Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

8300697 .. 8302163

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTGAGAGAGAACAGCAGCACCAGGGTGATGCACAGATGCAATCTCCAAAGGATGACATGGTGGCATTTGTGATGGCATTGGAGGCTGCTTTGCTTCCATGCTTGCCTGCCAGAGAGACCGTTCACCGCACCCTTGATGTTGAAAGACATGCCAGAGATTTTATGGAAGCTGCCAAAAAGCTTCAGCTCTATTTTTTTGGTCTGCAACGTGAGGATCTGCCCACGAATGCTGAAAAACTCAGAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAAGGTAAAGAATGAGATTATCAAGAAGAATGAAAGGTTAATCCATGGAAAAAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.93

Weight (kDa)

6.43

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	24 - 107	1.9e-16	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	146, 277
AjnI	CCWGG	1 cut(s)	24
AleI	CACNNNNGTG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	173, 184, 190, 333
AluI	AGCT	4 cut(s)	173, 184, 190, 333
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	225
ApeKI	GCWGC	3 cut(s)	19, 89, 173
AsuHPI	GGTGA	2 cut(s)	41, 119
BbvI	GCAGC	3 cut(s)	31, 76, 160
BccI	CCATC	2 cut(s)	70, 256
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	3 cut(s)	20, 90, 174
BlsI	GCNGC	3 cut(s)	21, 91, 175
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	22, 30
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	25, 319
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	25, 319
BseGI	GGATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	31, 76, 160
BsmAI	GTCTC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	255
BspPI	GGATC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	25, 319
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	107, 111
BstDEI	CTNAG	2 cut(s)	6, 242
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	31, 76, 160
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	107, 111
CviAII	CATG	4 cut(s)	61, 102, 152, 320
CviJI	RGCY	6 cut(s)	5, 89, 173, 184, 190, 333
CviKI_1	RGCY	6 cut(s)	5, 89, 173, 184, 190, 333
DdeI	CTNAG	2 cut(s)	6, 242
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	4 cut(s)	64, 105, 155, 323
FaiI	YATR	5 cut(s)	62, 103, 153, 167, 321
FatI	CATG	4 cut(s)	60, 101, 151, 319
Fnu4HI	GCNGC	3 cut(s)	20, 90, 174
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	20, 90, 174
GluI	GCNGC	3 cut(s)	20, 90, 174
Hin1II	CATG	4 cut(s)	64, 105, 155, 323
HindIII	AAGCTT	1 cut(s)	182
HphI	GGTGA	2 cut(s)	41, 119
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	35, 43, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	6, 242
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	4 cut(s)	64, 105, 155, 323
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	5 cut(s)	11, 38, 123, 127, 169
Lsp1109I	GCAGC	3 cut(s)	31, 76, 160
LweI	GCATC	2 cut(s)	22, 30
MaeII	ACGT	1 cut(s)	211
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	278, 313
MflI	RGATCY	1 cut(s)	217
MnlI	CCTC	3 cut(s)	79, 208, 262
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	64, 105, 155, 323
NspI	RCATGY	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	27
PctI	GAATGC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	21, 91, 175
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	20, 90, 174
Sau3AI	GATC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	7 cut(s)	175, 186, 192, 214, 282, 314, 335
SfaNI	GCATC	2 cut(s)	22, 30
SmiMI	CAYNNNNRTG	1 cut(s)	27
SsiI	CCGC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseI	GCWGC	3 cut(s)	19, 89, 173
TspDTI	ATGAA	1 cut(s)	321
XceI	RCATGY	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.