Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

8264869 .. 8266383

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTGAGAGAGAACAGCAGCACCAGGGTGATGCACATATGCAATCTCCAAAGGATGACATGGTGGCATTTGTGATGGCATTGGAGGCTGCTTTGCTTCCATGCTTGCCTGCCACAGAGACCGTTCACCGCACCCGTCTCATCAGAGTTATTGATGTTGAGAGACATGCCAGAGATTTTATGGAAGCTGCCAAAAAGCTTCAGCTCTATTTTTTTGGTCTGCAACGTGAGGATGTGCCCACAAATGCTGAAAAACTCAGAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAAGGTAAAGAATGAGATTATCAAGAAGAATGAAAGGTTAATCCAAGGGTGGAAAAAGGAGCTGAAAGACCAATTGGACAGACACAATACTGAGCTCGAGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.52

Weight (kDa)

6.23

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	24 - 118	6.8e-20	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AleI	CACNNNNGTG	1 cut(s)	27
AluBI	AGCT	5 cut(s)	188, 199, 205, 352, 385
AluI	AGCT	5 cut(s)	188, 199, 205, 352, 385
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	3 cut(s)	113, 143, 157
Ama87I	CYCGRG	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	19, 89, 188
AsuHPI	GGTGA	2 cut(s)	41, 119
AvaI	CYCGRG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	31, 76, 175
BccI	CCATC	2 cut(s)	70, 271
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	113, 143, 157
BisI	GCNGC	3 cut(s)	20, 90, 189
BlsI	GCNGC	3 cut(s)	21, 91, 190
Bme1390I	CCNGG	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	25, 334
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	25, 334
BseGI	GGATG	2 cut(s)	61, 238
BseMII	CTCAG	2 cut(s)	271, 372
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	31, 76, 175
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	386
BsmAI	GTCTC	3 cut(s)	113, 143, 157
BsmBI	CGTCTC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	240, 387
BspACI	CCGC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	270, 373
BspTNI	GGTCTC	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	25, 334
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	107, 111
BstDEI	CTNAG	3 cut(s)	6, 257, 381
BstF5I	GGATG	2 cut(s)	61, 238
BstMAI	GTCTC	3 cut(s)	113, 143, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	31, 76, 175
BtsCI	GGATG	2 cut(s)	61, 238
Cac8I	GCNNGC	2 cut(s)	107, 111
CviAII	CATG	3 cut(s)	61, 102, 167
CviJI	RGCY	7 cut(s)	5, 89, 188, 199, 205, 352, 385
CviKI_1	RGCY	7 cut(s)	5, 89, 188, 199, 205, 352, 385
DdeI	CTNAG	3 cut(s)	6, 257, 381
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	3 cut(s)	64, 105, 170
FaiI	YATR	6 cut(s)	39, 41, 62, 103, 168, 182
FatI	CATG	3 cut(s)	60, 101, 166
FauNDI	CATATG	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	20, 90, 189
FokI	GGATG	2 cut(s)	68, 245
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	3 cut(s)	20, 90, 189
GluI	GCNGC	3 cut(s)	20, 90, 189
Hin1II	CATG	3 cut(s)	64, 105, 170
HindIII	AAGCTT	1 cut(s)	197
HphI	GGTGA	2 cut(s)	41, 119
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	146, 260
Hpy188III	TCNNGA	2 cut(s)	313, 388
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	35, 43, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	6, 257, 381
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	64, 105, 170
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	4 cut(s)	11, 38, 123, 184
Lsp1109I	GCAGC	3 cut(s)	31, 76, 175
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	226
MboII	GAAGA	2 cut(s)	293, 328
MfeI	CAATTG	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	240, 387
MluCI	AATT	1 cut(s)	362
MnlI	CCTC	3 cut(s)	79, 223, 277
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	39
NlaIII	CATG	3 cut(s)	64, 105, 170
NspI	RCATGY	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	21, 91, 190
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	20, 90, 189
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	240, 387
SetI	ASST	8 cut(s)	190, 201, 207, 229, 297, 329, 354, 387
SfaNI	GCATC	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	1 cut(s)	130
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseI	GCWGC	3 cut(s)	19, 89, 188
TspDTI	ATGAA	1 cut(s)	336
XceI	RCATGY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.