)	228, 323
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	202, 237
ScrFI	CCNGG	1 cut(s)	305
SetI	ASST	5 cut(s)	84, 171, 177, 199, 357
SfaNI	GCATC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	123, 125
Sse9I	AATT	3 cut(s)	90, 225, 332
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	199
TasI	AATT	3 cut(s)	90, 225, 332
Tru1I	TTAA	2 cut(s)	228, 323
Tru9I	TTAA	2 cut(s)	228, 323
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	365
XceI	RCATGY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.