Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Forward (+)

47768031 .. 47769229

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATGTTTTTTTTCACTTCTTTAGTTGATGTGGAGAGACATGCTAGAGATTTTATGGACGCTGCCAAAAAGCTTCAGCTGCATTTTGTTGGTCTGCAACGTGAGGACCAGCCAACAAATGCTGAACAACTTAGAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAATATAAAGACTGAGATCATCAAGAAGCATGAAAGGCTAATCCAGGGGTGGAAAAAGGAGCTAAAAGACCAATTGAACAAGCACAATACCGAGCTTGAGAAGGCGGAGTTTTTAAAGCTCTGCAAGAGAATTGAGTCCACGATTCAGGCTTGGTATCTTCTACAATTCGACGATTTGATGCTACTGTATTCGCTCTTTGATCCTGTAGATGGGAAAAAAAATTGCAGCAACAGAGTTTTTTTTCTAAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

16.66

Weight (kDa)

6.91

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	9 - 76	4.3e-17	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	166, 241
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	5 cut(s)	73, 79, 226, 259, 283
AluI	AGCT	5 cut(s)	73, 79, 226, 259, 283
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	62, 79, 390
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	49, 66, 402
BccI	CCATC	2 cut(s)	145, 368
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	3 cut(s)	63, 80, 391
BlsI	GCNGC	3 cut(s)	64, 81, 392
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	49, 66, 402
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	180, 364
BspACI	CCGC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	180, 364
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	131, 177
BstKTI	GATC	2 cut(s)	183, 367
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	180, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 199
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	49, 66, 402
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	68
CviAII	CATG	2 cut(s)	41, 194
CviJI	RGCY	8 cut(s)	73, 79, 112, 202, 226, 259, 283, 314
CviKI_1	RGCY	8 cut(s)	73, 79, 112, 202, 226, 259, 283, 314
DdeI	CTNAG	2 cut(s)	131, 177
DpnI	GATC	2 cut(s)	182, 366
DpnII	GATC	2 cut(s)	180, 364
DraI	TTTAAA	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	44, 197
FaiI	YATR	4 cut(s)	42, 56, 170, 195
FatI	CATG	2 cut(s)	40, 193
Fnu4HI	GCNGC	3 cut(s)	63, 80, 391
Fsp4HI	GCNGC	3 cut(s)	63, 80, 391
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	63, 80, 391
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	44, 197
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	299, 307
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	82, 97, 288, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 199
HpyF3I	CTNAG	2 cut(s)	131, 177
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	44, 197
Kzo9I	GATC	2 cut(s)	180, 364
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	5 cut(s)	122, 194, 221, 296, 381
Lsp1109I	GCAGC	3 cut(s)	49, 66, 402
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	100
MalI	GATC	2 cut(s)	182, 366
MboI	GATC	2 cut(s)	180, 364
MboII	GAAGA	2 cut(s)	167, 314
MfeI	CAATTG	1 cut(s)	236
MluCI	AATT	5 cut(s)	236, 294, 329, 385, 415
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	2 cut(s)	97, 151
MseI	TTAA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	79, 199
NdeII	GATC	2 cut(s)	180, 364
NlaIII	CATG	2 cut(s)	44, 197
NspI	RCATGY	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	64, 81, 392
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	3 cut(s)	63, 80, 391
Sau3AI	GATC	2 cut(s)	180, 364
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	6 cut(s)	75, 81, 103, 228, 261, 285
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	236, 294, 329, 385, 415
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	351
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	333
TasI	AATT	5 cut(s)	236, 294, 329, 385, 415
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseI	GCWGC	3 cut(s)	62, 79, 390
TspDTI	ATGAA	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.