Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

34220263 .. 34224179

Gene Structure 3917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAATCGAGTTGGTGGAGGAAAAACATTGATAGCTAAGAGAGGTGTTGGTGATGGTTTCAGTGGAGGAGAAGAAGAGGATGGAAATGATCAAGTGGTGGCAGTGGAAGTAAAATTGGAGAAGCGGAGGGAAAGGCACAAGGGGATTGTTTCGCCATTCAAGCGCATGTTAGATCATTGTTCAATTTGGTTTTGCAGAGGAGTTGGTTGTTCTGAGATGGGTGATGCAGCAGAGATGCAATCTCCAAAAGAAGAGATGGTGGCATGTGTGAGGGCACTGGAAGATGCTTTGCTTCCATGCTTGCCTGCCCGAGAGCTCCAAGCAATTGATCGTTCTCCCCACCCTTCTCATCAGATTGATGTGGAGAGACATGCTAGAGATTTTATGGACGCTGCCAAAAAGCTTCAGCTGCATTTTCTTGGTCTGCAACGTGAGGACCAGCCAACAAATGCTGAACAACTTAAAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAATATAAAGACTGAGATCATCAAGAAGCATGAAAGGCTAATCCAGGGGTGGAAAAAGGAGCTAAAAGACCAATTGAACAAGCACAATACTGAGCTTGAGAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.73

Weight (kDa)

6.27

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	89 - 186	6.3e-25	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	160, 183, 496, 571
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	6 cut(s)	35, 316, 403, 409, 556, 589
AluI	AGCT	6 cut(s)	35, 316, 403, 409, 556, 589
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	227, 392, 409
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	62, 233
AvaI	CYCGRG	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	239, 379, 396
BccI	CCATC	5 cut(s)	47, 74, 211, 250, 475
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	375
BisI	GCNGC	3 cut(s)	228, 393, 410
BlsI	GCNGC	3 cut(s)	229, 394, 411
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	3 cut(s)	214, 225, 274
BsaJI	CCNNGG	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	204, 498, 576
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	3 cut(s)	81, 213, 503
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	239, 379, 396
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	277, 318
Bsp143I	GATC	4 cut(s)	88, 172, 328, 510
BspACI	CCGC	1 cut(s)	124
BspCNI	CTCAG	3 cut(s)	205, 499, 577
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	4 cut(s)	88, 172, 328, 510
Bst2UI	CCWGG	1 cut(s)	539
Bst6I	CTCTTC	3 cut(s)	69, 246, 480
BstC8I	GCNNGC	2 cut(s)	302, 306
BstDEI	CTNAG	4 cut(s)	36, 213, 507, 585
BstF5I	GGATG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	4 cut(s)	91, 175, 331, 513
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	4 cut(s)	88, 172, 328, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 409, 529
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	3 cut(s)	169, 267, 374
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	3 cut(s)	239, 379, 396
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	67, 108, 275
Cac8I	GCNNGC	2 cut(s)	302, 306
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	1 cut(s)	398
CviAII	CATG	5 cut(s)	166, 264, 297, 371, 524
CviJI	RGCY	8 cut(s)	35, 316, 403, 409, 442, 532, 556, 589
CviKI_1	RGCY	8 cut(s)	35, 316, 403, 409, 442, 532, 556, 589
DdeI	CTNAG	4 cut(s)	36, 213, 507, 585
DpnI	GATC	4 cut(s)	90, 174, 330, 512
DpnII	GATC	4 cut(s)	88, 172, 328, 510
Eam1104I	CTCTTC	3 cut(s)	69, 246, 480
EarI	CTCTTC	3 cut(s)	69, 246, 480
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	5 cut(s)	169, 267, 300, 374, 527
FaiI	YATR	7 cut(s)	167, 265, 298, 372, 386, 500, 525
FatI	CATG	5 cut(s)	165, 263, 296, 370, 523
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	228, 393, 410
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	228, 393, 410
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	228, 393, 410
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	169, 267, 300, 374, 527
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	62, 233
Hpy188I	TCNGA	2 cut(s)	214, 354
Hpy188III	TCNNGA	1 cut(s)	517
HpyAV	CCTTC	2 cut(s)	354, 589
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	5 cut(s)	195, 227, 238, 412, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 409, 529
HpyF3I	CTNAG	4 cut(s)	36, 213, 507, 585
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	5 cut(s)	169, 267, 300, 374, 527
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 172, 328, 510
LmnI	GCTCC	2 cut(s)	321, 553
LpnPI	CCDG	5 cut(s)	263, 318, 452, 524, 551
Lsp1109I	GCAGC	3 cut(s)	239, 379, 396
LweI	GCATC	3 cut(s)	214, 225, 274
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	430
MalI	GATC	4 cut(s)	90, 174, 330, 512
MboI	GATC	4 cut(s)	88, 172, 328, 510
MboII	GAAGA	5 cut(s)	83, 86, 263, 293, 497
MfeI	CAATTG	2 cut(s)	324, 566
MhlI	GDGCHC	2 cut(s)	277, 318
MluCI	AATT	4 cut(s)	113, 183, 324, 566
MnlI	CCTC	9 cut(s)	11, 35, 59, 70, 120, 191, 264, 427, 481
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	2 cut(s)	324, 566
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	3 cut(s)	160, 409, 529
NdeII	GATC	4 cut(s)	88, 172, 328, 510
NlaIII	CATG	5 cut(s)	169, 267, 300, 374, 527
NspI	RCATGY	3 cut(s)	169, 267, 374
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	229, 394, 411
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	228, 393, 410
Sau3AI	GATC	4 cut(s)	88, 172, 328, 510
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	277, 318
SetI	ASST	9 cut(s)	37, 46, 318, 405, 411, 433, 558, 591, 600
SfaNI	GCATC	3 cut(s)	214, 225, 274
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	113, 183, 324, 566
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	537
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	7
TasI	AATT	4 cut(s)	113, 183, 324, 566
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	67, 108, 282
TseI	GCWGC	3 cut(s)	227, 392, 409
TspDTI	ATGAA	2 cut(s)	17, 540
TspRI	CASTG	3 cut(s)	67, 108, 282
VpaK11BI	GGWCC	1 cut(s)	436
XceI	RCATGY	3 cut(s)	169, 267, 374
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.