Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Reverse (-)

15886489 .. 15888846

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G140700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGTATTTTGCAGGTGTTGGTTATCTTTCACATGGCTGAGAGACAAGCGGCAGATCAGCAGCAGCATCAAATTGATGCCCAGATGCAATCCCCACAACCTCAAAGGGAAGACATGGTTGCCTGTGTGATAGCACTGGAGGCTGCTTTGCTTCCATGCTTGCCTGCCAGAGAGCTTCAAGCAATTGACCGGTCTCCCCACCCTTCTCATCAGATTGATGTGGAGAGGCATGCCAGAGATTTTATGGAAGCTGCCAAAAAGCTTCAACTATATTTTATTGGTCTACAACGTGAGGATCAGCCAACCAAGGCTCAACAACTTAGAAAGGAGATTGATGCAATGGAAGAGGAGTTGAGGATAAAGACTGAGCTTATCAAGAAGCATGAAAGGCTGATCCAAGGGTGGAAAAAGGATCTGAAAGACCAATTGGACAAGCACAACACTGAGCTTGAGAGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.89

Weight (kDa)

5.97

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4
Acc36I	ACCTGC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	3 cut(s)	303, 388, 420
AgeI	ACCGGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	179, 266
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	175, 251, 262, 370, 448
AluI	AGCT	5 cut(s)	175, 251, 262, 370, 448
Alw26I	GTCTC	2 cut(s)	37, 198
AlwI	GGATC	3 cut(s)	303, 388, 420
ApeKI	GCWGC	4 cut(s)	61, 64, 143, 251
AsiGI	ACCGGT	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	73, 76, 130, 238
BcoDI	GTCTC	2 cut(s)	37, 198
BfuAI	ACCTGC	1 cut(s)	4
BisI	GCNGC	5 cut(s)	51, 62, 65, 144, 252
BlsI	GCNGC	5 cut(s)	52, 63, 66, 145, 253
BmsI	GCATC	4 cut(s)	67, 75, 76, 325
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	306, 397
BsaWI	WCCGGW	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	306, 397
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	30, 357, 435
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	73, 76, 130, 238
BshTI	ACCGGT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	37, 198
Bso31I	GGTCTC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	55, 295, 393, 412
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	31, 358, 436
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	3 cut(s)	303, 388, 420
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	306, 397
BssMI	GATC	4 cut(s)	55, 295, 393, 412
BssT1I	CCWWGG	2 cut(s)	306, 397
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	161, 165, 231
BstDEI	CTNAG	4 cut(s)	39, 320, 366, 444
BstKTI	GATC	4 cut(s)	58, 298, 396, 415
BstMAI	GTCTC	2 cut(s)	37, 198
BstMBI	GATC	4 cut(s)	55, 295, 393, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 388
BstNSI	RCATGY	1 cut(s)	233
BstV1I	GCAGC	4 cut(s)	73, 76, 130, 238
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	134, 441
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	3 cut(s)	161, 165, 231
Cfr10I	RCCGGY	1 cut(s)	189
CspAI	ACCGGT	1 cut(s)	189
CviAII	CATG	5 cut(s)	34, 115, 156, 230, 383
DdeI	CTNAG	4 cut(s)	39, 320, 366, 444
DpnI	GATC	4 cut(s)	57, 297, 395, 414
DpnII	GATC	4 cut(s)	55, 295, 393, 412
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	306, 397
Eco31I	GGTCTC	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	306, 397
ErhI	CCWWGG	2 cut(s)	306, 397
FaeI	CATG	5 cut(s)	37, 118, 159, 233, 386
FaiI	YATR	7 cut(s)	35, 116, 157, 231, 245, 271, 384
FatI	CATG	5 cut(s)	33, 114, 155, 229, 382
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	51, 62, 65, 144, 252
Fsp4HI	GCNGC	5 cut(s)	51, 62, 65, 144, 252
GluI	GCNGC	5 cut(s)	51, 62, 65, 144, 252
GsuI	CTGGAG	1 cut(s)	158
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	5 cut(s)	37, 118, 159, 233, 386
HindIII	AAGCTT	1 cut(s)	260
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	213, 417
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	13, 88, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 388
HpyF3I	CTNAG	4 cut(s)	39, 320, 366, 444
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	5 cut(s)	37, 118, 159, 233, 386
Kzo9I	GATC	4 cut(s)	55, 295, 393, 412
LpnPI	CCDG	7 cut(s)	95, 122, 136, 177, 181, 203, 247
Lsp1109I	GCAGC	4 cut(s)	73, 76, 130, 238
LweI	GCATC	4 cut(s)	67, 75, 76, 325
MaeII	ACGT	1 cut(s)	289
MalI	GATC	4 cut(s)	57, 297, 395, 414
MboI	GATC	4 cut(s)	55, 295, 393, 412
MboII	GAAGA	2 cut(s)	122, 356
MfeI	CAATTG	2 cut(s)	183, 425
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	3 cut(s)	72, 183, 425
MnlI	CCTC	7 cut(s)	111, 133, 219, 286, 340, 348, 447
MspI	CCGG	1 cut(s)	190
MunI	CAATTG	2 cut(s)	183, 425
MwoI	GCNNNNNNNGC	2 cut(s)	140, 388
NdeII	GATC	4 cut(s)	55, 295, 393, 412
NlaIII	CATG	5 cut(s)	37, 118, 159, 233, 386
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	4
PinAI	ACCGGT	1 cut(s)	189
PkrI	GCNGC	5 cut(s)	52, 63, 66, 145, 253
PsuI	RGATCY	1 cut(s)	412
SatI	GCNGC	5 cut(s)	51, 62, 65, 144, 252
Sau3AI	GATC	4 cut(s)	55, 295, 393, 412
SetI	ASST	8 cut(s)	18, 103, 177, 253, 264, 292, 372, 450
SfaNI	GCATC	4 cut(s)	67, 75, 76, 325
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	3 cut(s)	72, 183, 425
SsiI	CCGC	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	306, 397
TaiI	ACGT	1 cut(s)	292
TasI	AATT	3 cut(s)	72, 183, 425
TauI	GCSGC	1 cut(s)	53
TscAI	CASTG	2 cut(s)	141, 448
TseI	GCWGC	4 cut(s)	61, 64, 143, 251
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	2 cut(s)	141, 448
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.