mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52860 |
| fragaria_vesca | FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690 |
| malus_domestica | MD05G1096300.v1.1 MD10G1102600.v1.1 |
| prunus_persica | Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1 |
| pyrus_communis | pycom05g09510 pycom10g08840 |
| rosa_chinensis | RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541 |
| rosa_laevigata | RLG00000008652 |
| rosa_multiflora | Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00352890 Rroxscaffold_7G00212260 |
| rosa_rugosa | Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300 |
| rosa_samantha | Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500 |
| rosa_wichuraiana | Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3054 |
| Acc16I | TGCGCA | 2 cut(s) | 1992, 3917 |
| Acc36I | ACCTGC | 2 cut(s) | 2360, 2772 |
| Acc65I | GGTACC | 3 cut(s) | 2266, 2786, 3633 |
| AccB1I | GGYRCC | 6 cut(s) | 2266, 2786, 3105, 3213, 3633, 4057 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3572 |
| AccBSI | CCGCTC | 1 cut(s) | 1246 |
| AccI | GTMKAC | 4 cut(s) | 235, 315, 2545, 2840 |
| AciI | CCGC | 7 cut(s) | 617, 917, 1246, 1702, 2797, 3230, 3598 |
| AclWI | GGATC | 8 cut(s) | 144, 465, 1655, 2492, 2505, 3302, 3682, 3884 |
| AcoI | YGGCCR | 1 cut(s) | 2438 |
| AcuI | CTGAAG | 4 cut(s) | 1146, 2630, 3006, 3677 |
| AcvI | CACGTG | 1 cut(s) | 2444 |
| AcyI | GRCGYC | 1 cut(s) | 3910 |
| AfaI | GTAC | 8 cut(s) | 72, 810, 1651, 1826, 2268, 2788, 3031, 3635 |
| AflII | CTTAAG | 3 cut(s) | 673, 845, 3896 |
| AflIII | ACRYGT | 2 cut(s) | 308, 2044 |
| AgeI | ACCGGT | 1 cut(s) | 3004 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 555 |
| AjnI | CCWGG | 8 cut(s) | 851, 975, 2259, 2528, 3140, 3338, 3621, 3816 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3274, 3306 |
| Alw21I | GWGCWC | 5 cut(s) | 79, 436, 1354, 2342, 3778 |
| Alw26I | GTCTC | 8 cut(s) | 164, 170, 759, 2735, 3329, 3385, 3455, 3594 |
| Alw44I | GTGCAC | 1 cut(s) | 75 |
| AlwI | GGATC | 8 cut(s) | 144, 465, 1655, 2492, 2505, 3302, 3682, 3884 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 3275, 3278, 4001, 4069 |
| Ama87I | CYCGRG | 1 cut(s) | 24 |
| ApaLI | GTGCAC | 1 cut(s) | 75 |
| AseI | ATTAAT | 1 cut(s) | 3530 |
| AsiGI | ACCGGT | 1 cut(s) | 3004 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 291 |
| Asp718I | GGTACC | 3 cut(s) | 2266, 2786, 3633 |
| AspA2I | CCTAGG | 1 cut(s) | 3077 |
| AspLEI | GCGC | 5 cut(s) | 342, 1177, 1993, 2010, 3918 |
| AsuC2I | CCSGG | 1 cut(s) | 1356 |
| AsuII | TTCGAA | 1 cut(s) | 683 |
| AvaI | CYCGRG | 1 cut(s) | 24 |
| AvaII | GGWCC | 4 cut(s) | 1699, 1921, 1960, 3199 |
| AvrII | CCTAGG | 1 cut(s) | 3077 |
| AxyI | CCTNAGG | 1 cut(s) | 2946 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2778, 2811 |
| BalI | TGGCCA | 1 cut(s) | 2440 |
| BamHI | GGATCC | 1 cut(s) | 2497 |
| BanI | GGYRCC | 6 cut(s) | 2266, 2786, 3105, 3213, 3633, 4057 |
| BanII | GRGCYC | 3 cut(s) | 586, 2342, 3480 |
| BbrPI | CACGTG | 1 cut(s) | 2444 |
| BbsI | GAAGAC | 2 cut(s) | 978, 2237 |
| Bbv12I | GWGCWC | 5 cut(s) | 79, 436, 1354, 2342, 3778 |
| BccI | CCATC | 9 cut(s) | 1041, 1052, 2504, 2675, 2777, 2989, 3455, 3665, 4114 |
| BceAI | ACGGC | 2 cut(s) | 3243, 3621 |
| BciT130I | CCWGG | 8 cut(s) | 853, 977, 2261, 2530, 3142, 3340, 3623, 3818 |
| BciVI | GTATCC | 3 cut(s) | 1052, 1207, 1605 |
| BclI | TGATCA | 2 cut(s) | 1030, 3685 |
| BcnI | CCSGG | 1 cut(s) | 1356 |
| BcoDI | GTCTC | 8 cut(s) | 164, 170, 759, 2735, 3329, 3385, 3455, 3594 |
| BfaI | CTAG | 6 cut(s) | 479, 642, 1544, 3078, 3525, 3948 |
| BfmI | CTRYAG | 3 cut(s) | 948, 2078, 2542 |
| BfrI | CTTAAG | 3 cut(s) | 673, 845, 3896 |
| BfuAI | ACCTGC | 2 cut(s) | 2360, 2772 |
| BfuI | GTATCC | 3 cut(s) | 1052, 1207, 1605 |
| BglII | AGATCT | 1 cut(s) | 1314 |
| BlnI | CCTAGG | 1 cut(s) | 3077 |
| BlpI | GCTNAGC | 1 cut(s) | 258 |
| Bme1390I | CCNGG | 9 cut(s) | 853, 977, 1356, 2261, 2530, 3142, 3340, 3623, 3818 |
| Bme18I | GGWCC | 4 cut(s) | 1699, 1921, 1960, 3199 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 555 |
| BmeT110I | CYCGRG | 1 cut(s) | 24 |
| BmrFI | CCNGG | 9 cut(s) | 853, 977, 1356, 2261, 2530, 3142, 3340, 3623, 3818 |
| BmrI | ACTGGG | 1 cut(s) | 391 |
| BmsI | GCATC | 6 cut(s) | 831, 904, 1147, 2703, 3256, 3740 |
| BmuI | ACTGGG | 1 cut(s) | 391 |
| BpiI | GAAGAC | 2 cut(s) | 978, 2237 |
| BpmI | CTGGAG | 3 cut(s) | 166, 874, 1523 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 258 |
| Bpu14I | TTCGAA | 1 cut(s) | 683 |
| BpuEI | CTTGAG | 3 cut(s) | 2534, 2717, 3437 |
| BpuMI | CCSGG | 1 cut(s) | 1356 |
| Bsa29I | ATCGAT | 2 cut(s) | 1118, 4114 |
| BsaAI | YACGTR | 3 cut(s) | 74, 546, 2444 |
| BsaHI | GRCGYC | 1 cut(s) | 3910 |
| BsaI | GGTCTC | 3 cut(s) | 164, 2735, 3329 |
| BsaWI | WCCGGW | 2 cut(s) | 133, 3004 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 557, 587, 691, 721, 3919, 3949, 4026, 4056 |
| Bse118I | RCCGGY | 1 cut(s) | 3004 |
| Bse1I | ACTGG | 5 cut(s) | 386, 734, 816, 1309, 2169 |
| Bse21I | CCTNAGG | 1 cut(s) | 2946 |
| Bse3DI | GCAATG | 3 cut(s) | 658, 2310, 2774 |
| BseBI | CCWGG | 8 cut(s) | 853, 977, 2261, 2530, 3142, 3340, 3623, 3818 |
| BseCI | ATCGAT | 2 cut(s) | 1118, 4114 |
| BseGI | GGATG | 6 cut(s) | 880, 1345, 2714, 2788, 2863, 3731 |
| BseMI | GCAATG | 3 cut(s) | 658, 2310, 2774 |
| BseNI | ACTGG | 5 cut(s) | 386, 734, 816, 1309, 2169 |
| BseRI | GAGGAG | 7 cut(s) | 338, 941, 1520, 1970, 2138, 3633, 3636 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseYI | CCCAGC | 3 cut(s) | 335, 2818, 3154 |
| BsgI | GTGCAG | 1 cut(s) | 2483 |
| BshNI | GGYRCC | 6 cut(s) | 2266, 2786, 3105, 3213, 3633, 4057 |
| BshTI | ACCGGT | 1 cut(s) | 3004 |
| BshVI | ATCGAT | 2 cut(s) | 1118, 4114 |
| BsiHKAI | GWGCWC | 5 cut(s) | 79, 436, 1354, 2342, 3778 |
| BsiHKCI | CYCGRG | 1 cut(s) | 24 |
| BsiSI | CCGG | 4 cut(s) | 134, 859, 1355, 3005 |
| BslFI | GGGAC | 4 cut(s) | 788, 1076, 1934, 3752 |
| BsmAI | GTCTC | 8 cut(s) | 164, 170, 759, 2735, 3329, 3385, 3455, 3594 |
| BsmBI | CGTCTC | 1 cut(s) | 170 |
| BsmFI | GGGAC | 4 cut(s) | 788, 1076, 1934, 3752 |
| BsmI | GAATGC | 3 cut(s) | 25, 700, 4072 |
| Bso31I | GGTCTC | 3 cut(s) | 164, 2735, 3329 |
| BsoBI | CYCGRG | 1 cut(s) | 24 |
| Bsp119I | TTCGAA | 1 cut(s) | 683 |
| Bsp1286I | GDGCHC | 7 cut(s) | 79, 436, 586, 1354, 2342, 3480, 3778 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 258 |
| Bsp19I | CCATGG | 1 cut(s) | 2921 |
| BspACI | CCGC | 7 cut(s) | 617, 917, 1246, 1702, 2797, 3230, 3598 |
| BspDI | ATCGAT | 2 cut(s) | 1118, 4114 |
| BspHI | TCATGA | 3 cut(s) | 436, 2067, 3352 |
| BspMI | ACCTGC | 2 cut(s) | 2360, 2772 |
| BspPI | GGATC | 8 cut(s) | 144, 465, 1655, 2492, 2505, 3302, 3682, 3884 |
| BspQI | GCTCTTC | 1 cut(s) | 3547 |
| BspT104I | TTCGAA | 1 cut(s) | 683 |
| BspT107I | GGYRCC | 6 cut(s) | 2266, 2786, 3105, 3213, 3633, 4057 |
| BspTI | CTTAAG | 3 cut(s) | 673, 845, 3896 |
| BspTNI | GGTCTC | 3 cut(s) | 164, 2735, 3329 |
| BsrBI | CCGCTC | 1 cut(s) | 1246 |
| BsrDI | GCAATG | 3 cut(s) | 658, 2310, 2774 |
| BsrFI | RCCGGY | 1 cut(s) | 3004 |
| BsrI | ACTGG | 5 cut(s) | 386, 734, 816, 1309, 2169 |
| BssAI | RCCGGY | 1 cut(s) | 3004 |
| BssNAI | GTATAC | 1 cut(s) | 236 |
| BssNI | GRCGYC | 1 cut(s) | 3910 |
| BssT1I | CCWWGG | 7 cut(s) | 154, 395, 586, 2921, 3042, 3077, 3905 |
| Bst1107I | GTATAC | 1 cut(s) | 236 |
| Bst2UI | CCWGG | 8 cut(s) | 853, 977, 2261, 2530, 3142, 3340, 3623, 3818 |
| Bst4CI | ACNGT | 9 cut(s) | 271, 1327, 1898, 2420, 2454, 2791, 3266, 3935, 3954 |
| Bst6I | CTCTTC | 4 cut(s) | 17, 2606, 2982, 3547 |
| BstACI | GRCGYC | 1 cut(s) | 3910 |
| BstAFI | CTTAAG | 3 cut(s) | 673, 845, 3896 |
| BstBAI | YACGTR | 3 cut(s) | 74, 546, 2444 |
| BstBI | TTCGAA | 1 cut(s) | 683 |
| BstC8I | GCNNGC | 4 cut(s) | 54, 1014, 1397, 4011 |
| BstDSI | CCRYGG | 2 cut(s) | 2790, 2921 |
| BstEII | GGTNACC | 1 cut(s) | 2640 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1952 |
| BstF5I | GGATG | 6 cut(s) | 880, 1345, 2714, 2788, 2863, 3731 |
| BstHHI | GCGC | 5 cut(s) | 342, 1177, 1993, 2010, 3918 |
| BstMAI | GTCTC | 8 cut(s) | 164, 170, 759, 2735, 3329, 3385, 3455, 3594 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 739, 1172, 2525, 3079, 3184, 3213, 3222, 3782 |
| BstNI | CCWGG | 8 cut(s) | 853, 977, 2261, 2530, 3142, 3340, 3623, 3818 |
| BstNSI | RCATGY | 4 cut(s) | 251, 312, 1181, 2048 |
| BstPI | GGTNACC | 1 cut(s) | 2640 |
| BstSCI | CCNGG | 9 cut(s) | 851, 975, 1354, 2259, 2528, 3140, 3338, 3621, 3816 |
| BstSFI | CTRYAG | 3 cut(s) | 948, 2078, 2542 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstV2I | GAAGAC | 2 cut(s) | 978, 2237 |
| BstX2I | RGATCY | 5 cut(s) | 149, 470, 1314, 2497, 3294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 207 |
| BstYI | RGATCY | 5 cut(s) | 149, 470, 1314, 2497, 3294 |
| BstZ17I | GTATAC | 1 cut(s) | 236 |
| Bsu15I | ATCGAT | 2 cut(s) | 1118, 4114 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2946 |
| BsuI | GTATCC | 3 cut(s) | 1052, 1207, 1605 |
| BsuTUI | ATCGAT | 2 cut(s) | 1118, 4114 |
| BtgI | CCRYGG | 2 cut(s) | 2790, 2921 |
| BtsCI | GGATG | 6 cut(s) | 880, 1345, 2714, 2788, 2863, 3731 |
| BtsI | GCAGTG | 1 cut(s) | 1934 |
| BtsIMutI | CAGTG | 5 cut(s) | 1354, 1934, 2176, 2588, 4002 |
| BveI | ACCTGC | 2 cut(s) | 2360, 2772 |
| Cac8I | GCNNGC | 4 cut(s) | 54, 1014, 1397, 4011 |
| CaiI | CAGNNNCTG | 4 cut(s) | 3275, 3278, 4001, 4069 |
| CciI | TCATGA | 3 cut(s) | 436, 2067, 3352 |
| CfoI | GCGC | 5 cut(s) | 342, 1177, 1993, 2010, 3918 |
| Cfr10I | RCCGGY | 1 cut(s) | 3004 |
| ClaI | ATCGAT | 2 cut(s) | 1118, 4114 |
| CseI | GACGC | 3 cut(s) | 1113, 3791, 3899 |
| Csp6I | GTAC | 8 cut(s) | 71, 809, 1650, 1825, 2267, 2787, 3030, 3634 |
| CspAI | ACCGGT | 1 cut(s) | 3004 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1864, 1899 |
| CviQI | GTAC | 8 cut(s) | 71, 809, 1650, 1825, 2267, 2787, 3030, 3634 |
| DraI | TTTAAA | 3 cut(s) | 1561, 2100, 3490 |
| DriI | GACNNNNNGTC | 1 cut(s) | 555 |
| EaeI | YGGCCR | 1 cut(s) | 2438 |
| Eam1104I | CTCTTC | 4 cut(s) | 17, 2606, 2982, 3547 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 555 |
| EarI | CTCTTC | 4 cut(s) | 17, 2606, 2982, 3547 |
| Ecl136II | GAGCTC | 1 cut(s) | 2340 |
| Eco130I | CCWWGG | 7 cut(s) | 154, 395, 586, 2921, 3042, 3077, 3905 |
| Eco147I | AGGCCT | 1 cut(s) | 1534 |
| Eco24I | GRGCYC | 3 cut(s) | 586, 2342, 3480 |
| Eco31I | GGTCTC | 3 cut(s) | 164, 2735, 3329 |
| Eco47I | GGWCC | 4 cut(s) | 1699, 1921, 1960, 3199 |
| Eco53kI | GAGCTC | 1 cut(s) | 2340 |
| Eco57I | CTGAAG | 4 cut(s) | 1146, 2630, 3006, 3677 |
| Eco72I | CACGTG | 1 cut(s) | 2444 |
| Eco81I | CCTNAGG | 1 cut(s) | 2946 |
| Eco88I | CYCGRG | 1 cut(s) | 24 |
| Eco91I | GGTNACC | 1 cut(s) | 2640 |
| EcoICRI | GAGCTC | 1 cut(s) | 2340 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1952 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1358, 1409, 1921, 1960, 3199 |
| EcoO65I | GGTNACC | 1 cut(s) | 2640 |
| EcoRI | GAATTC | 3 cut(s) | 2137, 2220, 3991 |
| EcoRII | CCWGG | 8 cut(s) | 851, 975, 2259, 2528, 3140, 3338, 3621, 3816 |
| EcoT14I | CCWWGG | 7 cut(s) | 154, 395, 586, 2921, 3042, 3077, 3905 |
| EcoT22I | ATGCAT | 1 cut(s) | 2696 |
| EcoT38I | GRGCYC | 3 cut(s) | 586, 2342, 3480 |
| ErhI | CCWWGG | 7 cut(s) | 154, 395, 586, 2921, 3042, 3077, 3905 |
| Esp3I | CGTCTC | 1 cut(s) | 170 |
| FaqI | GGGAC | 4 cut(s) | 788, 1076, 1934, 3752 |
| FbaI | TGATCA | 2 cut(s) | 1030, 3685 |
| FblI | GTMKAC | 4 cut(s) | 235, 315, 2545, 2840 |
| FokI | GGATG | 6 cut(s) | 887, 1352, 2701, 2795, 2850, 3718 |
| FriOI | GRGCYC | 3 cut(s) | 586, 2342, 3480 |
| FspBI | CTAG | 6 cut(s) | 479, 642, 1544, 3078, 3525, 3948 |
| FspI | TGCGCA | 2 cut(s) | 1992, 3917 |
| GlaI | GCGC | 5 cut(s) | 341, 1176, 1992, 2009, 3917 |
| GsaI | CCCAGC | 3 cut(s) | 339, 2822, 3158 |
| GsuI | CTGGAG | 3 cut(s) | 166, 874, 1523 |
| HapII | CCGG | 4 cut(s) | 134, 859, 1355, 3005 |
| HgaI | GACGC | 3 cut(s) | 1113, 3791, 3899 |
| HhaI | GCGC | 5 cut(s) | 342, 1177, 1993, 2010, 3918 |
| Hin1I | GRCGYC | 1 cut(s) | 3910 |
| Hin6I | GCGC | 5 cut(s) | 340, 1175, 1991, 2008, 3916 |
| HinP1I | GCGC | 5 cut(s) | 340, 1175, 1991, 2008, 3916 |
| HincII | GTYRAC | 1 cut(s) | 43 |
| HindII | GTYRAC | 1 cut(s) | 43 |
| HindIII | AAGCTT | 2 cut(s) | 894, 4007 |
| HpaII | CCGG | 4 cut(s) | 134, 859, 1355, 3005 |
| Hpy99I | CGWCG | 3 cut(s) | 561, 2211, 3192 |
| HpyCH4III | ACNGT | 9 cut(s) | 271, 1327, 1898, 2420, 2454, 2791, 3266, 3935, 3954 |
| HpyCH4IV | ACGT | 5 cut(s) | 73, 545, 1827, 2206, 2443 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 739, 1172, 2525, 3079, 3184, 3213, 3222, 3782 |
| HpySE526I | ACGT | 5 cut(s) | 73, 545, 1827, 2206, 2443 |
| Hsp92I | GRCGYC | 1 cut(s) | 3910 |
| HspAI | GCGC | 5 cut(s) | 340, 1175, 1991, 2008, 3916 |
| KflI | GGGWCCC | 1 cut(s) | 1921 |
| KpnI | GGTACC | 3 cut(s) | 2270, 2790, 3637 |
| Ksp22I | TGATCA | 2 cut(s) | 1030, 3685 |
| LguI | GCTCTTC | 1 cut(s) | 3547 |
| LmnI | GCTCC | 7 cut(s) | 202, 855, 1243, 1357, 1770, 3613, 4022 |
| LweI | GCATC | 6 cut(s) | 831, 904, 1147, 2703, 3256, 3740 |
| MaeI | CTAG | 6 cut(s) | 479, 642, 1544, 3078, 3525, 3948 |
| MaeII | ACGT | 5 cut(s) | 73, 545, 1827, 2206, 2443 |
| MbiI | CCGCTC | 1 cut(s) | 1246 |
| MfeI | CAATTG | 3 cut(s) | 418, 2845, 3510 |
| MflI | RGATCY | 5 cut(s) | 149, 470, 1314, 2497, 3294 |
| MhlI | GDGCHC | 7 cut(s) | 79, 436, 586, 1354, 2342, 3480, 3778 |
| MlsI | TGGCCA | 1 cut(s) | 2440 |
| MluNI | TGGCCA | 1 cut(s) | 2440 |
| MlyI | GAGTC | 7 cut(s) | 339, 700, 1517, 1917, 2467, 2541, 2846 |
| MmeI | TCCRAC | 3 cut(s) | 555, 2450, 3191 |
| Mox20I | TGGCCA | 1 cut(s) | 2440 |
| Mph1103I | ATGCAT | 1 cut(s) | 2696 |
| MroXI | GAANNNNTTC | 1 cut(s) | 291 |
| MscI | TGGCCA | 1 cut(s) | 2440 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1235 |
| Msp20I | TGGCCA | 1 cut(s) | 2440 |
| MspA1I | CMGCKG | 2 cut(s) | 1707, 3275 |
| MspCI | CTTAAG | 3 cut(s) | 673, 845, 3896 |
| MspI | CCGG | 4 cut(s) | 134, 859, 1355, 3005 |
| MspR9I | CCNGG | 9 cut(s) | 853, 977, 1356, 2261, 2530, 3142, 3340, 3623, 3818 |
| MssI | GTTTAAAC | 1 cut(s) | 3490 |
| MunI | CAATTG | 3 cut(s) | 418, 2845, 3510 |
| Mva1269I | GAATGC | 3 cut(s) | 25, 700, 4072 |
| MvaI | CCWGG | 8 cut(s) | 853, 977, 2261, 2530, 3142, 3340, 3623, 3818 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 739, 1172, 2525, 3079, 3184, 3213, 3222, 3782 |
| NciI | CCSGG | 1 cut(s) | 1356 |
| NcoI | CCATGG | 1 cut(s) | 2921 |
| NmuCI | GTSAC | 5 cut(s) | 250, 1264, 2405, 2640, 2849 |
| NsbI | TGCGCA | 2 cut(s) | 1992, 3917 |
| NsiI | ATGCAT | 1 cut(s) | 2696 |
| NspI | RCATGY | 4 cut(s) | 251, 312, 1181, 2048 |
| NspV | TTCGAA | 1 cut(s) | 683 |
| PagI | TCATGA | 3 cut(s) | 436, 2067, 3352 |
| PceI | AGGCCT | 1 cut(s) | 1534 |
| PciI | ACATGT | 2 cut(s) | 308, 2044 |
| PciSI | GCTCTTC | 1 cut(s) | 3547 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1909 |
| PctI | GAATGC | 3 cut(s) | 25, 700, 4072 |
| PdmI | GAANNNNTTC | 1 cut(s) | 291 |
| PflFI | GACNNNGTC | 2 cut(s) | 2063, 2205 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3572 |
| PfoI | TCCNGGA | 1 cut(s) | 851 |
| PinAI | ACCGGT | 1 cut(s) | 3004 |
| PleI | GAGTC | 7 cut(s) | 339, 700, 1516, 1916, 2467, 2541, 2845 |
| PmaCI | CACGTG | 1 cut(s) | 2444 |
| PmeI | GTTTAAAC | 1 cut(s) | 3490 |
| PmlI | CACGTG | 1 cut(s) | 2444 |
| PpsI | GAGTC | 7 cut(s) | 339, 700, 1516, 1916, 2467, 2541, 2845 |
| Ppu21I | YACGTR | 3 cut(s) | 74, 546, 2444 |
| PpuMI | RGGWCCY | 3 cut(s) | 1921, 1960, 3199 |
| PscI | ACATGT | 2 cut(s) | 308, 2044 |
| PshBI | ATTAAT | 1 cut(s) | 3530 |
| PsiI | TTATAA | 1 cut(s) | 3054 |
| Psp124BI | GAGCTC | 1 cut(s) | 2342 |
| Psp5II | RGGWCCY | 3 cut(s) | 1921, 1960, 3199 |
| Psp6I | CCWGG | 8 cut(s) | 851, 975, 2259, 2528, 3140, 3338, 3621, 3816 |
| PspCI | CACGTG | 1 cut(s) | 2444 |
| PspEI | GGTNACC | 1 cut(s) | 2640 |
| PspFI | CCCAGC | 3 cut(s) | 335, 2818, 3154 |
| PspGI | CCWGG | 8 cut(s) | 851, 975, 2259, 2528, 3140, 3338, 3621, 3816 |
| PspPPI | RGGWCCY | 3 cut(s) | 1921, 1960, 3199 |
| PstNI | CAGNNNCTG | 4 cut(s) | 3275, 3278, 4001, 4069 |
| PsuI | RGATCY | 5 cut(s) | 149, 470, 1314, 2497, 3294 |
| PsyI | GACNNNGTC | 2 cut(s) | 2063, 2205 |
| PvuII | CAGCTG | 2 cut(s) | 1707, 3275 |
| RsaI | GTAC | 8 cut(s) | 72, 810, 1651, 1826, 2268, 2788, 3031, 3635 |
| RsaNI | GTAC | 8 cut(s) | 71, 809, 1650, 1825, 2267, 2787, 3030, 3634 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1235 |
| SacI | GAGCTC | 1 cut(s) | 2342 |
| SapI | GCTCTTC | 1 cut(s) | 3547 |
| SchI | GAGTC | 7 cut(s) | 339, 700, 1517, 1917, 2467, 2541, 2846 |
| ScrFI | CCNGG | 9 cut(s) | 853, 977, 1356, 2261, 2530, 3142, 3340, 3623, 3818 |
| SduI | GDGCHC | 7 cut(s) | 79, 436, 586, 1354, 2342, 3480, 3778 |
| SfaNI | GCATC | 6 cut(s) | 831, 904, 1147, 2703, 3256, 3740 |
| SfcI | CTRYAG | 3 cut(s) | 948, 2078, 2542 |
| SfuI | TTCGAA | 1 cut(s) | 683 |
| SinI | GGWCC | 4 cut(s) | 1699, 1921, 1960, 3199 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1235 |
| SmlI | CTYRAG | 6 cut(s) | 673, 845, 2549, 2732, 3452, 3896 |
| SmoI | CTYRAG | 6 cut(s) | 673, 845, 2549, 2732, 3452, 3896 |
| SseBI | AGGCCT | 1 cut(s) | 1534 |
| SsiI | CCGC | 7 cut(s) | 617, 917, 1246, 1702, 2797, 3230, 3598 |
| SspI | AATATT | 6 cut(s) | 1578, 1837, 2236, 2300, 3418, 3961 |
| SspMI | CTAG | 6 cut(s) | 479, 642, 1544, 3078, 3525, 3948 |
| SstI | GAGCTC | 1 cut(s) | 2342 |
| StuI | AGGCCT | 1 cut(s) | 1534 |
| StyD4I | CCNGG | 9 cut(s) | 851, 975, 1354, 2259, 2528, 3140, 3338, 3621, 3816 |
| StyI | CCWWGG | 7 cut(s) | 154, 395, 586, 2921, 3042, 3077, 3905 |
| TaaI | ACNGT | 9 cut(s) | 271, 1327, 1898, 2420, 2454, 2791, 3266, 3935, 3954 |
| TaiI | ACGT | 5 cut(s) | 76, 548, 1830, 2209, 2446 |
| TaqI | TCGA | 4 cut(s) | 683, 1118, 3474, 4114 |
| TaqII | GACCGA | 1 cut(s) | 2717 |
| TatI | WGTACW | 1 cut(s) | 808 |
| TauI | GCSGC | 3 cut(s) | 1249, 3233, 3601 |
| TscAI | CASTG | 5 cut(s) | 1354, 1941, 2176, 2595, 4002 |
| TseFI | GTSAC | 5 cut(s) | 250, 1264, 2405, 2640, 2849 |
| Tsp45I | GTSAC | 5 cut(s) | 250, 1264, 2405, 2640, 2849 |
| TspGWI | ACGGA | 5 cut(s) | 152, 578, 699, 704, 1901 |
| TspRI | CASTG | 5 cut(s) | 1354, 1941, 2176, 2595, 4002 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2063, 2205 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3572 |
| Vha464I | CTTAAG | 3 cut(s) | 673, 845, 3896 |
| VneI | GTGCAC | 1 cut(s) | 75 |
| VpaK11BI | GGWCC | 4 cut(s) | 1699, 1921, 1960, 3199 |
| VspI | ATTAAT | 1 cut(s) | 3530 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1952 |
| XbaI | TCTAGA | 1 cut(s) | 3947 |
| XceI | RCATGY | 4 cut(s) | 251, 312, 1181, 2048 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 227, 532, 2176 |
| XmaJI | CCTAGG | 1 cut(s) | 3077 |
| XmiI | GTMKAC | 4 cut(s) | 235, 315, 2545, 2840 |
| XmnI | GAANNNNTTC | 1 cut(s) | 291 |
| XspI | CTAG | 6 cut(s) | 479, 642, 1544, 3078, 3525, 3948 |
| Zsp2I | ATGCAT | 1 cut(s) | 2696 |