Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Forward (+)

13297443 .. 13297767

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAAAAGTCCTAATGCCCTCTTCACAAAGTTAGACTGGGAAACCCAATTGAGAAAAGCTTTTGAAGCTGCAAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGAGATTCACAGAGGGTTTAAGAGTAGCAGCATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTACCCTATTTTTCATGCTTTTGTGAATTGTTTATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.97

Weight (kDa)

6.82

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	10 - 65	3.7e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	22 - 65	5.3e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	65
AluBI	AGCT	2 cut(s)	59, 68
AluI	AGCT	2 cut(s)	59, 68
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	68, 138
BalI	TGGCCA	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	55, 150
BisI	GCNGC	2 cut(s)	69, 139
BlsI	GCNGC	2 cut(s)	70, 140
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	55, 150
BshFI	GGCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	191
BspDI	ATCGAT	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	55, 150
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	231
CviAII	CATG	3 cut(s)	92, 164, 210
CviJI	RGCY	3 cut(s)	59, 68, 191
CviKI_1	RGCY	3 cut(s)	59, 68, 191
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
FaeI	CATG	3 cut(s)	95, 167, 213
FaiI	YATR	3 cut(s)	93, 165, 211
FatI	CATG	3 cut(s)	91, 163, 209
Fnu4HI	GCNGC	2 cut(s)	69, 139
Fsp4HI	GCNGC	2 cut(s)	69, 139
GluI	GCNGC	2 cut(s)	69, 139
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	95, 167, 213
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	178, 185
Hpy188III	TCNNGA	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	95, 167, 213
LpnPI	CCDG	2 cut(s)	22, 123
Lsp1109I	GCAGC	2 cut(s)	55, 150
MboII	GAAGA	1 cut(s)	13
MfeI	CAATTG	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	2 cut(s)	47, 221
MluNI	TGGCCA	1 cut(s)	191
MnlI	CCTC	3 cut(s)	29, 116, 117
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	191
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	95, 167, 213
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	70, 140
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	2 cut(s)	69, 139
SetI	ASST	3 cut(s)	61, 70, 79
SgeI	CNNG	7 cut(s)	49, 104, 110, 122, 160, 176, 222
Sse9I	AATT	2 cut(s)	47, 221
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	47, 221
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	2 cut(s)	68, 138
TspDTI	ATGAA	3 cut(s)	17, 108, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.