Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

73061938 .. 73062474

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0542300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCACGAAACGCCATGGATGAAACGACGAAGAAAGCTCTAAAGCTCAAGGTTGGAAGACTTCTGCGCTGCATCAACAAGGTGCGCAACGCCGAGAGTCTTCTCCGTGCGTCTTATTCCATCAAGATTCAAGAGCTCCAATCCGACGTTGAGGAAACTTGTACCAGCAATCGTCTGAAACATTTTTGTAAAATCCTCTCCGATCATATCAAAGATCTGCTCCAGTTTGTCCTCGGTGCCTTTGGTATCTCTAATGTGAGGCTCATAGTTCCACAATTCGACTTAGATTTGGAGACTCAAGAGTATTTCACCTCAAGGATCATGGCTGAGTGCGATGCCGTAGCTCCAAATCCAAACGCCACCGTTGGTGCCACTACCGCTCAAACCTCGGTTGTCGCGCCAAAAGCAGCGGTGACTCAAGTTATGTACTGCTGCACAGTCTGCATTGAAGTTAAGAAGTTAAGAAAGGTGCTTAAGAAGAAATCAATTGAGCAAATTAAACTCAATGATGTTAAAAGTGTTTTTCTTTTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.94

Weight (kDa)

9.28

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	236, 368
AccBSI	CCGCTC	1 cut(s)	380
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	378, 410
AclWI	GGATC	1 cut(s)	326
AfaI	GTAC	2 cut(s)	163, 428
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	131, 449
AluBI	AGCT	4 cut(s)	38, 46, 136, 344
AluI	AGCT	4 cut(s)	38, 46, 136, 344
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	69, 407, 432
AspLEI	GCGC	3 cut(s)	69, 87, 400
AsuHPI	GGTGA	2 cut(s)	301, 424
BanI	GGYRCC	2 cut(s)	236, 368
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	64, 92
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	56, 419, 419
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	473
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	3 cut(s)	70, 408, 433
BlsI	GCNGC	3 cut(s)	71, 409, 434
BmiI	GGNNCC	2 cut(s)	238, 370
BmsI	GCATC	2 cut(s)	81, 325
BpiI	GAAGAC	2 cut(s)	64, 92
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	4 cut(s)	32, 282, 298, 402
BsaJI	CCNNGG	3 cut(s)	15, 232, 387
Bse1I	ACTGG	1 cut(s)	223
BseDI	CCNNGG	3 cut(s)	15, 232, 387
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	56, 419, 419
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	398
BshNI	GGYRCC	2 cut(s)	236, 368
BsiHKAI	GWGCWC	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	202, 214, 318
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	378, 410
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	238, 370
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	236, 368
BspTI	CTTAAG	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	15, 232, 387
BssMI	GATC	3 cut(s)	202, 214, 318
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	364, 439
BstAFI	CTTAAG	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	283, 327
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	3 cut(s)	69, 87, 400
BstKTI	GATC	3 cut(s)	205, 217, 321
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	3 cut(s)	202, 214, 318
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 377, 404, 441
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	56, 419, 419
BstV2I	GAAGAC	2 cut(s)	64, 92
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	25
CfoI	GCGC	3 cut(s)	69, 87, 400
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	162, 427
CviAII	CATG	2 cut(s)	16, 322
CviJI	RGCY	6 cut(s)	38, 46, 136, 262, 326, 344
CviKI_1	RGCY	6 cut(s)	38, 46, 136, 262, 326, 344
CviQI	GTAC	2 cut(s)	162, 427
DdeI	CTNAG	2 cut(s)	283, 327
DpnI	GATC	3 cut(s)	204, 216, 320
DpnII	GATC	3 cut(s)	202, 214, 318
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	19, 325
FaiI	YATR	5 cut(s)	17, 207, 266, 323, 425
FatI	CATG	2 cut(s)	15, 321
Fnu4HI	GCNGC	3 cut(s)	70, 408, 433
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	70, 408, 433
FspI	TGCGCA	1 cut(s)	86
GlaI	GCGC	3 cut(s)	68, 86, 399
GluI	GCNGC	3 cut(s)	70, 408, 433
GsuI	CTGGAG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	3 cut(s)	69, 87, 400
Hin1II	CATG	2 cut(s)	19, 325
Hin6I	GCGC	3 cut(s)	67, 85, 398
HinP1I	GCGC	3 cut(s)	67, 85, 398
HinfI	GANTC	4 cut(s)	97, 127, 295, 415
HphI	GGTGA	2 cut(s)	301, 424
Hpy188I	TCNGA	3 cut(s)	145, 177, 202
Hpy188III	TCNNGA	3 cut(s)	124, 131, 299
Hpy99I	CGWCG	2 cut(s)	31, 149
HpyCH4III	ACNGT	2 cut(s)	364, 439
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	72, 435, 444
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 377, 404, 441
HpyF3I	CTNAG	2 cut(s)	283, 327
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	19, 325
HspAI	GCGC	3 cut(s)	67, 85, 398
Kzo9I	GATC	3 cut(s)	202, 214, 318
LmnI	GCTCC	3 cut(s)	141, 225, 349
LpnPI	CCDG	2 cut(s)	178, 236
Lsp1109I	GCAGC	3 cut(s)	56, 419, 419
LweI	GCATC	2 cut(s)	81, 325
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	204, 216, 320
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	3 cut(s)	202, 214, 318
MboII	GAAGA	4 cut(s)	43, 69, 92, 490
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	275, 486, 495
MlyI	GAGTC	3 cut(s)	106, 289, 409
MmeI	TCCRAC	2 cut(s)	34, 168
MnlI	CCTC	6 cut(s)	145, 206, 242, 252, 322, 397
MseI	TTAA	5 cut(s)	453, 461, 474, 498, 513
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	473
MunI	CAATTG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	4 cut(s)	11, 377, 404, 441
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	202, 214, 318
NlaIII	CATG	2 cut(s)	19, 325
NlaIV	GGNNCC	2 cut(s)	238, 370
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	412
NsbI	TGCGCA	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	71, 409, 434
PleI	GAGTC	3 cut(s)	105, 289, 409
PpsI	GAGTC	3 cut(s)	105, 289, 409
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	238, 370
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	163, 428
RsaNI	GTAC	2 cut(s)	162, 427
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	453, 461, 474, 498, 513
SatI	GCNGC	3 cut(s)	70, 408, 433
Sau3AI	GATC	3 cut(s)	202, 214, 318
SchI	GAGTC	3 cut(s)	106, 289, 409
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	81, 325
SmlI	CTYRAG	5 cut(s)	47, 297, 313, 417, 473
SmoI	CTYRAG	5 cut(s)	47, 297, 313, 417, 473
Sse9I	AATT	3 cut(s)	275, 486, 495
SsiI	CCGC	2 cut(s)	378, 410
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	364, 439
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	279
TasI	AATT	3 cut(s)	275, 486, 495
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	5 cut(s)	453, 461, 474, 498, 513
Tru9I	TTAA	5 cut(s)	453, 461, 474, 498, 513
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	69, 407, 432
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.